Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04240 and BPUM_2663
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:45
# Commandline: needle
# -asequence dna-align/BSNT_04240___ytbD.1.24716.seq
# -bsequence dna-align/BPUM_2663.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04240___ytbD-BPUM_2663.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04240___ytbD-BPUM_2663.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04240___ytbD
# 2: BPUM_2663
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1331
# Identity: 803/1331 (60.3%)
# Similarity: 803/1331 (60.3%)
# Gaps: 265/1331 (19.9%)
# Score: 2222.5
#
#
#=======================================
BSNT_04240___ 1 ATGACTTCAGCCAATAAAAGCAATATTCC----TGCACTACTGGCTTTGG 46
|||| |..||||.|||.| || |||.||.||.||..|.|
BPUM_2663 1 ATGA--------AGAAAAAACAAAA--CCACCTTGCCCTTCTCGCACTAG 40
BSNT_04240___ 47 CCGTAAGTGCATTCGCAATAGGGACAACTGAATTTATCAGTGTCGGCCTT 96
||.|.|||||.||.||.|||||.||.|||||.|||||.||||||||.|||
BPUM_2663 41 CCATTAGTGCTTTTGCTATAGGAACCACTGAGTTTATTAGTGTCGGTCTT 90
BSNT_04240___ 97 TTGCCGCTCATTGCTGATGAC-CTGGATATTCCCGTCACGACA-GCAGGA 144
|||||..|.|||.|.||.||| .|||| .|...||||| |.|| ||.||.
BPUM_2663 91 TTGCCAATGATTTCAGAGGACTTTGGA-GTGAGCGTCA-GCCAGGCGGGC 138
BSNT_04240___ 145 TTGACCGTTTCCCTTTATGCGCTCGGCGTTACATTTGGGGCACCTATATT 194
|.||||||.||..|.|||||.||.||.||.|||||.||.||.|||||.||
BPUM_2663 139 TGGACCGTCTCTTTATATGCTCTTGGTGTGACATTCGGCGCGCCTATTTT 188
BSNT_04240___ 195 AACTTCATTGACCTCAAGCATGTCACGTAAGACACTATTGCTTTGGATCA 244
.|||||..||||.||||..|||..|.|.||||| ||||||||.|.|||
BPUM_2663 189 GACTTCTCTGACTTCAACGATGAAAAGAAAGAC---ATTGCTTTTGCTCA 235
BSNT_04240___ 245 T-------GTTTATTTTTATTGCCGGTAATACGATGGCAGCAACCGCTTC 287
| ||.| ||||.||| ||.|||||..|.||..|||..|||.|
BPUM_2663 236 TTATGCTCGTCT-TTTTGATT---GGAAATACACTTGCCACAATAGCTCC 281
BSNT_04240___ 288 AAGCATCGGGATTT----TACTAGCA---GCACGTGTGATATCGGCATTT 330
.|.| ||| |||||..| |..||.||.||.||.||.||.
BPUM_2663 282 GACC-------TTTTCAATACTATTAATCGGGCGGGTCATTTCAGCCTTA 324
BSNT_04240___ 331 TCGCACGGTGTGTTTATGTCGATCGGTTCGACAATCGC----AGCGGATA 376
||.||.||..|.||||||||.||.||.||.||.||||| ||| .
BPUM_2663 325 TCCCATGGAATCTTTATGTCCATTGGCTCTACGATCGCTGCAAGC----C 370
BSNT_04240___ 377 TTGTCCCGGAGGATAAAAGGGCTAGCGCGATTTCAATTATGTTTACTGGC 426
||||...|.|.||.|||.||||.|||||||||.|..|||||||.||.||.
BPUM_2663 371 TTGTAGTGAAAGAAAAACGGGCAAGCGCGATTGCCTTTATGTTCACCGGA 420
BSNT_04240___ 427 CTCACTGTGGCAACTGTAACCGGAGTTCCTTTTGGGACATTTATCGGCCA 476
.|.||.||.||.|||||.||.||.||.||.||.|||||||||.|.|||||
BPUM_2663 421 TTAACAGTTGCGACTGTGACGGGCGTACCATTCGGGACATTTCTTGGCCA 470
BSNT_04240___ 477 GCAGTTCGGCTGGCGTTTCGCCTTTATGGTCATTATCGCCGTCGGAATCA 526
..||.||||.|||| ||.|||.|| ||||..|.|
BPUM_2663 471 TGAGCTCGGATGGC-------------GGACATCAT-----TCGGTGTAA 502
BSNT_04240___ 527 TTGCTTTCATT--ACAAATGGCATT----------------CTTGTACCG 558
|||...||||| .|.|||.||||| |||||.||.
