Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04385 and BPUM_2657
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:56
# Commandline: needle
# -asequence dna-align/BSNT_04385.1.24716.seq
# -bsequence dna-align/BPUM_2657___yteT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04385-BPUM_2657___yteT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04385-BPUM_2657___yteT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04385
# 2: BPUM_2657___yteT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1341
# Identity: 697/1341 (52.0%)
# Similarity: 697/1341 (52.0%)
# Gaps: 411/1341 (30.6%)
# Score: 2206.5
#
#
#=======================================
BSNT_04385 1 ---------------------------------------------ATGTT 5
|||||
BPUM_2657___y 1 GTGAAACGGGTCGTAGTTTGCGGACTCAGTCATCGTGCGTTCAATATGTT 50
BSNT_04385 6 TATCAAACCGCTGTTGGAGCGGTTTTCAACT---CATTATGAGATTACGG 52
|||.||||||| |...||.||.|||||| | |||||...||||||.|
BPUM_2657___y 51 TATTAAACCGC--TCACAGAGGATTTCAA-TGAGCATTACAGGATTACAG 97
BSNT_04385 53 GATTGCTGGATGCCGATCCGAAACGTTTTGCCGTTTGCAAAAAGAAATTT 102
||.|..|.|||...||||...|.||.|.|.|..||||..|.|||...|||
BPUM_2657___y 98 GACTATTAGATATAGATCATCATCGGTATACACTTTGTCAGAAGCGTTTT 147
BSNT_04385 103 CCCGA-----GCTGGCC--CACGTGCCCGAGTTTAGC--GAAGATGCTTT 143
|| | ||.||.| |.||| |||..| |||||.||.||
BPUM_2657___y 148 CC--ATCACTGCGGGGCGTCTCGT-------TTTTTCATGAAGAGGCATT 188
BSNT_04385 144 TGACGAGATGATGCGCGTGTCAAAGCCTGATATCGTCATTGTGGCAGGCA 193
|||..|.|||.||...|...|||||||.|||||||||||.||||||||.|
BPUM_2657___y 189 TGATCAAATGGTGAAGGAAGCAAAGCCAGATATCGTCATCGTGGCAGGAA 238
BSNT_04385 194 GGGACGATACGCATGTCACATATATTGTAAAAAGC-CTTCAGTGGA--AT 240
||||.||.||.||||||||.|||||| |...|||| ||| || ||
BPUM_2657___y 239 GGGATGACACCCATGTCACGTATATT-TTGCAAGCACTT-----GACCAT 282
BSNT_04385 241 -AC--AGATGTAATTACTGAAAAACCAATGGTGACAACAGTGCAGGATGC 287
|| .|||||.||.||||||||.||.|||||.|||||||...|.||.||
BPUM_2657___y 283 GACCTCGATGTCATCACTGAAAAGCCGATGGTTACAACAGCTAAAGACGC 332
BSNT_04385 288 GAATCTGGTGCTTG---AAGCGGAGGCCAAAAGCGAAGGAAAAGTCACCG 334
.||....||..|.| |||...||| ||||..||||.||.|||||.|
BPUM_2657___y 333 CAAAAAAGTAATGGAAAAAGAAAAGG---AAAGTAAAGGGAAGGTCACAG 379
BSNT_04385 335 TCGCGTTTAACTATCGCTACAGCCCGTTTCATCGGAAAATAAAAGAAATG 384
||.|.||.||.||||||||||.|||.||||||||.|||||.||||||.|.
BPUM_2657___y 380 TCACTTTCAATTATCGCTACAACCCATTTCATCGAAAAATCAAAGAACTC 429
BSNT_04385 385 ATTCTGGACGGAAAAATAGGCAGGGTCACCTCCGTTGATTTAAATTGGTA 434
|||.|.||.|||||.||.||.|||||.||.||.|||||..|.|..|||..
BPUM_2657___y 430 ATTTTAGAAGGAAAGATTGGAAGGGTTACATCTGTTGAACTGAGCTGGCT 479
BSNT_04385 435 TATTGATACGTATCATGGCGCCAGCTATTTTAAACGCTGGAACAGGTCGA 484
.||||||||||||||||||||.||.|||||.|||.|.||||||.|..||.
