Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04392 and BPUM_2661
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:56
# Commandline: needle
# -asequence dna-align/BSNT_04392.1.24716.seq
# -bsequence dna-align/BPUM_2661___ytdP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04392-BPUM_2661___ytdP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04392-BPUM_2661___ytdP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04392
# 2: BPUM_2661___ytdP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2382
# Identity: 868/2382 (36.4%)
# Similarity: 868/2382 (36.4%)
# Gaps: 1257/2382 (52.8%)
# Score: 2910.5
#
#
#=======================================
BSNT_04392 0 -------------------------------------------------- 0
BPUM_2661___y 1 ATGGGGGGTTTTATGAAAAGAAGGCAATATAAATTTTATTACAAGCTCGT 50
BSNT_04392 0 -------------------------------------------------- 0
BPUM_2661___y 51 CACGTTTTTTTTCATGCTTAGTACGATTCCTGTCATCATTGTCGGTATTT 100
BSNT_04392 0 -------------------------------------------------- 0
BPUM_2661___y 101 TTTCTTATCAGCATTCACAAAAAACAGCACTCGAAAATATCTCAAATGAA 150
BSNT_04392 0 -------------------------------------------------- 0
BPUM_2661___y 151 AAGCTGGACAGCGTGAAACAAACGCAATCTAATATTGAGCATATTTTAAA 200
BSNT_04392 0 -------------------------------------------------- 0
BPUM_2661___y 201 GACTGTTGATCATTCTCTCACTCACTATGTCAGTTCGCCGCCTCTCCTTC 250
BSNT_04392 0 -------------------------------------------------- 0
BPUM_2661___y 251 AAACACTGGCAGAACCTTTAAATCCAGACCAATTCCAGCTTTATAATCAA 300
BSNT_04392 0 -------------------------------------------------- 0
BPUM_2661___y 301 GTACAGCAGGAACTAAACTACTTGCAAACCTTTGACACCGATCTTTCCAA 350
BSNT_04392 0 -------------------------------------------------- 0
BPUM_2661___y 351 TATTACACTCGTCAGTAAAATGGAAGACTGGTACATGAACAATTCAGGGC 400
BSNT_04392 0 -------------------------------------------------- 0
BPUM_2661___y 401 TTTATCATGTCACAAGCGGAGACCAAGAAAAAGCGCTCACCTCTTACCTC 450
BSNT_04392 0 -------------------------------------------------- 0
BPUM_2661___y 451 AATATTCCAAGTCATTCTAGCTGGGTACTTGAAGAGAATAATCCACTTGT 500
BSNT_04392 0 -------------------------------------------------- 0
BPUM_2661___y 501 TGCGACAAAAGAAGGAAAGGCTTCCTTTTGCAAATACAATGTGAACTTAA 550
BSNT_04392 0 -------------------------------------------------- 0
BPUM_2661___y 551 TCAAGCAACTTCCGATGAACAGTGTCCAGAAAAAAGGAATCGCTGTCGCC 600
BSNT_04392 0 -------------------------------------------------- 0
BPUM_2661___y 601 AGCATTCCGAGCTGTACGATTGCTAACAATATGCCTGACTTCTCTCAATC 650
BSNT_04392 0 -------------------------------------------------- 0
BPUM_2661___y 651 TGACAGTATGTTTGTCATTGATACGAATGGAAAAGTGCTTTTACATAACC 700
BSNT_04392 0 -------------------------------------------------- 0
BPUM_2661___y 701 GCAAAAAACAAATTGGTGAATCCTTGAAAAATCAAGAGTTCGTCAAGCAT 750
BSNT_04392 0 -------------------------------------------------- 0
BPUM_2661___y 751 GTCCTATCAAGTGAAGAACGATCAGGTCAATTTAACATGAAGATCGAGGA 800
BSNT_04392 0 -------------------------------------------------- 0
BPUM_2661___y 801 ACTAAACTATCAAATTACGTTTCAAAAATCAGACTATAACGAATGGACGT 850
BSNT_04392 0 -------------------------------------------------- 0
BPUM_2661___y 851 ACCTCTCCTTTGTTTCCATACCAGAACTCAAGGCACAAACGAAATCAATA 900
BSNT_04392 0 -------------------------------------------------- 0
BPUM_2661___y 901 GGGTGGATCACCTTTATTATCTGTTTTATTTTGTTAGCGCTTTCATTGTT 950
BSNT_04392 0 -------------------------------------------------- 0
BPUM_2661___y 951 ATTTTCATGGTTTGGCTCCAGACATTTTTATAAACCCATCCGCTTGTTAT 1000
BSNT_04392 0 -------------------------------------------------- 0
BPUM_2661___y 1001 ACGAGTCCTTTGCACGTAATGAATCCTTTTTGCAAAAGCAGCCTTTTCAA 1050
BSNT_04392 0 -------------------------------------------------- 0
BPUM_2661___y 1051 AATGAATTTGAGTTGATTGAGTCGAGTATTAAACAAATGAAGGATCAAAA 1100
BSNT_04392 1 -------------------ATGAAGCAGCAGGCCACTCATCTGCAGCAAT 31
||..|||||||.|.|||.||.||.|||||||
BPUM_2661___y 1101 CAATGATTTAGAGGAACGGATTGAGCAGCAAGTCACGCACCTCCAGCAAT 1150
BSNT_04392 32 ATTTTATGGTCAGGCTTATGCTTGGAAAACTGACGGATGAGGAGGTTGAT 81
|.||||||||..||||..||||.|||||.|||||.||.||.|||.||.|.
