Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04380 and BPUM_2652

See Amino acid alignment / Visit BSNT_04380 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:56
# Commandline: needle
#    -asequence dna-align/BSNT_04380.1.24716.seq
#    -bsequence dna-align/BPUM_2652___opuD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04380-BPUM_2652___opuD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04380-BPUM_2652___opuD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04380
# 2: BPUM_2652___opuD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1560
# Identity:     659/1560 (42.2%)
# Similarity:   659/1560 (42.2%)
# Gaps:         684/1560 (43.8%)
# Score: 2258.5
# 
#
#=======================================

BSNT_04380         0 --------------------------------------------------      0
                                                                       
BPUM_2652___o      1 GTGAAAAACGTATCAAGTGTATTTTGGATTGTGATTGCGATCACATTTGT     50

BSNT_04380         0 --------------------------------------------------      0
                                                                       
BPUM_2652___o     51 TGCCGTTATGTGGGGAGCTTTTTCTCCAGAAACATTACAAAATGTCACAG    100

BSNT_04380         0 --------------------------------------------------      0
                                                                       
BPUM_2652___o    101 ATCAGATTCAAACTTACATTACAAACGACTTTGGCTGGTATTATTTGATA    150

BSNT_04380         0 --------------------------------------------------      0
                                                                       
BPUM_2652___o    151 GTGATTTCACTACTTGTCGGCTTTTGTCTATTCTTTATTTTTAGTCCAAT    200

BSNT_04380         0 --------------------------------------------------      0
                                                                       
BPUM_2652___o    201 CGGAAAAATTACGTTAGGAAAACCAGGTGAAGAGCCTGAATTTGGCCTTT    250

BSNT_04380         0 --------------------------------------------------      0
                                                                       
BPUM_2652___o    251 TTTCTTGGTTTGCGATGCTATTTAGTGCCGGTATGGGAATTGGTCTTGTC    300

BSNT_04380         0 --------------------------------------------------      0
                                                                       
BPUM_2652___o    301 TTTTATGGGGCCGCTGAACCAATCAGTCACTATGCAATTCAATCACCAAC    350

BSNT_04380         0 --------------------------------------------------      0
                                                                       
BPUM_2652___o    351 AGGAGAGACTGAAACTGCACAAGCCTTCCGCGATTCCCTTCGTTATACAT    400

BSNT_04380         0 --------------------------------------------------      0
                                                                       
BPUM_2652___o    401 TTTTCCACTGGGGACTTCATGCATGGGCCATTTATGCGATTGTCGCATTA    450

BSNT_04380         0 --------------------------------------------------      0
                                                                       
BPUM_2652___o    451 TGCATCGCATACTTTAAATTTAGAAAAGATGCGCCTGGATTAATTAGTTC    500

BSNT_04380         0 --------------------------------------------------      0
                                                                       
BPUM_2652___o    501 CACCTTATACCCAGTATTCGGAAACAGAATTCATGGATGGATTGGAAAAA    550

BSNT_04380         0 --------------------------------------------------      0
                                                                       
BPUM_2652___o    551 CGATCGATTGTATCGCAGTGTTTGCAACAGTAGTTGGCGTAGCCACAAGT    600

BSNT_04380         1 -----------------------------TTGAATTACC----TGTTCGG     17
                                                  |.||.|.|||    |.|||||
BPUM_2652___o    601 TTAGGGCTAGGTGCCGCACAAATTAATGGTGGATTAACCTATTTATTCGG    650

BSNT_04380        18 CATTCCGAATGCGTTTATCGTC-CAATTGGTTTTAATCATT---ATTGTG     63
                     ||||||.|||...||| |.|.| ||   |.|..||||.|||   ||.||.
BPUM_2652___o    651 CATTCCAAATAACTTT-TTGACTCA---GCTCATAATTATTGCGATCGTA    696

BSNT_04380        64 ACAGTGCTCTTTTTACTTTCTGCGTGGAGCGGACTCGGAAAAGGAATTAA    113
                     ||.||.||.||.||..|.|||||.|||||||||.|.||.|||||.|||||
BPUM_2652___o    697 ACTGTTCTGTTCTTGATCTCTGCTTGGAGCGGAATTGGTAAAGGTATTAA    746

BSNT_04380       114 GTATTTAAGCAACACAAACATGGTATTGGCCGGATTGTTA-----ATGTT    158
                     .||||||||.||..|.||.|||.||||.||     ||.||     |||.|
BPUM_2652___o    747 ATATTTAAGTAATTCGAATATGATATTTGC-----TGCTATACTCATGAT    791

BSNT_04380       159 GTTTATGCTCGTTGTCGGGCCTACAGTGCTGATCATGAACTCATTTACAG    208
                     .|||.|.|||.|||..||.||.||.||..|.||..|.||.||||||||||
BPUM_2652___o    792 CTTTTTACTCTTTGCTGGACCAACTGTTTTTATTTTAAATTCATTTACAG    841

BSNT_04380       209 ATTCTATCGGACAATACAT-TCAAAATATCGTTCAAATGAGCTTCAGACT    257
                     ||||.||||||||||||.| || .|||||.||.|||||||||||.|||.|
BPUM_2652___o    842 ATTCGATCGGACAATACTTATC-GAATATTGTACAAATGAGCTTTAGATT    890

