Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04239 and BPUM_2662
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:45
# Commandline: needle
# -asequence dna-align/BSNT_04239___ytcD.1.24716.seq
# -bsequence dna-align/BPUM_2662___ytcD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04239___ytcD-BPUM_2662___ytcD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04239___ytcD-BPUM_2662___ytcD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04239___ytcD
# 2: BPUM_2662___ytcD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 416
# Identity: 287/416 (69.0%)
# Similarity: 287/416 (69.0%)
# Gaps: 46/416 (11.1%)
# Score: 1049.0
#
#
#=======================================
BSNT_04239___ 1 ---------------------------------ATGGAGAAGAAAAAATA 17
|||||.|||||||||||
BPUM_2662___y 1 GTGCCTGTTCGTATAAAGAGGAGTGAGGATTTAATGGAAAAGAAAAAATA 50
BSNT_04239___ 18 TAACATTTCTGTTGAAGCGACTCTTGAAGTGATCGGTGGGAAATGGAAAT 67
|||.||.||.||.||||||||.|||||.||.||.|||||.||.|||||.|
BPUM_2662___y 51 TAATATCTCCGTGGAAGCGACCCTTGAGGTCATAGGTGGAAAGTGGAAGT 100
BSNT_04239___ 68 GCGTCATTTTATGCCATCTGACGCACGGAAAAAAACGCACAAGTGAATTA 117
||||.||||||||.|||.|.||.||.||.||||||||||||||||||||.
BPUM_2662___y 101 GCGTGATTTTATGTCATTTAACACATGGGAAAAAACGCACAAGTGAATTG 150
BSNT_04239___ 118 AAACGCCTAATGCCCAATATCACGCAAAAAATGCTGACTCAGCAGCTGCG 167
||.||.||.|||||.||.|||||.|||||||||||.||.|||||||||.|
BPUM_2662___y 151 AAGCGGCTCATGCCAAACATCACACAAAAAATGCTTACACAGCAGCTGAG 200
BSNT_04239___ 168 CGAGCTGGAAGCGGACAGTGTCATTAACCGAATCGTATATAATCAAGTTC 217
.|||||.|||...||..|.||.||||||||.||.||.|||.|.|||||.|
BPUM_2662___y 201 AGAGCTTGAAAGTGATGGAGTGATTAACCGGATTGTGTATGAGCAAGTAC 250
BSNT_04239___ 218 CTCCCAAAGTGGAATACGAGCTCAGCGAATACGG-CCGCAGCTTAGAAGG 266
|.||.|||||||||||.||..|.||.|||||||| |.|..|| |.|||.|
BPUM_2662___y 251 CGCCTAAAGTGGAATATGAATTAAGTGAATACGGTCAGTCGC-TCGAAAG 299
BSNT_04239___ 267 GATTTTAGATATGCTGTGTGCTTGGGGAGCGAATCATATT-AACAGAGTG 315
.|||.|..||..|||.||||.|||||||||...||||||| ||| |.|||
BPUM_2662___y 300 AATTCTGAATGCGCTATGTGATTGGGGAGCAGCTCATATTGAAC-GTGTG 348
BSNT_04239___ 316 TACGGGGATACATTTTCTGTGCTAGAAGAAAGTGTGCTCAATGATAAGTT 365
|||||.||..|..||||.||.||||||||.|||.|..|.|||||..||||
BPUM_2662___y 349 TACGGAGAGCCGCTTTCGGTACTAGAAGACAGTATTTTAAATGAACAGTT 398
BSNT_04239___ 366 AAAACAGGAATCATAA 381
.|| ||||
BPUM_2662___y 399 TAA---------ATAA 405
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