BPUM_2661___y 1151 ACTTTATGGTACGGCTATTGCTCGGAAAGCTGACAGAAGAAGAGATTAAC 1200
BSNT_04392 82 AACCGTTTTGAAAG----------CCTC--GGCTTAAAGCAAAATTGGCG 119
|||||.||..|||| |||| ||| |||..
BPUM_2661___y 1201 AACCGGTTCCAAAGTTTAGGATTCCCTCAGGGC------------TGGTC 1238
BSNT_04392 120 GCACCTTGCCCTGCTTGTGCTCCAAATTGACACACTGAATCATACACCTT 169
.|||.|..||.||||||||..||||||.||.|||||.||....|||||||
BPUM_2661___y 1239 TCACTTATCCATGCTTGTGACCCAAATCGATACACTAAAAGGAACACCTT 1288
BSNT_04392 170 ATGAGAAAAAAGATATGGATCTGCTTTTGTTTGCCGTCAACAGCCTGATT 219
||||.|||||.|||...||..|.|||||.|||||..||||..|.||||||
BPUM_2661___y 1289 ATGAAAAAAAGGATGCTGACTTACTTTTATTTGCGATCAATGGACTGATT 1338
BSNT_04392 220 GAGCGCAGCATCCCGACGGACA-----AACATCTTGCCCCCGCC----GT 260
||||..|..||.|| ||| |.|||||| |.||| ||
BPUM_2661___y 1339 GAGCAGATTATTCC-----ACAAGAGGAGCATCTT----CAGCCAACAGT 1379
BSNT_04392 261 GGTGGACAAACAGCAGGCA----ACGATT----TTGATCAATCAAAGCGG 302
.|| |||.||||| .|| |||||| |..||||.|||||
BPUM_2661___y 1380 TGT---CAATCAGCA-TCAAACGACGATTATCCTAAATCACTCAAA---- 1421
BSNT_04392 303 GACAAAGGAGGAATTCATGGCTGAGCTGAATGAGACTGCAAGGATGATTC 352
|.||.|.||.|||||.| |||||| |||.
BPUM_2661___y 1422 GTCAGATGAAGAATTTA--------CTGAAT---------------ATTT 1448
BSNT_04392 353 AGGAA--AA--AGCGGAAGC---TGAGCTGC------------AGC---- 379
| || || |||.|||.| |.|||||| |||
BPUM_2661___y 1449 A--AACCAATTAGCAGAAACCATTCAGCTGCGTATCGAGGAAGAGCTTGG 1496
BSNT_04392 380 --TGTCTGTCAGCATCGGCGTCAGCCAGCC-GTTTGATGCGCTGACAAAG 426
|.||..||||||||||..|||||| ||| ||||.|.|.|||.||.|.|
BPUM_2661___y 1497 TTTATCGATCAGCATCGGAATCAGCC-GCCAGTTTCAGGAGCTCACTATG 1545
BSNT_04392 427 GCGAAAACA-GCCTACGCTGAAGGTTCGGAGGCGTTGAAATACCGGCTTA 475
|| |||||| ||.|||..||||||....|||||.||.||||||.||||.|
BPUM_2661___y 1546 GC-AAAACAGGCTTACATTGAAGGAAAAGAGGCCTTAAAATACAGGCTCA 1594
BSNT_04392 476 AAGCGGAAAACAAGTCGATCATCTTTTACGAAGACCTTGACCAGAA---A 522
||||.||.||.||.||.||.|||||.||.||| |.|..||||.| |
BPUM_2661___y 1595 AAGCAGAGAAAAAATCCATTATCTTATATGAA---CATATCCAGCAAGGA 1641
BSNT_04392 523 AAAACCTTCAAAACCCATTTTCCAAAGCAGCTTCAGCATGAGCTGTTCGA 572
|||||.||.|||||||||||||||||||||.|.||||||||..|.||.||
BPUM_2661___y 1642 AAAACGTTTAAAACCCATTTTCCAAAGCAGTTGCAGCATGATTTATTTGA 1691
BSNT_04392 573 TGCCGTTAAAGCAGGAGA-CAAGGAGAAAGCGGATAAATGCCTGCACGCG 621
|||..|.||||||||.|| ||||| .||.||.|||.|.|...|.||.|.|
BPUM_2661___y 1692 TGCAATAAAAGCAGGTGATCAAGG-CAAGGCAGATCACTATTTACATGTG 1740
BSNT_04392 622 ATTTTGCAAGCCATTTTCACCCAGAA-----CACCAACCCGTATCAATTT 666
.|..|.|||.||||||||.|..|.|| .|||| .||.|.|.|
BPUM_2661___y 1741 CTCCTTCAATCCATTTTCTCTAAAAATGCGGGACCA-----CATGAGTAT 1785
BSNT_04392 667 CAAATCGCCATCGCCCGTTTTTTGAACCATGTGATTGAGCTGATGCATGT 716
||.||||||.|||||||||||||.|||.||.|||||||||||||||||.|
BPUM_2661___y 1786 CATATCGCCCTCGCCCGTTTTTTAAACAATTTGATTGAGCTGATGCATTT 1835
BSNT_04392 717 GCTTGGGATCGAATTGTTTGAGCTTGAAGAAAACAAAATGCTGTATGACC 766
||||||.||.||||||||||||.|||||||.||.||||||||||||||..
