Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04335 and BPUM_2624
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:52
# Commandline: needle
# -asequence dna-align/BSNT_04335___ytxH.1.24716.seq
# -bsequence dna-align/BPUM_2624___ytxH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04335___ytxH-BPUM_2624___ytxH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04335___ytxH-BPUM_2624___ytxH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04335___ytxH
# 2: BPUM_2624___ytxH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 506
# Identity: 310/506 (61.3%)
# Similarity: 310/506 (61.3%)
# Gaps: 82/506 (16.2%)
# Score: 915.5
#
#
#=======================================
BSNT_04335___ 1 ATGATGAGCAAAGATGGAATTAATAGTAAAGATTTTTTAATCGGAACTTT 50
|||||||||||.|||||.|||||||||||.|||||.||||||||..|
BPUM_2624___y 1 ---ATGAGCAAAGACGGAATCAATAGTAAAGACTTTTTGATCGGAACACT 47
BSNT_04335___ 51 AATCGGGGGAATCATCGGTGCCACTACAGCTCTTTTTCTAGCGCCTAAAT 100
.||.||.|||||..|.|||||.||.||||||.|.|||.||||.||.||.|
BPUM_2624___y 48 TATTGGTGGAATTGTGGGTGCAACAACAGCTTTATTTTTAGCACCGAAGT 97
BSNT_04335___ 101 CAGGCAAAGAACTTCGCGACGATCTCGGCAGCCAGGCTGTTGCTTTACGG 150
||||.|||||.||||||||.|||.|...||.|||.||...||.||||...
BPUM_2624___y 98 CAGGGAAAGAGCTTCGCGATGATTTGAACACCCAAGCGAATGTTTTAAAA 147
BSNT_04335___ 151 GACAAAACTGATAAAATGACGGCAGATGCGAAGGAAAAAGGCACGCAATA 200
||.|||||.|||..|.|.||..|||||||.||.||||.||||||..||||
BPUM_2624___y 148 GAAAAAACAGATCGACTCACAACAGATGCAAAAGAAAGAGGCACTGAATA 197
BSNT_04335___ 201 TGTCAGCATCGCAAAAGACAAAACTTCCAACATCACACAGCTTGTAGCGG 250
|||.|..||.||.|||||.|||||.||..|..|..|.||.||.||.||.|
BPUM_2624___y 198 TGTGACGATTGCGAAAGATAAAACGTCTGAATTGTCTCAACTAGTGGCAG 247
BSNT_04335___ 251 ATCAGTCTGGGCAGATCATGAACAAGGTGAAGGATTTAAGAGACCGTTC- 299
|.||.||....||.||..|..||||.|||||.||..|||.|||.|||.|
BPUM_2624___y 248 AACAATCAAACCAAATTTTAGACAAAGTGAAAGACATAAAAGAACGTGCA 297
BSNT_04335___ 300 -----TAAATCTGAT------AAAACGGATTCATCGACTGC--------- 329
.|||.||.|| ||||..||..||..||.|||
BPUM_2624___y 298 GCTGGAAAAGCTAATCATGTGAAAAATGAAGCAGAGAATGCGGCAGCTGA 347
BSNT_04335___ 330 ---AATGCAAGATATGAGGGAAGAAGC-GATGCAGGCGGCTGATGAAACA 375
| ||| ||.||||.|.| ||||.| ||.||||||.||
BPUM_2624___y 348 CCTA--GCA-------AGTGAAGCATCAGATGTA----GCAGATGAAGCA 384
BSNT_04335___ 376 AAAGATCAAGTCCTCCAGA--CGAAA---------GAAGATG---TAAAA 411
||||..|.|| |.|.||| ||||| ||||||| |.|||
BPUM_2624___y 385 AAAGTACGAG--CACAAGAAGCGAAATCTGAGATTGAAGATGGCATTAAA 432
BSNT_04335___ 412 GACGAACTGAAAGATGCACAAAAACAGGCTGAGCAGTTGAATCG-CTGA- 459
||.| |.|||| |||| ||.||...||||| ||.|
BPUM_2624___y 433 GATG---TTAAAG-------AAAA-------AGTAGAACAATCGACTAAA 465
BSNT_04335___ 459 ------ 459
BPUM_2624___y 466 GGCTAA 471
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