Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04344 and BPUM_2628
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:53
# Commandline: needle
# -asequence dna-align/BSNT_04344___ytpR.1.24716.seq
# -bsequence dna-align/BPUM_2628___ytpR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04344___ytpR-BPUM_2628___ytpR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04344___ytpR-BPUM_2628___ytpR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04344___ytpR
# 2: BPUM_2628___ytpR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 612
# Identity: 454/612 (74.2%)
# Similarity: 454/612 (74.2%)
# Gaps: 12/612 ( 2.0%)
# Score: 1633.0
#
#
#=======================================
BSNT_04344___ 1 ATGAACGCTTTTTATAATAAAGAAGGTGTGGGAGACACGCTCCTGATCTC 50
|||||||.||||||||||..|||||||||.||.|||||.|||||.||.||
BPUM_2628___y 1 ATGAACGTTTTTTATAATGCAGAAGGTGTAGGCGACACACTCCTTATTTC 50
BSNT_04344___ 51 TCTTCAAGATGTGACACGCGAACAATTAGGCTATGAAAAACAC----GGC 96
..|..||||||||||..|.|||.||.||||..||| |.|| ||.
BPUM_2628___y 51 ATTGAAAGATGTGACGAGAGAAGAAGTAGGTCATG----AGACGTTTGGA 96
BSNT_04344___ 97 GACGTCGTCAAAATTTTCAATAACGAAACAAAAGAAACAACGGGCTTCAA 146
||.|||||.|.|||.||||||.|.|||||||||||||||||.|||||.||
BPUM_2628___y 97 GATGTCGTAAGAATCTTCAATCAAGAAACAAAAGAAACAACAGGCTTTAA 146
BSNT_04344___ 147 CATTTTCAACGCGTCTTCTTACTTGACCATTGATGAAAACGGCCCTGTTG 196
.||.|||||.|||||..|||||.|||..|||||.||||||||..||||..
BPUM_2628___y 147 TATCTTCAATGCGTCCACTTACATGAAAATTGAAGAAAACGGATCTGTAC 196
BSNT_04344___ 197 CGCTCTCAGAAACATTCGTGCAAGATGTGAATGAGATTTTAAACAGAAAC 246
||||.||.||||||.|.||.||||||.|.||.||.|||||||||.|.|||
BPUM_2628___y 197 CGCTTTCTGAAACAATTGTTCAAGATATCAACGAAATTTTAAACCGCAAC 246
BSNT_04344___ 247 GGCGTTGAAGAAACATTAGTC-GTTGATTTATCTCCGAAGTTTGTTGTGG 295
||.||....|||||||| |.| ||.|||.||||.||.||.||||||||.|
BPUM_2628___y 247 GGTGTCAGTGAAACATT-GACTGTCGATCTATCACCAAAATTTGTTGTCG 295
BSNT_04344___ 296 GGTATGTAGAATCAAAAGAAAAACATCCGAATGCGGATAAATTAAGCGTA 345
|.||||||.|...|||||||||.|||||||||||.||||||.|||.|.|.
BPUM_2628___y 296 GTTATGTAAAGGAAAAAGAAAAGCATCCGAATGCAGATAAACTAAACATT 345
BSNT_04344___ 346 TGTAAAGTCAACGTAGGAGAAGAAACGCTTCAGATCGTCTGCGGCGCGCC 395
||..||||..|.||.||.||.|||||..|.||.|||||.|||||.||.||
BPUM_2628___y 346 TGCCAAGTGGATGTTGGCGATGAAACATTACAAATCGTGTGCGGTGCACC 395
BSNT_04344___ 396 TAACGTTGACCAAGGCCAAAAAGTTGTCGTTGCCAAAGTCGGTGCTGTGA 445
.||||||||.|||||.|||.|.||.||.|||||.||.||.||.||.||.|
BPUM_2628___y 396 AAACGTTGATCAAGGACAATACGTCGTGGTTGCGAAGGTTGGCGCAGTAA 445
BSNT_04344___ 446 TGCCTAGCGGACTTGTCATTAAGGATGCAGAGCTTCGCGGCGTTCCGTCA 495
|.||.|||||..|..||||.||.|||||.|||||..|.||.|||||.|||
BPUM_2628___y 446 TACCAAGCGGTTTAATCATCAAAGATGCTGAGCTAAGAGGTGTTCCATCA 495
BSNT_04344___ 496 AGCGGGATGATCTGCTCAGCGAAAGAGCTTGATTTGCCGGATGCCCCTGC 545
|||||.|||||.||.|||||.|||||.||.|||.|.||.||.||.|||||
BPUM_2628___y 496 AGCGGAATGATTTGTTCAGCAAAAGAACTAGATCTTCCAGACGCGCCTGC 545
BSNT_04344___ 546 TGAAAAAGGAATCCTTGTGTTAGAAGGAGACTATGAGGCGGGAGACGCAT 595
|||||||||.||.|||||..||||.|||..|.||.|.||.||.||..|.|
BPUM_2628___y 546 TGAAAAAGGGATTCTTGTTCTAGAGGGAAGCCATCAAGCTGGCGAACCCT 595
BSNT_04344___ 596 TTC-AGTTTTAG 606
||| ||.||.|
BPUM_2628___y 596 TTCAAGCTTAA- 606
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