Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04331 and BPUM_2620
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:52
# Commandline: needle
# -asequence dna-align/BSNT_04331___ccpA.1.24716.seq
# -bsequence dna-align/BPUM_2620___ccpA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04331___ccpA-BPUM_2620___ccpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04331___ccpA-BPUM_2620___ccpA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04331___ccpA
# 2: BPUM_2620___ccpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1023
# Identity: 787/1023 (76.9%)
# Similarity: 787/1023 (76.9%)
# Gaps: 39/1023 ( 3.8%)
# Score: 2956.5
#
#
#=======================================
BSNT_04331___ 1 ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCAT 50
.|||..|||.||||.||.||.||||||||.||||||||.||||||||.||
BPUM_2620___c 1 GTGAATAATGTTACAATATATGATGTAGCAAGAGAAGCAAATGTAAGTAT 50
BSNT_04331___ 51 GGCAACCGTTTCCCGTGTCGTGAACGGCAACCCGAATGTAAAACCGACAA 100
||||||.||.||.||.||.|||||.||.||.||||||||||||||.||||
BPUM_2620___c 51 GGCAACGGTATCACGCGTAGTGAATGGGAATCCGAATGTAAAACCAACAA 100
BSNT_04331___ 101 CGAGAAAAAAAGT-CTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAA 149
|.||||||||.|| ||| |||||.|||||.|||||.||.|||||.||.||
BPUM_2620___c 101 CAAGAAAAAAGGTACTT-GAAGCGATTGATCGTCTTGGCTACCGCCCGAA 149
BSNT_04331___ 150 CGCGGTGGCAAGAGGGCTGGCAAGTAAAAAAACAACAACTGTAGGTGTCA 199
.||.||||||.||||.||.||||||||||||||||||||.||.||.||||
BPUM_2620___c 150 TGCTGTGGCACGAGGCCTTGCAAGTAAAAAAACAACAACGGTTGGCGTCA 199
BSNT_04331___ 200 TCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCGCGCGGAATT 249
||||.||.|||||.||.||.||.|||||||||||||||||.|||||||||
BPUM_2620___c 200 TCATCCCTGATATTTCTAGTATCTTCTATTCAGAGCTTGCTCGCGGAATT 249
BSNT_04331___ 250 GAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGA 299
|||||||||||.|||||||||||.|||||.||.||||||||||||||.||
BPUM_2620___c 250 GAAGATATCGCCACAATGTATAAGTACAACATCATTTTGAGCAACTCAGA 299
BSNT_04331___ 300 CCAAAACATGGAGAAAGAGCTGCACTTGTTAAACACAATGCTCGGCAAAC 349
.|||||.|..||.||||||||.||..|.|||||.||||||||.||.||||
BPUM_2620___c 300 TCAAAATACCGATAAAGAGCTTCATCTATTAAATACAATGCTAGGTAAAC 349
BSNT_04331___ 350 AAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTG 399
||||.||.||.||.||.||||||||.||||||||.||.||.|.||.|||.
BPUM_2620___c 350 AAGTAGATGGGATTGTCTTTATGGGTGGAAACATCACAGATGTGCTTGTT 399
BSNT_04331___ 400 GCGGAATTTAAGCGTTCTCCAGTGCCGATTGTACTTGCCGCTTCTGTAGA 449
|..|||||||||||.|||||.|||||.|||||.|||||.||.|||||.||
BPUM_2620___c 400 GAAGAATTTAAGCGCTCTCCTGTGCCAATTGTTCTTGCAGCCTCTGTTGA 449
BSNT_04331___ 450 AGAGCAGGAGGAAACACCGTCAGTCGCTATCGATTACGAACAGGCGATTT 499
||||||||...|||||||.||.|||..||||.|.|||||.||.|||||||
BPUM_2620___c 450 AGAGCAGGCTCAAACACCATCTGTCAATATCAACTACGAGCAAGCGATTT 499
BSNT_04331___ 500 ATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGAC--ATCGCGT 547
|||||.||||..|||||||.|||||.|||||||||| || | ||.||.|
BPUM_2620___c 500 ATGATTCCGTTCAGCTTTTAGTTGAAAAAGGACATA-AG-CGAATTGCCT 547
BSNT_04331___ 548 TCGTTTCCGGACCAATGGCAGAACCGATCAACCGTTCGAAAAAACTCCAA 597
||||.||.||.||||||.||||||||||.|||..|..||.|||.||...|
BPUM_2620___c 548 TCGTATCTGGCCCAATGTCAGAACCGATTAACTCTATGAGAAAGCTAGCA 597
BSNT_04331___ 598 GGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATGAACAAT- 646
||.||.||.||||||||||||||||||..|.|..|.|||.||| ||
BPUM_2620___c 598 GGTTATAAGCGTGCGCTTGAAGAAGCGGGCATCGCATTTGATG----ATG 643
BSNT_04331___ 647 ---TTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCAC-T 692
|.||.||||||||.||||||.|.||||||||.|||.|.|||.|.| |
BPUM_2620___c 644 TGCTCGTCGCTGAAGGCGATTACTCGTATGATTCTGGAATTGAATCTCTT 693
BSNT_04331___ 693 GCAGCATCTGA--TGAGC---CTGGATAAAAAACCGACAGCCATTCTTTC 737
|| .||||| | ||||| ||| |.||.||||||||..||.||.|
BPUM_2620___c 694 GC-TCATCT-ACTTGAGCAGTCTG----ACAAGCCGACAGCTGTTATTGC 737
BSNT_04331___ 738 TGCAACTGATGAAATGGCACTCGGCATTATCCATGCCGCTCAGGATCAG- 786
.||.||.|||||||||||..|.||..|.||.||||..||.||.||| ||
BPUM_2620___c 738 GGCTACAGATGAAATGGCGTTAGGTGTCATTCATGGAGCACAAGAT-AGA 786
BSNT_04331___ 787 GGCTTATCCATTCCGGAGGATCTCGACATTATCGGTTTTGATAATACAAG 836
|||.||||.|||||.||||||.|.||..|.||.||.||||||||.||.||
BPUM_2620___c 787 GGCGTATCAATTCCTGAGGATTTAGAAGTGATTGGCTTTGATAACACGAG 836
BSNT_04331___ 837 ATTAAGCCTCATGGTTCGTCCTCAGCTTTCAACAGTTGTTCAGCCGACAT 886
|.|....||||||||.||||||||.||..|||||||||||||||||||||
BPUM_2620___c 837 ACTTTCTCTCATGGTGCGTCCTCAACTGACAACAGTTGTTCAGCCGACAT 886
BSNT_04331___ 887 ATGATATCGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAA 936
|||||||.||.||.||.||.||||||||||||||.|||||.|||||.|||
BPUM_2620___c 887 ATGATATTGGTGCTGTCGCAATGAGACTGCTGACAAAGCTGATGAACAAA 936
BSNT_04331___ 937 GAGCCGGTTGAAGAGCATATCGTCGAACTGCCGCACCGTATAGAGCTTAG 986
||.|..||.||.||.||.||.||.||.||.||.|||||.||.|| ||
BPUM_2620___c 937 GAACAAGTGGATGACCAAATTGTGGAGCTTCCACACCGAATTGA----AG 982
BSNT_04331___ 987 AAAG----TCAACCAAGTCATAA 1005
|||| |||||.|| ||||
BPUM_2620___c 983 AAAGACAATCAACAAA---ATAA 1002
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