Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04331 and BPUM_2620

See Amino acid alignment / Visit BSNT_04331 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:52
# Commandline: needle
#    -asequence dna-align/BSNT_04331___ccpA.1.24716.seq
#    -bsequence dna-align/BPUM_2620___ccpA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04331___ccpA-BPUM_2620___ccpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04331___ccpA-BPUM_2620___ccpA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04331___ccpA
# 2: BPUM_2620___ccpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1023
# Identity:     787/1023 (76.9%)
# Similarity:   787/1023 (76.9%)
# Gaps:          39/1023 ( 3.8%)
# Score: 2956.5
# 
#
#=======================================

BSNT_04331___      1 ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCAT     50
                     .|||..|||.||||.||.||.||||||||.||||||||.||||||||.||
BPUM_2620___c      1 GTGAATAATGTTACAATATATGATGTAGCAAGAGAAGCAAATGTAAGTAT     50

BSNT_04331___     51 GGCAACCGTTTCCCGTGTCGTGAACGGCAACCCGAATGTAAAACCGACAA    100
                     ||||||.||.||.||.||.|||||.||.||.||||||||||||||.||||
BPUM_2620___c     51 GGCAACGGTATCACGCGTAGTGAATGGGAATCCGAATGTAAAACCAACAA    100

BSNT_04331___    101 CGAGAAAAAAAGT-CTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAA    149
                     |.||||||||.|| ||| |||||.|||||.|||||.||.|||||.||.||
BPUM_2620___c    101 CAAGAAAAAAGGTACTT-GAAGCGATTGATCGTCTTGGCTACCGCCCGAA    149

BSNT_04331___    150 CGCGGTGGCAAGAGGGCTGGCAAGTAAAAAAACAACAACTGTAGGTGTCA    199
                     .||.||||||.||||.||.||||||||||||||||||||.||.||.||||
BPUM_2620___c    150 TGCTGTGGCACGAGGCCTTGCAAGTAAAAAAACAACAACGGTTGGCGTCA    199

BSNT_04331___    200 TCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCGCGCGGAATT    249
                     ||||.||.|||||.||.||.||.|||||||||||||||||.|||||||||
BPUM_2620___c    200 TCATCCCTGATATTTCTAGTATCTTCTATTCAGAGCTTGCTCGCGGAATT    249

BSNT_04331___    250 GAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGA    299
                     |||||||||||.|||||||||||.|||||.||.||||||||||||||.||
BPUM_2620___c    250 GAAGATATCGCCACAATGTATAAGTACAACATCATTTTGAGCAACTCAGA    299

BSNT_04331___    300 CCAAAACATGGAGAAAGAGCTGCACTTGTTAAACACAATGCTCGGCAAAC    349
                     .|||||.|..||.||||||||.||..|.|||||.||||||||.||.||||
BPUM_2620___c    300 TCAAAATACCGATAAAGAGCTTCATCTATTAAATACAATGCTAGGTAAAC    349

BSNT_04331___    350 AAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTG    399
                     ||||.||.||.||.||.||||||||.||||||||.||.||.|.||.|||.
BPUM_2620___c    350 AAGTAGATGGGATTGTCTTTATGGGTGGAAACATCACAGATGTGCTTGTT    399

BSNT_04331___    400 GCGGAATTTAAGCGTTCTCCAGTGCCGATTGTACTTGCCGCTTCTGTAGA    449
                     |..|||||||||||.|||||.|||||.|||||.|||||.||.|||||.||
BPUM_2620___c    400 GAAGAATTTAAGCGCTCTCCTGTGCCAATTGTTCTTGCAGCCTCTGTTGA    449

BSNT_04331___    450 AGAGCAGGAGGAAACACCGTCAGTCGCTATCGATTACGAACAGGCGATTT    499
                     ||||||||...|||||||.||.|||..||||.|.|||||.||.|||||||
BPUM_2620___c    450 AGAGCAGGCTCAAACACCATCTGTCAATATCAACTACGAGCAAGCGATTT    499

BSNT_04331___    500 ATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGAC--ATCGCGT    547
                     |||||.||||..|||||||.|||||.|||||||||| || |  ||.||.|
BPUM_2620___c    500 ATGATTCCGTTCAGCTTTTAGTTGAAAAAGGACATA-AG-CGAATTGCCT    547

BSNT_04331___    548 TCGTTTCCGGACCAATGGCAGAACCGATCAACCGTTCGAAAAAACTCCAA    597
                     ||||.||.||.||||||.||||||||||.|||..|..||.|||.||...|
BPUM_2620___c    548 TCGTATCTGGCCCAATGTCAGAACCGATTAACTCTATGAGAAAGCTAGCA    597

BSNT_04331___    598 GGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATGAACAAT-    646
                     ||.||.||.||||||||||||||||||..|.|..|.|||.|||    || 
BPUM_2620___c    598 GGTTATAAGCGTGCGCTTGAAGAAGCGGGCATCGCATTTGATG----ATG    643

BSNT_04331___    647 ---TTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCAC-T    692
                        |.||.||||||||.||||||.|.||||||||.|||.|.|||.|.| |
BPUM_2620___c    644 TGCTCGTCGCTGAAGGCGATTACTCGTATGATTCTGGAATTGAATCTCTT    693

BSNT_04331___    693 GCAGCATCTGA--TGAGC---CTGGATAAAAAACCGACAGCCATTCTTTC    737
                     || .||||| |  |||||   |||    |.||.||||||||..||.||.|
BPUM_2620___c    694 GC-TCATCT-ACTTGAGCAGTCTG----ACAAGCCGACAGCTGTTATTGC    737

BSNT_04331___    738 TGCAACTGATGAAATGGCACTCGGCATTATCCATGCCGCTCAGGATCAG-    786
                     .||.||.|||||||||||..|.||..|.||.||||..||.||.||| || 
BPUM_2620___c    738 GGCTACAGATGAAATGGCGTTAGGTGTCATTCATGGAGCACAAGAT-AGA    786

BSNT_04331___    787 GGCTTATCCATTCCGGAGGATCTCGACATTATCGGTTTTGATAATACAAG    836
                     |||.||||.|||||.||||||.|.||..|.||.||.||||||||.||.||
BPUM_2620___c    787 GGCGTATCAATTCCTGAGGATTTAGAAGTGATTGGCTTTGATAACACGAG    836

BSNT_04331___    837 ATTAAGCCTCATGGTTCGTCCTCAGCTTTCAACAGTTGTTCAGCCGACAT    886
                     |.|....||||||||.||||||||.||..|||||||||||||||||||||
BPUM_2620___c    837 ACTTTCTCTCATGGTGCGTCCTCAACTGACAACAGTTGTTCAGCCGACAT    886

BSNT_04331___    887 ATGATATCGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAA    936
                     |||||||.||.||.||.||.||||||||||||||.|||||.|||||.|||
BPUM_2620___c    887 ATGATATTGGTGCTGTCGCAATGAGACTGCTGACAAAGCTGATGAACAAA    936

BSNT_04331___    937 GAGCCGGTTGAAGAGCATATCGTCGAACTGCCGCACCGTATAGAGCTTAG    986
                     ||.|..||.||.||.||.||.||.||.||.||.|||||.||.||    ||
BPUM_2620___c    937 GAACAAGTGGATGACCAAATTGTGGAGCTTCCACACCGAATTGA----AG    982

BSNT_04331___    987 AAAG----TCAACCAAGTCATAA   1005
                     ||||    |||||.||   ||||
BPUM_2620___c    983 AAAGACAATCAACAAA---ATAA   1002


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