Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04392 and BPUM_2661

See Amino acid alignment / Visit BSNT_04392 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:56
# Commandline: needle
#    -asequence dna-align/BSNT_04392.1.24716.seq
#    -bsequence dna-align/BPUM_2661___ytdP.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04392-BPUM_2661___ytdP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04392-BPUM_2661___ytdP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04392
# 2: BPUM_2661___ytdP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2382
# Identity:     868/2382 (36.4%)
# Similarity:   868/2382 (36.4%)
# Gaps:        1257/2382 (52.8%)
# Score: 2910.5
# 
#
#=======================================

BSNT_04392         0 --------------------------------------------------      0
                                                                       
BPUM_2661___y      1 ATGGGGGGTTTTATGAAAAGAAGGCAATATAAATTTTATTACAAGCTCGT     50

BSNT_04392         0 --------------------------------------------------      0
                                                                       
BPUM_2661___y     51 CACGTTTTTTTTCATGCTTAGTACGATTCCTGTCATCATTGTCGGTATTT    100

BSNT_04392         0 --------------------------------------------------      0
                                                                       
BPUM_2661___y    101 TTTCTTATCAGCATTCACAAAAAACAGCACTCGAAAATATCTCAAATGAA    150

BSNT_04392         0 --------------------------------------------------      0
                                                                       
BPUM_2661___y    151 AAGCTGGACAGCGTGAAACAAACGCAATCTAATATTGAGCATATTTTAAA    200

BSNT_04392         0 --------------------------------------------------      0
                                                                       
BPUM_2661___y    201 GACTGTTGATCATTCTCTCACTCACTATGTCAGTTCGCCGCCTCTCCTTC    250

BSNT_04392         0 --------------------------------------------------      0
                                                                       
BPUM_2661___y    251 AAACACTGGCAGAACCTTTAAATCCAGACCAATTCCAGCTTTATAATCAA    300

BSNT_04392         0 --------------------------------------------------      0
                                                                       
BPUM_2661___y    301 GTACAGCAGGAACTAAACTACTTGCAAACCTTTGACACCGATCTTTCCAA    350

BSNT_04392         0 --------------------------------------------------      0
                                                                       
BPUM_2661___y    351 TATTACACTCGTCAGTAAAATGGAAGACTGGTACATGAACAATTCAGGGC    400

BSNT_04392         0 --------------------------------------------------      0
                                                                       
BPUM_2661___y    401 TTTATCATGTCACAAGCGGAGACCAAGAAAAAGCGCTCACCTCTTACCTC    450

BSNT_04392         0 --------------------------------------------------      0
                                                                       
BPUM_2661___y    451 AATATTCCAAGTCATTCTAGCTGGGTACTTGAAGAGAATAATCCACTTGT    500

BSNT_04392         0 --------------------------------------------------      0
                                                                       
BPUM_2661___y    501 TGCGACAAAAGAAGGAAAGGCTTCCTTTTGCAAATACAATGTGAACTTAA    550

BSNT_04392         0 --------------------------------------------------      0
                                                                       
BPUM_2661___y    551 TCAAGCAACTTCCGATGAACAGTGTCCAGAAAAAAGGAATCGCTGTCGCC    600

BSNT_04392         0 --------------------------------------------------      0
                                                                       
BPUM_2661___y    601 AGCATTCCGAGCTGTACGATTGCTAACAATATGCCTGACTTCTCTCAATC    650

BSNT_04392         0 --------------------------------------------------      0
                                                                       
BPUM_2661___y    651 TGACAGTATGTTTGTCATTGATACGAATGGAAAAGTGCTTTTACATAACC    700

BSNT_04392         0 --------------------------------------------------      0
                                                                       
BPUM_2661___y    701 GCAAAAAACAAATTGGTGAATCCTTGAAAAATCAAGAGTTCGTCAAGCAT    750

BSNT_04392         0 --------------------------------------------------      0
                                                                       
BPUM_2661___y    751 GTCCTATCAAGTGAAGAACGATCAGGTCAATTTAACATGAAGATCGAGGA    800

BSNT_04392         0 --------------------------------------------------      0
                                                                       
BPUM_2661___y    801 ACTAAACTATCAAATTACGTTTCAAAAATCAGACTATAACGAATGGACGT    850

BSNT_04392         0 --------------------------------------------------      0
                                                                       
BPUM_2661___y    851 ACCTCTCCTTTGTTTCCATACCAGAACTCAAGGCACAAACGAAATCAATA    900

BSNT_04392         0 --------------------------------------------------      0
                                                                       
BPUM_2661___y    901 GGGTGGATCACCTTTATTATCTGTTTTATTTTGTTAGCGCTTTCATTGTT    950

BSNT_04392         0 --------------------------------------------------      0
                                                                       
BPUM_2661___y    951 ATTTTCATGGTTTGGCTCCAGACATTTTTATAAACCCATCCGCTTGTTAT   1000

BSNT_04392         0 --------------------------------------------------      0
                                                                       
BPUM_2661___y   1001 ACGAGTCCTTTGCACGTAATGAATCCTTTTTGCAAAAGCAGCCTTTTCAA   1050

BSNT_04392         0 --------------------------------------------------      0
                                                                       
BPUM_2661___y   1051 AATGAATTTGAGTTGATTGAGTCGAGTATTAAACAAATGAAGGATCAAAA   1100

BSNT_04392         1 -------------------ATGAAGCAGCAGGCCACTCATCTGCAGCAAT     31
                                        ||..|||||||.|.|||.||.||.|||||||
BPUM_2661___y   1101 CAATGATTTAGAGGAACGGATTGAGCAGCAAGTCACGCACCTCCAGCAAT   1150

