Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04313 and BPUM_2607
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:51
# Commandline: needle
# -asequence dna-align/BSNT_04313___hisJ.1.24716.seq
# -bsequence dna-align/BPUM_2607___hisK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04313___hisJ-BPUM_2607___hisK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04313___hisJ-BPUM_2607___hisK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04313___hisJ
# 2: BPUM_2607___hisK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 898
# Identity: 551/898 (61.4%)
# Similarity: 551/898 (61.4%)
# Gaps: 173/898 (19.3%)
# Score: 1607.5
#
#
#=======================================
BSNT_04313___ 1 ATGCAAAAGCGAGACGGACATATTCACACACCATTTTGCCCTCACGG--C 48
||||..||||.|||.|.||||.|.||.|||||.||||||||.||||| |
BPUM_2607___h 1 ATGCTGAAGCAAGATGCACATCTACATACACCGTTTTGCCCGCACGGTAC 50
BSNT_04313___ 49 TCCAATGA-------CACACTCAGACAATATGCAGAAGAAGCCTTAAAAA 91
.|| ||| ||..|| |||...|||.|||||.|.||||
BPUM_2607___h 51 GCC--TGATTCTTTTCATTCT-------TATATTGAAAAAGCCATCAAAA 91
BSNT_04313___ 92 AAGGGTTCGAATCGATTACTTTTACCGAACACGCCCCATTGCCGCCCTCT 141
|.||.||.||.||.||.||.|||||.||.||.|||||..||||.||.||.
BPUM_2607___h 92 AGGGATTTGATTCCATAACCTTTACTGAGCATGCCCCTCTGCCTCCATCG 141
BSNT_04313___ 142 TTTACC--GATCCCACGCC-GCTGAAAGACAGCGCGATGGCGCAAGCTTC 188
|| || |||||.||.|| || |.|.||.||.||.||| |||||||
BPUM_2607___h 142 TT--CCATGATCCAACACCAGC-GCAGGATAGTGCCATG----AAGCTTC 184
BSNT_04313___ 189 -----TTTGGAACGCTATATTCATGAAATTTCCGGAT----TAAAAAAAG 229
.|||.|.|| |||| |.|.|||||| |||| |.|||.|.|
BPUM_2607___h 185 AAGAACTTGAATCG-TATA-TAACGAAATT---GGATCAGCTGAAACAGG 229
BSNT_04313___ 230 AATATCGCGGACAGCT--TAGCATACGGACAGGGCTTGAAGTCGATTATA 277
||||....|||||..| ||| ||...||.||||||||.||.||.||||
BPUM_2607___h 230 AATACAAAGGACAATTAATAG--TAAAAACTGGGCTTGAGGTTGACTATA 277
BSNT_04313___ 278 TCGCTGAATTTGAAGACGA---AATTACATTATTCCTAGACACATACGGG 324
||...||.|.||||||.|| ||.|.|.||.| |||||...||.||.
BPUM_2607___h 278 TCAAAGAGTATGAAGAGGAAACAAGTGCCTTTT---TAGACTGCTATGGC 324
BSNT_04313___ 325 CCATATTTAGATGACAGCATCTTATCCGTTCATTTTTTGCGCACAGACTC 374
|||.|..||||.||.|||||.||.||.|||||.|| ||
BPUM_2607___h 325 CCAGAACTAGACGATAGCATTTTGTCTGTTCACTT-------------TC 361
BSNT_04313___ 375 TTCC-------------TATCTATGCCTTGATTATGACGAGCATACCTTC 411
|||| |||.|.||||||||||.||||||||||.|||||
BPUM_2607___h 362 TTCCTGCTGGCGATGATTATATTTGCCTTGATTTTGACGAGCATGCCTTC 411
BSNT_04313___ 412 AAAGAGCTGATTTCAGCCTGC---GGAAGCATTGAAGCGGTATATGAA-- 456
.|..||||.| |.||||| | ||.|||||.|||..|||.|||.||
BPUM_2607___h 412 CAGCAGCTAA--TAAGCCT-CTATGGCAGCATCGAACAGGTCTATCAAAG 458
BSNT_04313___ 457 -CAATATTACCGGAGTATCTATTCTTCCATTGTAGCATCTCTCGG-CGTT 504
.|.|||.||| ..||..|||||||.|||.||.|||||.|.|| || .
BPUM_2607___h 459 CTACTATGACC---AAATTCATTCTTCTATTCTATCATCTTTAGGTCG-C 504
BSNT_04313___ 505 TATAAGCCAAAAAGAGTCGGTCACATCACACTCGTCCAAAAATTCATCAA 554
|||||||||||.|||.|||||||.|||||.||.||.||.|||||||...|
BPUM_2607___h 505 TATAAGCCAAATAGAATCGGTCATATCACCCTTGTGCAGAAATTCAAACA 554
BSNT_04313___ 555 GCTGTTTCCAT--------ACA---GCA---TGTCAGAACATATTCGCGG 590
|||.||.|||| ||| ||| |||||.||
BPUM_2607___h 555 GCTTTTCCCATTTGAGATGACACCTGCACTTTGTCAAAA----------- 593
BSNT_04313___ 591 CCTCGTTTCCCTGTGCCTGAATGCCATTGAAGAAAACGG------AATGG 634
.|||.||||.||.| |||||| |||||| ||.|.
BPUM_2607___h 594 ---GGTTACCCTTTGTC---------TTGAAG-AAACGGCAAAAAAAGGC 630
BSNT_04313___ 635 AGCTC----GACTTCAATACTTCCGG-CTTAAGAAAAACTTACGCTGGCG 679
|..|| ||.||.|||||.||.|| ||| .|.|||||.||.||..|..
BPUM_2607___h 631 ATGTCTTTAGATTTTAATACATCAGGTCTT-CGTAAAACATATGCCAGAA 679
BSNT_04313___ 680 GTATTTATATCGAGGATTGGATGCTGAATGAAGCGAAGCAAAAGAAGATC 729
||||.|||.|.||..|.||||||.|..||...||.||.||.||.||.||.
BPUM_2607___h 680 GTATCTATTTAGATCAATGGATGATTGATCTTGCAAAACAGAAAAAAATT 729
BSNT_04313___ 730 CCGCTTGTGTTTGGGTCAGATGCCCATCAAGCGGGAGATGTCGGATATGC 779
||||||.|.||||||||.||||||||||||||||.||||.||||||||||
BPUM_2607___h 730 CCGCTTATATTTGGGTCTGATGCCCATCAAGCGGAAGATCTCGGATATGC 779
BSNT_04313___ 780 GTATG-----------------AGGCGTTTT---TGGAACGGTGCTAG 807
.|||| |.|.||||| ||.
BPUM_2607___h 780 TTATGATCAATTCGAAGACATCATGAGTTTTAAATGA----------- 816
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