Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04362 and BPUM_2639

See Amino acid alignment / Visit BSNT_04362 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:54
# Commandline: needle
#    -asequence dna-align/BSNT_04362___ytmP.1.24716.seq
#    -bsequence dna-align/BPUM_2639___ytmP.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04362___ytmP-BPUM_2639___ytmP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04362___ytmP-BPUM_2639___ytmP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04362___ytmP
# 2: BPUM_2639___ytmP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 853
# Identity:     576/853 (67.5%)
# Similarity:   576/853 (67.5%)
# Gaps:          95/853 (11.1%)
# Score: 1873.0
# 
#
#=======================================

BSNT_04362___      1 ------------ATGAACTGGTTGGGACAATTACTAGGTAGCGATTGGGA     38
                                 ||||||||||||||||||.||.||||||||||.|||.|
BPUM_2639___y      1 TTGAAAATTGATATGAACTGGTTGGGACAAATATTAGGTAGCGAATGGCA     50

BSNT_04362___     39 GATCTTCCCCGCCGGAGGAGCTACAGGAGATGCATATTATGCGAAACATA     88
                     .||||..||.||.|||||.|||||.||||||||.||.|..||.|.|||.|
BPUM_2639___y     51 CATCTCTCCTGCTGGAGGCGCTACGGGAGATGCGTACTTCGCAACACACA    100

BSNT_04362___     89 ACGGGCAGCAGCTTTTTTTAAAACGTAATAGCTCACCTTTTTTAGCTGTT    138
                     |.|..||..||||.|||||||||||.||||..|||||.|||.|.||.|||
BPUM_2639___y    101 ATGACCAAAAGCTATTTTTAAAACGCAATACGTCACCGTTTCTTGCGGTT    150

BSNT_04362___    139 TTATCCGCCGAAGGCATTGTTCCGAAGCTGGTTTGGACAAAACGGATGGA    188
                     ||.||.||.|||||||||||.||||||||.||.|||||||||||||||||
BPUM_2639___y    151 TTGTCAGCTGAAGGCATTGTGCCGAAGCTTGTCTGGACAAAACGGATGGA    200

BSNT_04362___    189 AAATGGGGACGTCATTACGGCCCAGCACTGGATGACCGGCAGAGAGCTGA    238
                     |||||||||.|||||.||.||.|||||||||.|||.||||||||||||||
BPUM_2639___y    201 AAATGGGGATGTCATCACTGCACAGCACTGGCTGAGCGGCAGAGAGCTGA    250

BSNT_04362___    239 AGCCTAAAGACATGAGCGGACGGCCCGTTGCTGAATTGCTTCGTAAAATA    288
                     ||||.||.|||||||..|..||.||.||.||.||...|||..|.|||||.
BPUM_2639___y    251 AGCCAAAGGACATGAATGACCGTCCTGTCGCAGAGCAGCTAAGAAAAATT    300

BSNT_04362___    289 CACACATCGAAAGCCTTGCTGGACATGCTGAAGAGACTTGGAAAAGAAC-    337
                     ||.||||||||||..|||||.||.||||||||..|| ||.||.|||.|| 
BPUM_2639___y    301 CATACATCGAAAGAATTGCTTGATATGCTGAAACGA-TTAGAGAAGCACT    349

BSNT_04362___    338 CGCTGAACCCGGGGGCTCTTTTGTCTCAGCTGAAGCAGGCTGTATTTGCT    387
                     |.||..||||.|...|..||.||...||..|.||.|||.|..||||....
BPUM_2639___y    350 CTCTAGACCCAGCATCCATTCTGAAACATTTAAAACAGTCCATATTAAAA    399

BSNT_04362___    388 GTGCAGCAATCTTCGCCGCTGAT----------TCAAGAAGGG--ATCAA    425
                     |.|||  |||         ||||          || |.|.|.|  |||.|
BPUM_2639___y    400 GAGCA--AAT---------TGATACGCGTGACGTC-ACACGTGCTATCCA    437

BSNT_04362___    426 GTATTTGGAAGAA-CACCTGCATGAAGTGCATTTCGGTGAGAAAGTCGTT    474
                     .||.||.| |||| ||..||.|.|.|||.||.||.|..||.||.|||||.
BPUM_2639___y    438 ATACTTAG-AGAAGCATGTGGAGGCAGTTCAATTTGAAGACAAGGTCGTG    486

BSNT_04362___    475 TGCCATTGTGATGTCAATCATAATAACTGGCTATTGTCTGAAGACAACCA    524
                     ||.||||||||..|||||||||||||.|||||..||.|.||.||.|||||
BPUM_2639___y    487 TGTCATTGTGACCTCAATCATAATAATTGGCTGCTGACAGATGAAAACCA    536

BSNT_04362___    525 GCTGTATTTAATTGACTGGGACGGCGCCATGATCGCTGATCCGGCGATGG    574
                     |||.||.|||||.||.|||||.||.||.|||||.|||||.||.||.||.|
BPUM_2639___y    537 GCTTTACTTAATCGATTGGGATGGGGCGATGATTGCTGACCCAGCCATTG    586

BSNT_04362___    575 ACCTCGGGC--CTTTGCTGTACCACTACGTCGAA-AAGCCAGCTTGGGAG    621
                     |.||.||.|  ||||  |.|||||.||.||.||| |||..|.| |||||.
BPUM_2639___y    587 ATCTTGGACCACTTT--TATACCATTATGTTGAAGAAGAAAAC-TGGGAA    633

BSNT_04362___    622 AGCTGGCTGAGCATGTACGG-----CATAGAGCTGACAGA-AAGCCTTCG    665
                     ||||||||....||||||||     |     ||||||||| ||       
BPUM_2639___y    634 AGCTGGCTCTCAATGTACGGTGCCCC-----GCTGACAGACAA-------    671

BSNT_04362___    666 GTTGCGA------ATGGCTTGGTATGTGTTATCTGAAACAATTACTTTCA    709
                     .||||||      ||||||||||||||..|..|||||||..|..|.||..
BPUM_2639___y    672 TTTGCGAAAACGCATGGCTTGGTATGTCCTCGCTGAAACCGTATCGTTTG    721

BSNT_04362___    710 TTGCCTGGCATAAAGCAAAAGGCAATGATAAGGAATTTCATGATGCAA--    757
                     |.|..|||||||||..||||||.|||||.||.|.|   ||    ||||  
BPUM_2639___y    722 TCGTGTGGCATAAAAGAAAAGGGAATGAAAAAGCA---CA----GCAAGA    764

BSNT_04362___    758 --TGGAA---GAGCT----GCATATCCTCATGAAACG---AATTGTTGAT    795
                       ||.||   |||||    |||    |||.|..|.||   ||...||.||
BPUM_2639___y    765 AGTGAAAGCGGAGCTGAGCGCA----CTCTTACAGCGGTTAAACATTCAT    810

BSNT_04362___    796 TAA    798
                     |||
BPUM_2639___y    811 TAA    813


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04362 and BPUM_2639

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