BPUM_2657___y 480 CATTGATACGTATCATGGCGCTAGTTATTTCAAAAGGTGGAACCGCACGC 529
BSNT_04385 485 GACAGTTTTCCGGGGGTCTTTCTGTCCATAAATCAACACATCACTTTGAT 534
|.||.||.||.||.||.||.||.||.|||||||||||.|||||.||||||
BPUM_2657___y 530 GGCAATTCTCTGGCGGACTATCCGTTCATAAATCAACGCATCATTTTGAT 579
BSNT_04385 535 CTCGTCAATTGGTGGCTCGGGCAAAATCCGGAAG-AGGTATTTGCTTATG 583
.|.||||||||||||.||...|||||.|| .||| |.||||||||.||||
BPUM_2657___y 580 TTGGTCAATTGGTGGATCAATCAAAAACC-AAAGCAAGTATTTGCCTATG 628
BSNT_04385 584 GCGCCTTGAATTACTATGGGCCGG-----ACAGTGAGTGGAACCCCTTGC 628
|.||..|||||||.|| ||| |.|||...|||||.||.||||
BPUM_2657___y 629 GGGCGCTGAATTATTA-----CGGAGATCAAAGTCCTTGGAATCCTTTGC 673
BSNT_04385 629 CG---GAAGAAGACGGGCGTTTTTGCGGGACGTGCCGGGTCAAAGAAAAA 675
.| ||||||.||.|| |.||||||.||.||.|..||.||.||.|.|
BPUM_2657___y 674 AGGGAGAAGAAAACAGG---TATTGCGGAACATGTCATGTGAAGGATACA 720
BSNT_04385 676 TGCCACTACTATTCAAGGTGGCATCCCCGTTCCTCTAAAGCTTCTATAA- 724
||.||.||..|..||||.|||.||| |.|.|| ||.||
BPUM_2657___y 721 TGTCATTATGAAGCAAGATGGAATC---------CGAGAG----TAGAAC 757
BSNT_04385 725 ------------AGGATGATCATCTCGAA-----GCAGGAGACCAGTC-C 756
||||.||||||.||||| .|||||| ||..| |
BPUM_2657___y 758 GCACAAGGGTTGAGGACGATCATATCGAATCCGGTCAGGAG--CAAACGC 805
BSNT_04385 757 AGCTTATATACTGCA--TACAGGCCTGACGCGTGTATTTTTGACGAGGAA 804
||| .||||..|| ||..|.||.|||||.|||||||||||.||||||
BPUM_2657___y 806 AGC---AATACGCCAATTATCGCCCAGACGCCTGTATTTTTGATGAGGAA 852
BSNT_04385 805 ATTGACATCGAGGATACGTACGTGGCGGCAGTCAAATATGATGGCGGCGC 854
|||||||||||||||||.||.|||||..||||...||||||....||.||
BPUM_2657___y 853 ATTGACATCGAGGATACATATGTGGCATCAGTGGTATATGACCAAGGGGC 902
BSNT_04385 855 ACTGTTAAGCTACTCGATTATTTTTTCGGCCCCGTATGAAGGTTACCGGC 904
.||.||.|||||.||||||...||.||.||.||.||.|||||.|||||||
BPUM_2657___y 903 TCTTTTCAGCTATTCGATTCAATTCTCAGCACCCTACGAAGGATACCGGC 952
BSNT_04385 905 TGACGATCAACGGCACAAAAGGGCGTATTGAATCAAATGAATTTCA---- 950
|..|.|||||.||.||.||.||||||||||||.|||||||.|||||
BPUM_2657___y 953 TTGCTATCAATGGGACGAAGGGGCGTATTGAAACAAATGAGTTTCATGTG 1002
BSNT_04385 951 -CGTCCAGAATTCCGTTTGCTTTTCCTGA--------------------- 978
|.||.||||||||.|||...||.||.||
BPUM_2657___y 1003 CCATCAAGAATTCCTTTTCAATTCCCAGAACAGACGATTTCTTATTATCC 1052
BSNT_04385 978 -------------------------------------------------- 978
BPUM_2657___y 1053 GATGTTTGGGGCAAAAGAGACGATTGAAGTCGTGAAGCAGCCTGGGGGAC 1102
BSNT_04385 978 -------------------------------------------------- 978
BPUM_2657___y 1103 ATGGCGGCGGAGATCCTCTGCTTTTGACGGATTTATTTATCGGGAAAGAT 1152
BSNT_04385 978 -------------------------------------------------- 978
BPUM_2657___y 1153 CCTTTAATTCACTATGACATATCAGCAGGAGCAGAGGCTGGTGCTTATTC 1202
BSNT_04385 978 -------------------------------------------------- 978
BPUM_2657___y 1203 GATTGCACTTGGAGAAGGCATGTGGCGGTCTGTTGCAGAGAAACGCCCAA 1252
BSNT_04385 978 ----------------------------------------- 978
BPUM_2657___y 1253 TCGACATAGAAGAGCTTCTTCAAAAAGAGACGGTGTCATAA 1293
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