Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04380 and BPUM_2652
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:56
# Commandline: needle
# -asequence dna-align/BSNT_04380.1.24716.seq
# -bsequence dna-align/BPUM_2652___opuD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04380-BPUM_2652___opuD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04380-BPUM_2652___opuD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04380
# 2: BPUM_2652___opuD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1560
# Identity: 659/1560 (42.2%)
# Similarity: 659/1560 (42.2%)
# Gaps: 684/1560 (43.8%)
# Score: 2258.5
#
#
#=======================================
BSNT_04380 0 -------------------------------------------------- 0
BPUM_2652___o 1 GTGAAAAACGTATCAAGTGTATTTTGGATTGTGATTGCGATCACATTTGT 50
BSNT_04380 0 -------------------------------------------------- 0
BPUM_2652___o 51 TGCCGTTATGTGGGGAGCTTTTTCTCCAGAAACATTACAAAATGTCACAG 100
BSNT_04380 0 -------------------------------------------------- 0
BPUM_2652___o 101 ATCAGATTCAAACTTACATTACAAACGACTTTGGCTGGTATTATTTGATA 150
BSNT_04380 0 -------------------------------------------------- 0
BPUM_2652___o 151 GTGATTTCACTACTTGTCGGCTTTTGTCTATTCTTTATTTTTAGTCCAAT 200
BSNT_04380 0 -------------------------------------------------- 0
BPUM_2652___o 201 CGGAAAAATTACGTTAGGAAAACCAGGTGAAGAGCCTGAATTTGGCCTTT 250
BSNT_04380 0 -------------------------------------------------- 0
BPUM_2652___o 251 TTTCTTGGTTTGCGATGCTATTTAGTGCCGGTATGGGAATTGGTCTTGTC 300
BSNT_04380 0 -------------------------------------------------- 0
BPUM_2652___o 301 TTTTATGGGGCCGCTGAACCAATCAGTCACTATGCAATTCAATCACCAAC 350
BSNT_04380 0 -------------------------------------------------- 0
BPUM_2652___o 351 AGGAGAGACTGAAACTGCACAAGCCTTCCGCGATTCCCTTCGTTATACAT 400
BSNT_04380 0 -------------------------------------------------- 0
BPUM_2652___o 401 TTTTCCACTGGGGACTTCATGCATGGGCCATTTATGCGATTGTCGCATTA 450
BSNT_04380 0 -------------------------------------------------- 0
BPUM_2652___o 451 TGCATCGCATACTTTAAATTTAGAAAAGATGCGCCTGGATTAATTAGTTC 500
BSNT_04380 0 -------------------------------------------------- 0
BPUM_2652___o 501 CACCTTATACCCAGTATTCGGAAACAGAATTCATGGATGGATTGGAAAAA 550
BSNT_04380 0 -------------------------------------------------- 0
BPUM_2652___o 551 CGATCGATTGTATCGCAGTGTTTGCAACAGTAGTTGGCGTAGCCACAAGT 600
BSNT_04380 1 -----------------------------TTGAATTACC----TGTTCGG 17
|.||.|.||| |.|||||
BPUM_2652___o 601 TTAGGGCTAGGTGCCGCACAAATTAATGGTGGATTAACCTATTTATTCGG 650
BSNT_04380 18 CATTCCGAATGCGTTTATCGTC-CAATTGGTTTTAATCATT---ATTGTG 63
||||||.|||...||| |.|.| || |.|..||||.||| ||.||.
BPUM_2652___o 651 CATTCCAAATAACTTT-TTGACTCA---GCTCATAATTATTGCGATCGTA 696
BSNT_04380 64 ACAGTGCTCTTTTTACTTTCTGCGTGGAGCGGACTCGGAAAAGGAATTAA 113
||.||.||.||.||..|.|||||.|||||||||.|.||.|||||.|||||
BPUM_2652___o 697 ACTGTTCTGTTCTTGATCTCTGCTTGGAGCGGAATTGGTAAAGGTATTAA 746
BSNT_04380 114 GTATTTAAGCAACACAAACATGGTATTGGCCGGATTGTTA-----ATGTT 158
.||||||||.||..|.||.|||.||||.|| ||.|| |||.|
BPUM_2652___o 747 ATATTTAAGTAATTCGAATATGATATTTGC-----TGCTATACTCATGAT 791
BSNT_04380 159 GTTTATGCTCGTTGTCGGGCCTACAGTGCTGATCATGAACTCATTTACAG 208
.|||.|.|||.|||..||.||.||.||..|.||..|.||.||||||||||
BPUM_2652___o 792 CTTTTTACTCTTTGCTGGACCAACTGTTTTTATTTTAAATTCATTTACAG 841
BSNT_04380 209 ATTCTATCGGACAATACAT-TCAAAATATCGTTCAAATGAGCTTCAGACT 257
||||.||||||||||||.| || .|||||.||.|||||||||||.|||.|
BPUM_2652___o 842 ATTCGATCGGACAATACTTATC-GAATATTGTACAAATGAGCTTTAGATT 890
BSNT_04380 258 GACACCGAACGATCCTGAAAAACGCGAATGGATTAACAGCTGGACGATTT 307
..||||.||.|||||.|||||..|.|||||||||||..|.||||||||.|
BPUM_2652___o 891 ATCACCAAATGATCCAGAAAAGAGAGAATGGATTAATGGTTGGACGATCT 940
BSNT_04380 308 TCTATTGGGCATGGTGGATTTCCTGGTCTCCATTTGTCGGCATTTTCATC 357
|.|||||||||||||||||.||.|||||||||||.|||||||||||.||.
