Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04344 and BPUM_2628

See Amino acid alignment / Visit BSNT_04344 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:53
# Commandline: needle
#    -asequence dna-align/BSNT_04344___ytpR.1.24716.seq
#    -bsequence dna-align/BPUM_2628___ytpR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04344___ytpR-BPUM_2628___ytpR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04344___ytpR-BPUM_2628___ytpR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04344___ytpR
# 2: BPUM_2628___ytpR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 612
# Identity:     454/612 (74.2%)
# Similarity:   454/612 (74.2%)
# Gaps:          12/612 ( 2.0%)
# Score: 1633.0
# 
#
#=======================================

BSNT_04344___      1 ATGAACGCTTTTTATAATAAAGAAGGTGTGGGAGACACGCTCCTGATCTC     50
                     |||||||.||||||||||..|||||||||.||.|||||.|||||.||.||
BPUM_2628___y      1 ATGAACGTTTTTTATAATGCAGAAGGTGTAGGCGACACACTCCTTATTTC     50

BSNT_04344___     51 TCTTCAAGATGTGACACGCGAACAATTAGGCTATGAAAAACAC----GGC     96
                     ..|..||||||||||..|.|||.||.||||..|||    |.||    ||.
BPUM_2628___y     51 ATTGAAAGATGTGACGAGAGAAGAAGTAGGTCATG----AGACGTTTGGA     96

BSNT_04344___     97 GACGTCGTCAAAATTTTCAATAACGAAACAAAAGAAACAACGGGCTTCAA    146
                     ||.|||||.|.|||.||||||.|.|||||||||||||||||.|||||.||
BPUM_2628___y     97 GATGTCGTAAGAATCTTCAATCAAGAAACAAAAGAAACAACAGGCTTTAA    146

BSNT_04344___    147 CATTTTCAACGCGTCTTCTTACTTGACCATTGATGAAAACGGCCCTGTTG    196
                     .||.|||||.|||||..|||||.|||..|||||.||||||||..||||..
BPUM_2628___y    147 TATCTTCAATGCGTCCACTTACATGAAAATTGAAGAAAACGGATCTGTAC    196

BSNT_04344___    197 CGCTCTCAGAAACATTCGTGCAAGATGTGAATGAGATTTTAAACAGAAAC    246
                     ||||.||.||||||.|.||.||||||.|.||.||.|||||||||.|.|||
BPUM_2628___y    197 CGCTTTCTGAAACAATTGTTCAAGATATCAACGAAATTTTAAACCGCAAC    246

BSNT_04344___    247 GGCGTTGAAGAAACATTAGTC-GTTGATTTATCTCCGAAGTTTGTTGTGG    295
                     ||.||....|||||||| |.| ||.|||.||||.||.||.||||||||.|
BPUM_2628___y    247 GGTGTCAGTGAAACATT-GACTGTCGATCTATCACCAAAATTTGTTGTCG    295

BSNT_04344___    296 GGTATGTAGAATCAAAAGAAAAACATCCGAATGCGGATAAATTAAGCGTA    345
                     |.||||||.|...|||||||||.|||||||||||.||||||.|||.|.|.
BPUM_2628___y    296 GTTATGTAAAGGAAAAAGAAAAGCATCCGAATGCAGATAAACTAAACATT    345

BSNT_04344___    346 TGTAAAGTCAACGTAGGAGAAGAAACGCTTCAGATCGTCTGCGGCGCGCC    395
                     ||..||||..|.||.||.||.|||||..|.||.|||||.|||||.||.||
BPUM_2628___y    346 TGCCAAGTGGATGTTGGCGATGAAACATTACAAATCGTGTGCGGTGCACC    395

BSNT_04344___    396 TAACGTTGACCAAGGCCAAAAAGTTGTCGTTGCCAAAGTCGGTGCTGTGA    445
                     .||||||||.|||||.|||.|.||.||.|||||.||.||.||.||.||.|
BPUM_2628___y    396 AAACGTTGATCAAGGACAATACGTCGTGGTTGCGAAGGTTGGCGCAGTAA    445

BSNT_04344___    446 TGCCTAGCGGACTTGTCATTAAGGATGCAGAGCTTCGCGGCGTTCCGTCA    495
                     |.||.|||||..|..||||.||.|||||.|||||..|.||.|||||.|||
BPUM_2628___y    446 TACCAAGCGGTTTAATCATCAAAGATGCTGAGCTAAGAGGTGTTCCATCA    495

BSNT_04344___    496 AGCGGGATGATCTGCTCAGCGAAAGAGCTTGATTTGCCGGATGCCCCTGC    545
                     |||||.|||||.||.|||||.|||||.||.|||.|.||.||.||.|||||
BPUM_2628___y    496 AGCGGAATGATTTGTTCAGCAAAAGAACTAGATCTTCCAGACGCGCCTGC    545

BSNT_04344___    546 TGAAAAAGGAATCCTTGTGTTAGAAGGAGACTATGAGGCGGGAGACGCAT    595
                     |||||||||.||.|||||..||||.|||..|.||.|.||.||.||..|.|
BPUM_2628___y    546 TGAAAAAGGGATTCTTGTTCTAGAGGGAAGCCATCAAGCTGGCGAACCCT    595

BSNT_04344___    596 TTC-AGTTTTAG    606
                     ||| ||.||.| 
BPUM_2628___y    596 TTCAAGCTTAA-    606


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