BSNT_04392        32 ATTTTATGGTCAGGCTTATGCTTGGAAAACTGACGGATGAGGAGGTTGAT     81
                     |.||||||||..||||..||||.|||||.|||||.||.||.|||.||.|.
BPUM_2661___y   1151 ACTTTATGGTACGGCTATTGCTCGGAAAGCTGACAGAAGAAGAGATTAAC   1200

BSNT_04392        82 AACCGTTTTGAAAG----------CCTC--GGCTTAAAGCAAAATTGGCG    119
                     |||||.||..||||          ||||  |||            |||..
BPUM_2661___y   1201 AACCGGTTCCAAAGTTTAGGATTCCCTCAGGGC------------TGGTC   1238

BSNT_04392       120 GCACCTTGCCCTGCTTGTGCTCCAAATTGACACACTGAATCATACACCTT    169
                     .|||.|..||.||||||||..||||||.||.|||||.||....|||||||
BPUM_2661___y   1239 TCACTTATCCATGCTTGTGACCCAAATCGATACACTAAAAGGAACACCTT   1288

BSNT_04392       170 ATGAGAAAAAAGATATGGATCTGCTTTTGTTTGCCGTCAACAGCCTGATT    219
                     ||||.|||||.|||...||..|.|||||.|||||..||||..|.||||||
BPUM_2661___y   1289 ATGAAAAAAAGGATGCTGACTTACTTTTATTTGCGATCAATGGACTGATT   1338

BSNT_04392       220 GAGCGCAGCATCCCGACGGACA-----AACATCTTGCCCCCGCC----GT    260
                     ||||..|..||.||     |||     |.||||||    |.|||    ||
BPUM_2661___y   1339 GAGCAGATTATTCC-----ACAAGAGGAGCATCTT----CAGCCAACAGT   1379

BSNT_04392       261 GGTGGACAAACAGCAGGCA----ACGATT----TTGATCAATCAAAGCGG    302
                     .||   |||.||||| .||    ||||||    |..||||.|||||    
BPUM_2661___y   1380 TGT---CAATCAGCA-TCAAACGACGATTATCCTAAATCACTCAAA----   1421

BSNT_04392       303 GACAAAGGAGGAATTCATGGCTGAGCTGAATGAGACTGCAAGGATGATTC    352
                     |.||.|.||.|||||.|        ||||||               |||.
BPUM_2661___y   1422 GTCAGATGAAGAATTTA--------CTGAAT---------------ATTT   1448

BSNT_04392       353 AGGAA--AA--AGCGGAAGC---TGAGCTGC------------AGC----    379
                     |  ||  ||  |||.|||.|   |.||||||            |||    
BPUM_2661___y   1449 A--AACCAATTAGCAGAAACCATTCAGCTGCGTATCGAGGAAGAGCTTGG   1496

BSNT_04392       380 --TGTCTGTCAGCATCGGCGTCAGCCAGCC-GTTTGATGCGCTGACAAAG    426
                       |.||..||||||||||..|||||| ||| ||||.|.|.|||.||.|.|
BPUM_2661___y   1497 TTTATCGATCAGCATCGGAATCAGCC-GCCAGTTTCAGGAGCTCACTATG   1545

BSNT_04392       427 GCGAAAACA-GCCTACGCTGAAGGTTCGGAGGCGTTGAAATACCGGCTTA    475
                     || |||||| ||.|||..||||||....|||||.||.||||||.||||.|
BPUM_2661___y   1546 GC-AAAACAGGCTTACATTGAAGGAAAAGAGGCCTTAAAATACAGGCTCA   1594

BSNT_04392       476 AAGCGGAAAACAAGTCGATCATCTTTTACGAAGACCTTGACCAGAA---A    522
                     ||||.||.||.||.||.||.|||||.||.|||   |.|..||||.|   |
BPUM_2661___y   1595 AAGCAGAGAAAAAATCCATTATCTTATATGAA---CATATCCAGCAAGGA   1641

BSNT_04392       523 AAAACCTTCAAAACCCATTTTCCAAAGCAGCTTCAGCATGAGCTGTTCGA    572
                     |||||.||.|||||||||||||||||||||.|.||||||||..|.||.||
BPUM_2661___y   1642 AAAACGTTTAAAACCCATTTTCCAAAGCAGTTGCAGCATGATTTATTTGA   1691