BPUM_2652___o 941 TTTATTGGGCATGGTGGATCTCTTGGTCTCCATTCGTCGGCATTTTTATT 990
BSNT_04380 358 GCCCGTGTATCCAGAGGCCGGACGATCCGAGAATTTTTAATTGGCGTCTT 407
||..|.||.||..|.||..|.||.||.|||||||||||||||||.|||||
BPUM_2652___o 991 GCGAGAGTCTCACGCGGAAGAACCATTCGAGAATTTTTAATTGGTGTCTT 1040
BSNT_04380 408 GGTGACACCTTGTATTTTGACATTTCTATGGTTCTCCATTTTCGGCGTAT 457
.|||.|.||||..||..|....||.|||||||||||.||.|||||.||||
BPUM_2652___o 1041 AGTGGCTCCTTCAATCCTCGTGTTCCTATGGTTCTCTATCTTCGGAGTAT 1090
BSNT_04380 458 CAGCCATGGATCTCCAGCAAAAAGGCACGTTCAATGTAGC----AAAGCT 503
||||.||||||.|.||.||||||...|...|..||||||| | |
BPUM_2652___o 1091 CAGCTATGGATTTACAACAAAAAAATATTATAGATGTAGCTGGTA----T 1136
BSNT_04380 504 GTCCACTGAAACGATGCTGTTCGGAACACTTG------ATCACTATCCGC 547
|.|.|||||||||||||||||.|| || ||||.||.||||
BPUM_2652___o 1137 GCCGACTGAAACGATGCTGTTTGG------TGTTTTAAATCAATACCCGC 1180
BSNT_04380 548 TGACAATGGTGACATCGATCCTTGCATTGATTCTGATCGCAGTATTCTTT 597
|..|.|||.|.|||||.||..|.|||.|.|||.|.||.||.|||||||||
BPUM_2652___o 1181 TTGCCATGATTACATCCATTTTGGCACTTATTTTAATTGCTGTATTCTTT 1230
BSNT_04380 598 ATCACGTCTGCTGATTCAGCTACATTCGTGCTGGGCATGCAGACGTCGTA 647
|||||.||.||.||||||||.||.||.||.||.||.||||||||..|.||
BPUM_2652___o 1231 ATCACATCAGCAGATTCAGCCACCTTTGTTCTAGGAATGCAGACAACCTA 1280
BSNT_04380 648 CGGTTCTTTAAATCCGGCGAATTCTGTGAAACTCAGCTGGGGTATCATTC 697
.||.||.||||||||.||||||..|||.||..||||||||||.||.||.|
BPUM_2652___o 1281 TGGCTCATTAAATCCTGCGAATAGTGTAAAGATCAGCTGGGGCATTATCC 1330
BSNT_04380 698 AGTCCGCCATGGCGGCTGTGCTCCTATATTCCGGAGGGCTTGCCGCTTTG 747
|.||.||..|.|||||.|||||..|||.|||.||.||.|||...||.|||
BPUM_2652___o 1331 AATCAGCTGTTGCGGCAGTGCTATTATTTTCAGGCGGACTTCAAGCCTTG 1380
BSNT_04380 748 CAGAACACAGCGATTCTGGCAGCGCTGCCGTTTTCTATCGTTATCCTGCT 797
||.||.|||||.|..||.||.||..|||||||.||.||.||.||..|..|
BPUM_2652___o 1381 CAAAATACAGCAAAACTCGCCGCCTTGCCGTTCTCCATTGTCATTATCTT 1430
BSNT_04380 798 GATGATTGCCTCTCTCTATCAATCGCTCTCAAAA----GAAAGAAGAGAG 843
||||.|||..||.||.|||.||||..| ||| |||.|||.||..
BPUM_2652___o 1431 GATGGTTGTGTCACTGTATAAATCATT----AAATGCTGAACGAAAAGCC 1476
BSNT_04380 844 ATCAAAAAAGCGGAGAAACTCGATAAACCGAGAAGTCCAAGAGTGAAAAA 893
||||||.||||..|.|||.||.|||||||.||||||||||||||.|||||
BPUM_2652___o 1477 ATCAAACAAGCTAACAAAGTCAATAAACCAAGAAGTCCAAGAGTAAAAAA 1526
BSNT_04380 894 AGCATATTAA 903
||||||.
BPUM_2652___o 1527 AGCATAA--- 1533
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