BPUM_2663 503 TTGTCATCATTGGTCTAATCGCATTAATATCTAACTATTTCCTTGTTCCA 552
BSNT_04240___ 559 TCCAAATTACGAA--AAGGGACG--AAAACAACGATGCGGGATCA----- 599
||..||||| || |||| || ||||||.|..|...||||||
BPUM_2663 553 TCTCAATTA--AAGCAAGG--CGTAAAAACATCATTTAAGGATCAAGCTG 598
BSNT_04240___ 600 ----ATTGAAGCTTGTGACAAACAGCCGGTTATTGCTTTTATTTGTCATT 645
|||.|| .|||||.| |..|.||||||.|||||||||||
BPUM_2663 599 TCTTATTAAA------AACAAAAA---GAATCTTGCTTCTATTTGTCATT 639
BSNT_04240___ 646 ACAGCGCTTGGATACGGAGGAACATTCGTTGTGTTCACGTATCTGTCTCC 695
|||||....|||||||||||||||||.||.||.||.||||| || |.|||
BPUM_2663 640 ACAGCAACAGGATACGGAGGAACATTTGTCGTCTTTACGTA-CT-TATCC 687
BSNT_04240___ 696 CCT-GCTT-CAGGAAGTAACAGG-CTT-CAAAGCC-GGGACTGTTGCAGT 740
||| .||| |||.|.||.||||| ||| | ||| |||.|.||.|||.|
BPUM_2663 688 CCTCTCTTACAGCATGTGACAGGTCTTGC---GCCAGGGGCGGTGGCATT 734
BSNT_04240___ 741 GATTCTGCTCGGATACGGAATAGCTATTGCTATCGGCAATATGATTGGCG 790
|||||||||...|||||||||..|.||.||...|||.|||.|.|||||||
BPUM_2663 735 GATTCTGCTTTTATACGGAATCACGATCGCAGCCGGAAATGTCATTGGCG 784
BSNT_04240___ 791 GAAAG-------CTGTCAAACC---GAAATCCGATTGCCGCTTTATTCTA 830
||||| .||..||.|| ||||.| |.|| ||| ||
BPUM_2663 785 GAAAGGTTGCTAATGAGAAGCCAATGAAAGC--ACTG-------ATT-TA 824
BSNT_04240___ 831 TATGTTTATCGTAC-AAGCA----ATTGTTCTATTCGTA--CTGAC---- 869
.|||||||||.|.| ||||| .||||| |||.|.|| .||||
BPUM_2663 825 CATGTTTATCATCCAAAGCATCATTTTGTT-TATCCTTAGCTTGACTGCT 873
BSNT_04240___ 870 --ATTTACAGCCCCGTATCAAGCAGCAGG-GCT---CATT---ACCATTC 910
|||||| || ||| |||| |||.|..
BPUM_2663 874 GGATTTAC-------------------GGTGCTAGGCATTGCAACCGTCA 904
BSNT_04240___ 911 T-CTGTATGGGATTGCTGGCCTTTATGAACGTGCCCGGCCTTCAGGTGTA 959
| ||| ||||||.||.|.||.||.|||||.||.||.||.||.||.||...
BPUM_2663 905 TGCTG-ATGGGACTGTTTGCTTTCATGAATGTACCTGGGCTGCAAGTCGC 953
BSNT_04240___ 960 TGTCGTCATGCTGGCTGAGCGTTTTGTCCCGA--------------GTGC 995
|||||| ||| .|||| |.|| |.||
BPUM_2663 954 TGTCGT---------TGA---CTTTG--CAGAAAGATACACACCAGGAGC 989
BSNT_04240___ 996 AGTTGACGTCGCATCCGCGATGAATATCGCTGCCTTTAATGCAGGGATCG 1045
|||.||||||||.|||||.|||||||||||||||||||||||.||.||||
BPUM_2663 990 AGTCGACGTCGCTTCCGCTATGAATATCGCTGCCTTTAATGCCGGTATCG 1039
BSNT_04240___ 1046 CGCTTGGGTCATACCTTGGCGGTGTGATCACCGATTCAATC---GGATTG 1092
|..|.||.||||...|.|||||..|..|.||.||| |.|| ||.|||
BPUM_2663 1040 CCATCGGCTCATTTTTAGGCGGCATCGTGACAGAT--ACTCTTGGGCTTG 1087
BSNT_04240___ 1093 ATTCATACCGCTTGGATAGGCGGATTAATGGTGGTCGGTGCAGTCATTTT 1142
|.|||||.|..|||.|.|||||..|.|||||..|...|||.|..|||.|
BPUM_2663 1088 -TGCATACAGGCTGGGTCGGCGGCATCATGGTCCTGATTGCTGCGATTCT 1136
BSNT_04240___ 1143 AACAGGCTG----------GAGCCGCTTGATGGAAAAACGAG-------- 1174
||.|.|| || ||.|||.|||.||
BPUM_2663 1137 --CACGATGATTAGTTTTCGA--------ATCGAACAACAAGAACAAAAA 1176
BSNT_04240___ 1175 -------ATCGGCAGGAAGC-------CTGA 1191
|||...||| ||| .|||
BPUM_2663 1177 TCAAACCATCTAAAGG-AGCGTTCAATATGA 1206
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