Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04345 and BPUM_2629

See Amino acid alignment / Visit BSNT_04345 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:53
# Commandline: needle
#    -asequence dna-align/BSNT_04345___ytpQ.1.24716.seq
#    -bsequence dna-align/BPUM_2629___ytpQ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04345___ytpQ-BPUM_2629___ytpQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04345___ytpQ-BPUM_2629___ytpQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04345___ytpQ
# 2: BPUM_2629___ytpQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 847
# Identity:     596/847 (70.4%)
# Similarity:   596/847 (70.4%)
# Gaps:          71/847 ( 8.4%)
# Score: 1997.0
# 
#
#=======================================

BSNT_04345___      1 -TTG--AAAATGACCTCAAGGAAGCTGTCAGATATACTGAAGCAGCGCCT     47
                      |.|  ||||||||.|||||..||||..|..||..|||.|   |..|||.
BPUM_2629___y      1 ATGGCAAAAATGACATCAAGACAGCTTGCGAATGAACTCA---AAAGCCG     47

BSNT_04345___     48 TCAGCAC----GAGAA----TCGCTCCTTTCTGTTTGACAGAGAAAAAGA     89
                     ||.| ||    ||.||    ||.|.|    |.|||||||.||||||||||
BPUM_2629___y     48 TCTG-ACAAATGACAACTGGTCACAC----CAGTTTGACCGAGAAAAAGA     92

BSNT_04345___     90 CACCCTCCGTGTTGAGGATCAAACGACTAAA-----AAAGGGATTACACT    134
                     .||.||.|||.||||.||| ||||    |||     ||||||||.|||||
BPUM_2629___y     93 TACACTTCGTATTGAAGAT-AAAC----AAACAGGTAAAGGGATCACACT    137

BSNT_04345___    135 CGATTTGCCGCCGATTATTGCAAAATGGGAA-------CTGAAAAAAGAC    177
                     .||..|.||||||||.||||||||.||||||       ||||..|||   
BPUM_2629___y    138 AGAGCTCCCGCCGATCATTGCAAAGTGGGAAGTAAAGCCTGATGAAA---    184

BSNT_04345___    178 GAAGCCATT-GATGAGATCGTGTACTATGTCTCCGAA----GCGATGACG    222
                          |||| ||.||||||||.||.|||||    |||    |||.|.|..
BPUM_2629___y    185 -----CATTGGACGAGATCGTCTATTATGT----GAAAGAGGCGCTAAGT    225

BSNT_04345___    223 GCAATGGAAGG-GAAGGCTCAGGAAATGACCGGGAAAGAAACTCGCATTT    271
                     ||.|||.|||| ||| ||.|||.|.||..|.||.|||||||..|..||||
BPUM_2629___y    226 GCCATGAAAGGCGAA-GCGCAGCACATCTCAGGAAAAGAAAAGCAAATTT    274

BSNT_04345___    272 ATCCGGTCATCCGCTCGACTTCCTTCCCGGA--CAAGTCCAGCGAAGATA    319
                     ||||||||||.||.||.||||||||.||.||  ||  ||.||.||.|..|
BPUM_2629___y    275 ATCCGGTCATTCGATCTACTTCCTTTCCCGAGGCA--TCAAGTGATGGCA    322

BSNT_04345___    320 TCCCGCTCATTTATGACGATCATACCGCAGAGACAAGAATTTATTACGCG    369
                     ||||||||.|||.|||.||.|||||.||.||.||.|||||.||.||.||.
BPUM_2629___y    323 TCCCGCTCGTTTTTGATGAGCATACAGCTGAAACGAGAATCTACTATGCA    372

BSNT_04345___    370 CTAGATCTCGGGAAAACCTACCGTTTAATTGACCAGCGCATGCTTGAGAA    419
                     ||.||.||.||.|..||||||.|.||||||||..|....||||||.|.||
BPUM_2629___y    373 CTTGACCTTGGAAGCACCTACAGATTAATTGATGAAAAGATGCTTCAAAA    422

BSNT_04345___    420 AGAAAACTGGACAAAAGAGCGGATCAGAGAGACGGC-CGCATTTAATCTC    468
                     .|||||||||||||||||.||.|||||.||.||.|| .|| ||.|||.||
BPUM_2629___y    423 GGAAAACTGGACAAAAGAACGAATCAGGGAAACTGCTAGC-TTCAATGTC    471

BSNT_04345___    469 CGTTCCCTGCCGACGGTTGTCAAAGAGGATACGGTTGCCGGCAATTACTT    518
                     ||.||.||....||.||.||.|||..||||...||.||.|||||....||
BPUM_2629___y    472 CGCTCACTTGAAACTGTAGTGAAAATGGATGAAGTGGCAGGCAACCGGTT    521

BSNT_04345___    519 TTATTTCTTCAGGGCAAACGACGGATACGATGCAAGCCGGATTTTGAACG    568
                     ||||||||||.|.||.||.||||||||.|||||.|||.|..||||.||.|
BPUM_2629___y    522 TTATTTCTTCCGTGCGAATGACGGATATGATGCGAGCAGACTTTTAAATG    571

BSNT_04345___    569 AAGCGATCTTAAATGAGTATAAGCAGC-----ATGCAGAAGGGGAGCTGG    613
                     ||.||||||||.|  ||.|||.|| ||     ||  |||||||.||.|||
BPUM_2629___y    572 AATCGATCTTACA--AGAATACGC-GCAAAAAAT--AGAAGGGCAGATGG    616

BSNT_04345___    614 CGATCTCTGTTCCTCATCAGGACGTTTTGATTCTTGCTGACATCCGGAAT    663
                     |.|||||||||||.|||||.||.||.||.|||.||||.||..|..|.|||
BPUM_2629___y    617 CTATCTCTGTTCCCCATCAAGATGTATTCATTATTGCAGATGTTTGCAAT    666

BSNT_04345___    664 GAATCGGGGTATGATATTCTAGGACAAATGTCGATGAGCTTCTTTGCAGG    713
                     |||||.||.|||||||||.|||||||.|||||||||||||||||.||..|
BPUM_2629___y    667 GAATCAGGCTATGATATTTTAGGACAGATGTCGATGAGCTTCTTCGCCAG    716

BSNT_04345___    714 CGGCACCGTCCCGATTACCGCCCTTTCATTTTTGTACAATGAAGGAAAGC    763
                     ||||||.||.|||||||||||..|.||||||||.||..||||.||.||||
BPUM_2629___y    717 CGGCACGGTTCCGATTACCGCATTGTCATTTTTATATGATGAGGGTAAGC    766

BSNT_04345___    764 TGGAACCGGTGTTTATCCTGGCGAAAAGCCGTCCGAAAAAGGATTAG    810
                     |.||||||.|.|||||.||.||.||||||.|.||.|||.||.|.|||
BPUM_2629___y    767 TTGAACCGATCTTTATTCTTGCTAAAAGCAGACCAAAACAGCAGTAG    813


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04345 and BPUM_2629

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