BSNT_04380       258 GACACCGAACGATCCTGAAAAACGCGAATGGATTAACAGCTGGACGATTT    307
                     ..||||.||.|||||.|||||..|.|||||||||||..|.||||||||.|
BPUM_2652___o    891 ATCACCAAATGATCCAGAAAAGAGAGAATGGATTAATGGTTGGACGATCT    940

BSNT_04380       308 TCTATTGGGCATGGTGGATTTCCTGGTCTCCATTTGTCGGCATTTTCATC    357
                     |.|||||||||||||||||.||.|||||||||||.|||||||||||.||.
BPUM_2652___o    941 TTTATTGGGCATGGTGGATCTCTTGGTCTCCATTCGTCGGCATTTTTATT    990

BSNT_04380       358 GCCCGTGTATCCAGAGGCCGGACGATCCGAGAATTTTTAATTGGCGTCTT    407
                     ||..|.||.||..|.||..|.||.||.|||||||||||||||||.|||||
BPUM_2652___o    991 GCGAGAGTCTCACGCGGAAGAACCATTCGAGAATTTTTAATTGGTGTCTT   1040

BSNT_04380       408 GGTGACACCTTGTATTTTGACATTTCTATGGTTCTCCATTTTCGGCGTAT    457
                     .|||.|.||||..||..|....||.|||||||||||.||.|||||.||||
BPUM_2652___o   1041 AGTGGCTCCTTCAATCCTCGTGTTCCTATGGTTCTCTATCTTCGGAGTAT   1090

BSNT_04380       458 CAGCCATGGATCTCCAGCAAAAAGGCACGTTCAATGTAGC----AAAGCT    503
                     ||||.||||||.|.||.||||||...|...|..|||||||    |    |
BPUM_2652___o   1091 CAGCTATGGATTTACAACAAAAAAATATTATAGATGTAGCTGGTA----T   1136

BSNT_04380       504 GTCCACTGAAACGATGCTGTTCGGAACACTTG------ATCACTATCCGC    547
                     |.|.|||||||||||||||||.||      ||      ||||.||.||||
BPUM_2652___o   1137 GCCGACTGAAACGATGCTGTTTGG------TGTTTTAAATCAATACCCGC   1180

BSNT_04380       548 TGACAATGGTGACATCGATCCTTGCATTGATTCTGATCGCAGTATTCTTT    597
                     |..|.|||.|.|||||.||..|.|||.|.|||.|.||.||.|||||||||
BPUM_2652___o   1181 TTGCCATGATTACATCCATTTTGGCACTTATTTTAATTGCTGTATTCTTT   1230

BSNT_04380       598 ATCACGTCTGCTGATTCAGCTACATTCGTGCTGGGCATGCAGACGTCGTA    647
                     |||||.||.||.||||||||.||.||.||.||.||.||||||||..|.||
BPUM_2652___o   1231 ATCACATCAGCAGATTCAGCCACCTTTGTTCTAGGAATGCAGACAACCTA   1280

BSNT_04380       648 CGGTTCTTTAAATCCGGCGAATTCTGTGAAACTCAGCTGGGGTATCATTC    697
                     .||.||.||||||||.||||||..|||.||..||||||||||.||.||.|
BPUM_2652___o   1281 TGGCTCATTAAATCCTGCGAATAGTGTAAAGATCAGCTGGGGCATTATCC   1330

BSNT_04380       698 AGTCCGCCATGGCGGCTGTGCTCCTATATTCCGGAGGGCTTGCCGCTTTG    747
                     |.||.||..|.|||||.|||||..|||.|||.||.||.|||...||.|||
BPUM_2652___o   1331 AATCAGCTGTTGCGGCAGTGCTATTATTTTCAGGCGGACTTCAAGCCTTG   1380

BSNT_04380       748 CAGAACACAGCGATTCTGGCAGCGCTGCCGTTTTCTATCGTTATCCTGCT    797
                     ||.||.|||||.|..||.||.||..|||||||.||.||.||.||..|..|
BPUM_2652___o   1381 CAAAATACAGCAAAACTCGCCGCCTTGCCGTTCTCCATTGTCATTATCTT   1430

BSNT_04380       798 GATGATTGCCTCTCTCTATCAATCGCTCTCAAAA----GAAAGAAGAGAG    843
                     ||||.|||..||.||.|||.||||..|    |||    |||.|||.||..
BPUM_2652___o   1431 GATGGTTGTGTCACTGTATAAATCATT----AAATGCTGAACGAAAAGCC   1476

BSNT_04380       844 ATCAAAAAAGCGGAGAAACTCGATAAACCGAGAAGTCCAAGAGTGAAAAA    893
                     ||||||.||||..|.|||.||.|||||||.||||||||||||||.|||||
BPUM_2652___o   1477 ATCAAACAAGCTAACAAAGTCAATAAACCAAGAAGTCCAAGAGTAAAAAA   1526

BSNT_04380       894 AGCATATTAA    903
                     ||||||.   
BPUM_2652___o   1527 AGCATAA---   1533


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