BPUM_2661___y 1836 GCTTGGCATTGAATTGTTTGAGGTTGAAGACAATAAAATGCTGTATGATA 1885
BSNT_04392 767 AAATTTTTGAGCTGAAAACGTTCGAGGATACCGAAAACTGGCTAAAAAAT 816
.|||||||||..|.||||||||.||.|||||||||...|||||.|||.||
BPUM_2661___y 1886 CAATTTTTGAATTTAAAACGTTTGAAGATACCGAAGCATGGCTGAAACAT 1935
BSNT_04392 817 GAGTTTATTGATCCGATGACAGACAAAGTGAACGCCCGCGCGGATGCCCA 866
|||.|.|||.|.||.||.|..|||.|..|...|||.||||.|||..|.||
BPUM_2661___y 1936 GAGATCATTCAGCCAATTATTGACCAGCTAGGCGCACGCGAGGAATCACA 1985
BSNT_04392 867 GTACAAAAATATTTCCGACAACATCATTCATATCATCCATCATGAGTTTG 916
.||||||||.||.||.||.||.||||||||||||||||||||.||.||.|
BPUM_2661___y 1986 ATACAAAAACATCTCAGAAAAGATCATTCATATCATCCATCAAGAATTCG 2035
BSNT_04392 917 AATCCGAATTGACACTGGACGAAATCGCGCGCA-GGCTGCATTACAACCC 965
|.||.||..|.|||.||||.|||||||| |.|| |.||.|||||||||||
BPUM_2661___y 2036 ATTCTGATCTCACATTGGATGAAATCGC-CACACGCCTACATTACAACCC 2084
BSNT_04392 966 AAATTATTTAAGCAGCATTTTCAAAAAAGAAATGGGTATTTCATTCAGCG 1015
|||||||||||||||.||.||.|.|||.|||||||.|||.||.||.||.|
BPUM_2661___y 2085 AAATTATTTAAGCAGTATCTTTAGAAAGGAAATGGATATCTCTTTTAGTG 2134
BSNT_04392 1016 AGTATGTCTCAAGCTACCGACACCATATGGCGAAAAGCTGGCTTGCCGAA 1065
|.|||.|||||..||||.||||||||.|.||.||||.||||||.|..|||
BPUM_2661___y 2135 AATATCTCTCATCCTACAGACACCATGTCGCCAAAAACTGGCTCGTGGAA 2184
BSNT_04392 1066 ACAGACATGGCGGTCAAGGACATTGCCGAAAAGCTGAAATATAAAAACTC 1115
||.||.|||.|.|||||.||.|||.|.|||||.|||||||||||||||.|
BPUM_2661___y 2185 ACCGATATGTCCGTCAAAGAAATTTCGGAAAAACTGAAATATAAAAACCC 2234
BSNT_04392 1116 GCAAAATTTTATCAGGTCTTTTAAAAAGCTGGAGGGGATTACACCGGGAA 1165
||||||.||.|||.|.||.||.|||||.||.||.||.|..||.||.||.|
BPUM_2661___y 2235 GCAAAACTTCATCCGTTCCTTCAAAAAACTAGAAGGCACGACCCCAGGCA 2284
BSNT_04392 1166 ACTACCG---CCAGCAAAAAAGAAGCATGTAA 1194
|.||||| |||| ||||||| ||||.|||
BPUM_2661___y 2285 AATACCGTGACCAG-AAAAAAG--GCATATAA 2313
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