Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04355 and BPUM_2636

See Amino acid alignment / Visit BSNT_04355 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:54
# Commandline: needle
#    -asequence dna-align/BSNT_04355___ytnP.1.24716.seq
#    -bsequence dna-align/BPUM_2636___ytnP.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04355___ytnP-BPUM_2636___ytnP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04355___ytnP-BPUM_2636___ytnP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04355___ytnP
# 2: BPUM_2636___ytnP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 883
# Identity:     595/883 (67.4%)
# Similarity:   595/883 (67.4%)
# Gaps:          80/883 ( 9.1%)
# Score: 1879.5
# 
#
#=======================================

BSNT_04355___      1 ATGGAAACAATGAAAATTGGAAACATCACGTTGACCTGGCTTG-----AC     45
                     |||||.|||||||||||.||     |.||.|.||.|||..|||     ||
BPUM_2636___y      1 ATGGAGACAATGAAAATAGG-----TGACATGGAACTGTTTTGGTTAAAC     45

BSNT_04355___     46 GGAGGCGTGACGCATATGGACGGAGGCGCCATGTTCGGCGTTGTGCCAAA     95
                     ||.||.|..||.|||||||||||.||.||.|||||.||.||.||||||||
BPUM_2636___y     46 GGGGGAGATACACATATGGACGGCGGTGCGATGTTTGGTGTAGTGCCAAA     95

BSNT_04355___     96 GCCGCTTTGGTCTAAAAAATATCCAGTCAATGAAAAAAACCAGATTGAAC    145
                     ||||||.|||||.||||||||.||.||.||.||....||.||.|||||||
BPUM_2636___y     96 GCCGCTATGGTCAAAAAAATACCCGGTGAACGATCGCAATCAAATTGAAC    145

BSNT_04355___    146 TAAGGACAGACCCTATTTTGATTCAAAAGGATGGGCTCAATATCATCGTT    195
                     |..||...|||||.||..|.||.|.|..|.||||.||..||.|..|.||.
BPUM_2636___y    146 TGCGGTGTGACCCGATCCTCATACGATGGAATGGTCTTCATTTTTTAGTG    195

BSNT_04355___    196 GACGCCGGAATTGGGTCCGGCAAGCTGACTGATAAACAAAAACGAAACTA    245
                     ||..||||.||.||.||.||.||||||||.||||||||||||||.||.||
BPUM_2636___y    196 GATTCCGGCATCGGATCAGGTAAGCTGACGGATAAACAAAAACGCAATTA    245

BSNT_04355___    246 TGGCGTGACACAAGAGTCGAATGTGAAACCCTCATTAGCTGCACTCGGAT    295
                     .|||||.|||.|||||.||||..||.||...|||.|.||.|||||.||..
BPUM_2636___y    246 CGGCGTAACAGAAGAGACGAAATTGGAAGAGTCACTTGCGGCACTTGGCC    295

BSNT_04355___    296 T--AACGGTTGCCGATATAGATGTGATCGCAATGACACACCTTCATTTTG    343
                     |  |||  ..||.|||||.|||....||..||||||.||.|||||.||.|
BPUM_2636___y    296 TGCAAC--CAGCAGATATTGATTACGTCTTAATGACGCATCTTCACTTCG    343

BSNT_04355___    344 ATCATGCATGCGGTTTAACGGAATATGAAGGTGAACGGCTCGTCTCTGTC    393
                     ||||||||.||||.|||||..||...|||||.|||..||||||.|||||.
BPUM_2636___y    344 ATCATGCAAGCGGATTAACAAAACTCGAAGGAGAAAAGCTCGTGTCTGTT    393

BSNT_04355___    394 TTTCCGAATGCAGTGATTTATACATCAGCT-----GTTGAATGGGACGAA    438
                     ||||||.|.|||...||     |||||..|     .|.||||||||.|||
BPUM_2636___y    394 TTTCCGCAAGCAAAAAT-----CATCACATCCAAAATCGAATGGGATGAA    438

BSNT_04355___    439 AT----GCGCCATCCGAATATCAGGTCGAAAAATACGTATTGGAAAGAAA    484
                     ||    |||    ||.||.|||.|.||.|.||||||.|||||||||||||
BPUM_2636___y    439 ATGAGGGCG----CCTAACATCCGCTCAAGAAATACATATTGGAAAGAAA    484

BSNT_04355___    485 ATTGGGAGGCTGTAGCTGGCCAAGT----CAAAACCTTTGAAGACACCTT    530
                     |.||||||.|..||||.|..|||||    |    |.||||||||.|.|  
BPUM_2636___y    485 ACTGGGAGCCGATAGCAGATCAAGTGGTGC----CGTTTGAAGAAAGC--    528

BSNT_04355___    531 AACGA--TCACAGAGGGTATTACA-ATGCATCACACCGGAGGCCATAGCG    577
                     |.|||  |.|.|||.||.||| || .|||||||.||.||.||.||||||.
BPUM_2636___y    529 ATCGAAGTAATAGAAGGCATT-CAGCTGCATCATACAGGTGGTCATAGCA    577

BSNT_04355___    578 ACGGACACAGTGTC------CTGATATGCGAGGATGCGGGTGAAACTGCC    621
                     |.||.||.||..||      ||.|.|.|      |..|||.|||||.||.
BPUM_2636___y    578 ATGGTCATAGCATCTTAACGCTCACAAG------TCAGGGCGAAACAGCG    621

BSNT_04355___    622 GTACATATGGCAGATCTGATGCCGACACATGCCCACCGCAATCCGCTATG    671
                     .|.|||.|.||.||..|.|||||.||.||.||.||....||.||..||||
BPUM_2636___y    622 ATTCATTTAGCTGACATCATGCCAACGCACGCTCATAAAAACCCATTATG    671

BSNT_04355___    672 GGTGCTGGCTTACGATGATTATCCGATGACCTCTA-TCCCGCAAAAGCAG    720
                     |||.||.|||||.||||||||.||.|||||.||.| |||.|| .|||||.
BPUM_2636___y    672 GGTCCTTGCTTATGATGATTACCCAATGACTTCAATTCCAGC-TAAGCAA    720

BSNT_04355___    721 AAATGGCAGGCGTTCGCAGCAGAAAAAGACGC-TGGTTTATTTTTTATCA    769
                     |||||||||||.||.||||.|||||||.|.|| ||||...|.||||||||
BPUM_2636___y    721 AAATGGCAGGCATTTGCAGAAGAAAAAAATGCGTGGTACTTGTTTTATCA    770

BSNT_04355___    770 TGATGCCGAA--TATCGCGCGCTTCAATGGGATGAGGACGGAAGC--ATC    815
                     ||||||  ||  ||.|||||..||.|.||||||||.|||||  ||  |||
BPUM_2636___y    771 TGATGC--AATTTACCGCGCTGTTAAGTGGGATGAAGACGG--GCAAATC    816

BSNT_04355___    816 AAAGATTCAGTC--AAGCGAATGA---------    837
                     |.|.||..|.||  |||.|||..|         
BPUM_2636___y    817 ACACATGAAATCAAAAGAGAAACAGGAAGATAA    849


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04355 and BPUM_2636

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
