Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04377 and BPUM_2649
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:55
# Commandline: needle
# -asequence dna-align/BSNT_04377___ytgP.1.24716.seq
# -bsequence dna-align/BPUM_2649___ytgP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04377___ytgP-BPUM_2649___ytgP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04377___ytgP-BPUM_2649___ytgP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04377___ytgP
# 2: BPUM_2649___ytgP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1755
# Identity: 1164/1755 (66.3%)
# Similarity: 1164/1755 (66.3%)
# Gaps: 237/1755 (13.5%)
# Score: 3656.5
#
#
#=======================================
BSNT_04377___ 1 ---------------ATGTCAAGCAAACTGTTAAGAGGCACGTTTGTATT 35
|||||.|..||||||.|..|.||.|||||.||.||
BPUM_2649___y 1 ATGGTGGTTAAGCGTATGTCTAATAAACTGCTTCGTGGTACGTTGGTTTT 50
BSNT_04377___ 36 AACGCTCGGTACATATATATCGCGGATTCTGGGGATGGTCTATTTAATTC 85
||||.|.||.||.|||.|.||.||.|||||.||.|||.|.||||||||||
BPUM_2649___y 51 AACGATAGGGACTTATCTCTCTCGTATTCTTGGTATGATTTATTTAATTC 100
BSNT_04377___ 86 CCTTCAGCATTATGGTCGGGGCGACAGGCGGTGCATTATTTCAATACGGA 135
|.||.|||...|||||.||.||.||.||.||.||..||||||||||.|||
BPUM_2649___y 101 CATTTAGCGCAATGGTTGGAGCTACTGGTGGAGCGCTATTTCAATATGGA 150
BSNT_04377___ 136 TACAACCAATACACTTTATTTTTGAATATTGCTACGATGGGCTTTCCGGC 185
|||||.||.||.||..|.|||||.|.||||||||||.|.||.||.||..|
BPUM_2649___y 151 TACAATCAGTATACGATCTTTTTAAGTATTGCTACGCTTGGTTTCCCAAC 200
BSNT_04377___ 186 CGCTGTTTCTAAATTTGTTTCCAAATATAATTCAAAAGGGGATTATGAGA 235
.||.||.||.|||||||||||.|||||||||.|||..||.||||||||||
BPUM_2649___y 201 AGCGGTATCAAAATTTGTTTCTAAATATAATGCAATTGGCGATTATGAGA 250
BSNT_04377___ 236 CAAGCAGGAAAATGCTCAAGGCGGGCATGTCGGTTATGCTCGTCACAGGA 285
|||..||.||||||.|||.|||.||.||||||||.|||||.|||||.||.
BPUM_2649___y 251 CAACAAGAAAAATGTTCAGGGCAGGTATGTCGGTCATGCTTGTCACCGGG 300
BSNT_04377___ 286 ATGATAGCCTTTTTCATTCTGTATCTATCGGCTCCGATGTTTGCGGAAAT 335
||.||.|||||||..|||.|.|||.||.|.||.|||||.||||||.|.||
BPUM_2649___y 301 ATTATCGCCTTTTCTATTTTATATTTAACCGCACCGATTTTTGCGAAGAT 350
BSNT_04377___ 336 ATC-GCTGGGAGGCAAGGAT--AATAA------CGGCTTGACAATTGATC 376
|| |||.|| .|||| |||.| |||.|||||..|.||||
BPUM_2649___y 351 -TCAGCTTGG-----CGGATCGAATGAAACAGGCGGTTTGACTGTCGATC 394
BSNT_04377___ 377 ATGTCGTTTATGTCATCCGCATGGTCAGCTTAGCGCTTTTGGTCGTACCG 426
|.||.||.|||||.||.||.||||||||.||||..||||||||.|||||.
BPUM_2649___y 395 AAGTAGTATATGTGATTCGGATGGTCAGTTTAGGTCTTTTGGTTGTACCT 444
BSNT_04377___ 427 ATTATGAGCCTTGTCCGCGGATTCTTTCAAGGGCACCAAATGATGGGTCC 476
||||||||.|||||.||.||.|.|||.|||||||||...||||||||.||
BPUM_2649___y 445 ATTATGAGTCTTGTGCGAGGGTACTTCCAAGGGCACTCTATGATGGGACC 494
BSNT_04377___ 477 GACAGCTGTTTCCCAAGTCGTTGAACAGATTGTCCGCATCATCTTTCTAT 526
||||||||||||||||||..||||.|||.|||||.|.||||||||.||||
BPUM_2649___y 495 GACAGCTGTTTCCCAAGTTATTGAGCAGCTTGTCAGAATCATCTTCCTAT 544
BSNT_04377___ 527 TGAGTGCGACATTCTTGATTTTGAAGGTTTTCAACGGCGGCCTTGTCATC 576
|.|..||.||.||..|.|||||.||.||..|..|||||||.||||||||.