BSNT_04392       573 TGCCGTTAAAGCAGGAGA-CAAGGAGAAAGCGGATAAATGCCTGCACGCG    621
                     |||..|.||||||||.|| ||||| .||.||.|||.|.|...|.||.|.|
BPUM_2661___y   1692 TGCAATAAAAGCAGGTGATCAAGG-CAAGGCAGATCACTATTTACATGTG   1740

BSNT_04392       622 ATTTTGCAAGCCATTTTCACCCAGAA-----CACCAACCCGTATCAATTT    666
                     .|..|.|||.||||||||.|..|.||     .||||     .||.|.|.|
BPUM_2661___y   1741 CTCCTTCAATCCATTTTCTCTAAAAATGCGGGACCA-----CATGAGTAT   1785

BSNT_04392       667 CAAATCGCCATCGCCCGTTTTTTGAACCATGTGATTGAGCTGATGCATGT    716
                     ||.||||||.|||||||||||||.|||.||.|||||||||||||||||.|
BPUM_2661___y   1786 CATATCGCCCTCGCCCGTTTTTTAAACAATTTGATTGAGCTGATGCATTT   1835

BSNT_04392       717 GCTTGGGATCGAATTGTTTGAGCTTGAAGAAAACAAAATGCTGTATGACC    766
                     ||||||.||.||||||||||||.|||||||.||.||||||||||||||..
BPUM_2661___y   1836 GCTTGGCATTGAATTGTTTGAGGTTGAAGACAATAAAATGCTGTATGATA   1885

BSNT_04392       767 AAATTTTTGAGCTGAAAACGTTCGAGGATACCGAAAACTGGCTAAAAAAT    816
                     .|||||||||..|.||||||||.||.|||||||||...|||||.|||.||
BPUM_2661___y   1886 CAATTTTTGAATTTAAAACGTTTGAAGATACCGAAGCATGGCTGAAACAT   1935

BSNT_04392       817 GAGTTTATTGATCCGATGACAGACAAAGTGAACGCCCGCGCGGATGCCCA    866
                     |||.|.|||.|.||.||.|..|||.|..|...|||.||||.|||..|.||
BPUM_2661___y   1936 GAGATCATTCAGCCAATTATTGACCAGCTAGGCGCACGCGAGGAATCACA   1985

BSNT_04392       867 GTACAAAAATATTTCCGACAACATCATTCATATCATCCATCATGAGTTTG    916
                     .||||||||.||.||.||.||.||||||||||||||||||||.||.||.|
BPUM_2661___y   1986 ATACAAAAACATCTCAGAAAAGATCATTCATATCATCCATCAAGAATTCG   2035

BSNT_04392       917 AATCCGAATTGACACTGGACGAAATCGCGCGCA-GGCTGCATTACAACCC    965
                     |.||.||..|.|||.||||.|||||||| |.|| |.||.|||||||||||
BPUM_2661___y   2036 ATTCTGATCTCACATTGGATGAAATCGC-CACACGCCTACATTACAACCC   2084

BSNT_04392       966 AAATTATTTAAGCAGCATTTTCAAAAAAGAAATGGGTATTTCATTCAGCG   1015
                     |||||||||||||||.||.||.|.|||.|||||||.|||.||.||.||.|
BPUM_2661___y   2085 AAATTATTTAAGCAGTATCTTTAGAAAGGAAATGGATATCTCTTTTAGTG   2134

BSNT_04392      1016 AGTATGTCTCAAGCTACCGACACCATATGGCGAAAAGCTGGCTTGCCGAA   1065
                     |.|||.|||||..||||.||||||||.|.||.||||.||||||.|..|||
BPUM_2661___y   2135 AATATCTCTCATCCTACAGACACCATGTCGCCAAAAACTGGCTCGTGGAA   2184

BSNT_04392      1066 ACAGACATGGCGGTCAAGGACATTGCCGAAAAGCTGAAATATAAAAACTC   1115
                     ||.||.|||.|.|||||.||.|||.|.|||||.|||||||||||||||.|
BPUM_2661___y   2185 ACCGATATGTCCGTCAAAGAAATTTCGGAAAAACTGAAATATAAAAACCC   2234

BSNT_04392      1116 GCAAAATTTTATCAGGTCTTTTAAAAAGCTGGAGGGGATTACACCGGGAA   1165
                     ||||||.||.|||.|.||.||.|||||.||.||.||.|..||.||.||.|
BPUM_2661___y   2235 GCAAAACTTCATCCGTTCCTTCAAAAAACTAGAAGGCACGACCCCAGGCA   2284

BSNT_04392      1166 ACTACCG---CCAGCAAAAAAGAAGCATGTAA   1194
                     |.|||||   |||| |||||||  ||||.|||
BPUM_2661___y   2285 AATACCGTGACCAG-AAAAAAG--GCATATAA   2313


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.