BPUM_2649___y 545 TAACAGCAACGTTTATTATTTTAAAAGTGCTTGACGGCGGTCTTGTCATT 594
BSNT_04377___ 577 GCTGTGGGCTATGCAACCTTCGCAGCGCTGATCGGTGCCTTCGGGGGGCT 626
|||||.||.|||||.||.||.|||||.||||||||.||.||.||.|||.|
BPUM_2649___y 595 GCTGTCGGTTATGCTACATTTGCAGCACTGATCGGCGCATTTGGCGGGTT 644
BSNT_04377___ 627 GGTCGTGCTTTATATTTATTGGAACAAACGGAAGGGCAGCCTGCTGGCGA 676
..||..|||||||.|.||||||...||.||.||||...|.||..|..|||
BPUM_2649___y 645 ATTCACGCTTTATTTATATTGGCTGAAGCGCAAGGATCGGCTCTTATCGA 694
BSNT_04377___ 677 TGATGCCGAATACGGG-------TCCGAC--AGCAAACCTAAGCTACAAA 717
||..|||||||||.|| ||.||| |.||.| |||||
BPUM_2649___y 695 TGCAGCCGAATACAGGTGCTTCCTCTGACTTATCATA--TAAGC------ 736
BSNT_04377___ 718 AAAATGTTTTTCGAGCTGTTCAGCTATGCTGCTCCGTACGTTTTTGTCGG 767
||||||||...|||||.||.||||||||.||.|||||.||.|||||.||
BPUM_2649___y 737 -AAATGTTTACAGAGCTATTTAGCTATGCGGCACCGTATGTGTTTGTTGG 785
BSNT_04377___ 768 ACTAGCCATCCC--TTTGTATAAC---TATATTGATACAAATACGTTTAA 812
|||.||.||.|| ||| || ||||||||||||||||||.||||
BPUM_2649___y 786 ACTGGCGATTCCAATTT-----ACTCTTATATTGATACAAATACGATTAA 830
BSNT_04377___ 813 CAAAGCGATGATTGAAGCCGGTCATCAAGCCAT-----CAGCCAGGACAT 857
||.|||.|||||||.|.|.||.|||||.|..|| |||| ||.|.|
BPUM_2649___y 831 CAGAGCCATGATTGCATCAGGACATCAGGATATTAGTACAGC--GGTCTT 878
BSNT_04377___ 858 GCTTGCGATTCTA-----ACCCTGTATGTTCAGAAGCTCGTGATGATCCC 902
| |||| ||..|.|||.|.|.|||||||||||||||.||
BPUM_2649___y 879 G--------TCTATCGTGACGTTATATTTACCGAAGCTCGTGATGATTCC 920
BSNT_04377___ 903 GGTTTCCCTAGCAACTGCTTTCGGACTGACATTAATTCCAACGATTACTG 952
.||.||.||.|||||.||.||.||..|.||.||.||||||||||||||.|
BPUM_2649___y 921 TGTGTCGCTTGCAACAGCGTTTGGTTTAACCTTGATTCCAACGATTACGG 970
BSNT_04377___ 953 AATCGTTTACAAGC-GGAAACTATAAGCTGTTAAATCAG-CAGATTAATC 1000
||||.||||| ||| .|.|||||.|||||..|.||| || ||.|||.|||
BPUM_2649___y 971 AATCATTTAC-AGCTCGTAACTACAAGCTACTCAAT-AGACAAATTGATC 1018
BSNT_04377___ 1001 AAACGATGCAGACGATCCTGTT-TTTAATTATTCCGGCTG-----TT--G 1042
|.||||||||| ||| |||.|||.|||..|||| || .
BPUM_2649___y 1019 AGACGATGCAG--------GTTATTTTATTTTTCGTGCTGCCTGCTTCAT 1060
BSNT_04377___ 1043 TCGGGATCTCTCTATTGTCAGGACCGACGTATACGTTCTTTTACGGGTCA 1092
|.||.|||||...||||.|.||||||...|||..|||.||.|| ||
BPUM_2649___y 1061 TTGGTATCTCGGCATTGGCTGGACCGGTTTATTGGTTTTTCTA----TC- 1105
BSNT_04377___ 1093 GAGAGCC----TTCACCCTGA-ACTGGG--GGCAAACATTTTGCTATGGT 1135
|| ||||.||||| |.|||| |.| .||||||.|.||||
BPUM_2649___y 1106 -----CCTCTGTTCATCCTGAGATTGGGATGTC---TATTTTGTTCTGGT 1147
BSNT_04377___ 1136 ATTCGCCAGTCGCGATTTTGTTCTCTTTGTTTACAGTCAACGCAGCCATT 1185
||.|.||.||.|||.|.|||||.|||.|.||.||..|.||||||||.|||
BPUM_2649___y 1148 ATGCACCTGTTGCGTTATTGTTTTCTCTATTCACCATTAACGCAGCGATT 1197
BSNT_04377___ 1186 CTGCAGGGCATCAATAAGCAAAAATTTGCGGTTGTCAGCCTTGTGATCGG 1235
.|||||||.||.||.||||||||.|||||..|.|||||.||..||.|.||
BPUM_2649___y 1198 TTGCAGGGAATTAACAAGCAAAAGTTTGCCATCGTCAGTCTGTTGTTAGG 1247
BSNT_04377___ 1236 TGTCGTGATCAAGCTTGTGCTGAATGTTCCGCTGATCAAGCTGATGCAGG 1285
..||.|.||.||....||.|||||..||||.||.|||| ||.||
BPUM_2649___y 1248 GATCATCATTAAAACGGTTCTGAACATTCCACTCATCA-------GCTGG 1290
BSNT_04377___ 1286 CTGAC--GGA----GCGATTT--TAGCGACGGCGCTT-GGATATATCGCT 1326
|| || ||| ||..|.| |.|||||.|| ||| ||.||||..||.
BPUM_2649___y 1291 CT-ACAAGGAAATGGCTCTGTGCTTGCGACTGC-CTTAGGTTATAGTGCA 1338
BSNT_04377___ 1327 TCC--CTTTTATATGGGTTTATCATGATTAAGCGCCATGCAGGCTATTCG 1374
||| |||.||||| ||||||||||||||||||||||||.||||||||
BPUM_2649___y 1339 TCCATCTTGTATAT--GTTTATCATGATTAAGCGCCATGCTGGCTATTC- 1385
BSNT_04377___ 1375 TAT-----AAGATACTAGTT--AAACGAACTGTTTTGATGCTTGTA--TT 1415
|| |.||| || ||||||..|.||.|.|| |.||| ||
BPUM_2649___y 1386 -ATTCCGCAGGAT-----TTTCAAACGATTTATTCTCAT--TGGTATTTT 1427
BSNT_04377___ 1416 ATCAGCCATTATGG--GTATTGCCGTGAAAATCGTG-CAGTGGGTATTAG 1462
|.|.||.||||||| ||..||.||| || ||| || || |..
BPUM_2649___y 1428 AACTGCGATTATGGCTGTCGTGGCGT----AT-GTGACA-TG-----TCA 1466
BSNT_04377___ 1463 GCTTCT--------TTATTTCCTATCAGGATGGCCAGCTG-CAAGCTGCG 1503
||||.| |.||.||.|||.|.|.||| |..|| .|| ||||
BPUM_2649___y 1467 GCTTGTGAGCCAAGTGATATCGTATGAAGGTGG--AATTGTTAA--TGCG 1512
BSNT_04377___ 1504 ---ATTGTTGTGGTGATCGC---GGCCGCTGTTGGCGGAGCTGTCTACCT 1547
||.||..|..||||..| |..|.|||.|||||| |||.||.||
BPUM_2649___y 1513 GGTATCGTCATTCTGATTTCAATGATCACTGGTGGCGG---TGTGTATCT 1559
BSNT_04377___ 1548 GTATTGCGGCTACCGATTA-------GGATT---------TTTACAGAAA 1581
||..| ||.| ||| ||||| |.|||
BPUM_2649___y 1560 GTTCT-----TATC--TTATAAGGTTGGATTACTTGAGCGTGTAC----- 1597
BSNT_04377___ 1582 ATTTTAGGCCGCCGTTTGCC-AGGTTTCTTAAGGAAAGGCAGACATGCAG 1630
|.|||.|||||.|||| |..||| |||||.||| .|||
BPUM_2649___y 1598 ----TCGGCAGCCGTATGCCGAAATTT-TTAAGAAAA--AAGA------- 1633
BSNT_04377___ 1631 GCTGA 1635
|.|.|
BPUM_2649___y 1634 GTTAA 1638
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