Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01852 and BPUM_2599
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:22
# Commandline: needle
# -asequence dna-align/BSNT_01852___yisU.1.24716.seq
# -bsequence dna-align/BPUM_2599___yisU.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01852___yisU-BPUM_2599___yisU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01852___yisU-BPUM_2599___yisU.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01852___yisU
# 2: BPUM_2599___yisU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 691
# Identity: 394/691 (57.0%)
# Similarity: 394/691 (57.0%)
# Gaps: 155/691 (22.4%)
# Score: 1056.0
#
#
#=======================================
BSNT_01852___ 1 ------ATGAATGCAATCATTCACGGAATTGTGCTCGCGTTTGGCTTAAT 44
|| |||.|||.||||.|||||||||||.||.||||||.|.||
BPUM_2599___y 1 GTGTTCAT---TGCCATCGTTCATGGAATTGTGCTTGCCTTTGGCCTCAT 47
BSNT_01852___ 45 TTTGCCGCTGGGAGTGCAGAATGTGTTTATTTTTCAGCAAGG-------- 86
|||.||..||||||..||.|||||.|||.|.|||||||||||
BPUM_2599___y 48 TTTACCATTGGGAGCACAAAATGTATTTGTATTTCAGCAAGGAGCACTTC 97
BSNT_01852___ 87 ---CGCGTGGCAAAAGCATATTTGGCGGGCTCTCCCAGCTGTCATCAGTG 133
|||| |..|||| |.||||.|.||.|..||.||||.||
BPUM_2599___y 98 AGCCGCG-------ATTATAT----CAGGCTTTACCTGTCGTTATCACTG 136
BSNT_01852___ 134 CTTCAGTCTGCGATACCCTGTTAATCGTATTAGCCGTTGCGGGCGTATCT 183
||.|..|.||.||.||.||.|||||.|..|||||.||....||.||.|||
BPUM_2599___y 137 CTGCTCTTTGTGACACACTTTTAATTGCGTTAGCTGTCATTGGGGTTTCT 186
BSNT_01852___ 184 GTCATTGTG---------CAGGAGCTGC----CTGTGTTTGAGACAGTCA 220
||..|.||| |.|..|.||| .|||.||| || .|||
BPUM_2599___y 187 GTTGTGGTGTTCACCATTCCGATGTTGCAAATGTGTCTTT---AC-CTCA 232
BSNT_01852___ 221 TGATGGCCGGCGGATTTTTATTTTTGCTTTATATGGGCTGG---GTGACT 267
| .|||||||..|||||..|.||||||||.||| |||
BPUM_2599___y 233 T---------TGGATTTTGTTTTTTAGTATATATGGGATGGTCCGTG--- 270
BSNT_01852___ 268 TGGAACAGCCGTCCGAACACAAGCCAA--------AACGAGAAACATACG 309
||||||| |.|||.|| .||| ||.|||||.||....
BPUM_2599___y 271 TGGAACA------CAAACTCA--TCAACAGGTGCTAAAGAGAAGCAGGAA 312
BSNT_01852___ 310 TTCACACC----AAAAAAGCAAGCTGCGTTTGCGGCCG--CTGTTTCTCT 353
||||..|| |.|||| |||..|...||||| |.| |.|||||.||
BPUM_2599___y 313 TTCATGCCTGCGAGAAAA-CAAATTCTTTTTGC--CTGTTCAGTTTCACT 359
BSNT_01852___ 354 TTTAAACCCGCATGCCATTCTGGACACGATCGGCGTCATCGGCACGAGCT 403
||||||.||.||.||||||||.||.||.||.|||||.||.||.||.|..|
BPUM_2599___y 360 TTTAAATCCCCACGCCATTCTCGATACCATTGGCGTGATTGGAACAAATT 409
BSNT_01852___ 404 CTCTTCAATAT-TCGGGGCTTGAGAAATGGCTCTTTATGGCCGCCTGCAT 452
|.||||||||| .|||||| .||.||||||...||||....|||.||.||
BPUM_2599___y 410 CCCTTCAATATAACGGGGC-AGAAAAATGGGCATTTACACTCGCTTGTAT 458
BSNT_01852___ 453 CGCTGTGTCTTGGATTTGGTTCATCAGCCTTGCAATAGCGGGTCGGTTGT 502
|...|||||.|||.|.|||||.||..|.||.|| |.|
BPUM_2599___y 459 CATCGTGTCCTGGTTATGGTTTATTGGGCTCGC--------------TCT 494
BSNT_01852___ 503 TTCA--------------GACGATAGATACGAGCGGCAGGCTTATGCTGA 538
||.| ||.|.||||.||.|.|||||.| || ||
BPUM_2599___y 495 TTTAGGGAAGATGCTAGGGAAGTTAGACACAAACGGCAAG----TG--GA 538
BSNT_01852___ 539 T----CGTA--AACAAATGCTCTGCAGCGGTAATG---TGGGCAGCGGCA 579
| |||| ||.||| .||.||||.||.||| |||...|..|||
BPUM_2599___y 539 TGAACCGTATCAATAAA---GCTTCAGCAGTCATGATTTGGCTTGTCGCA 585
BSNT_01852___ 580 GGATATTTTGGGGTGTCACTCTTTTGCAATTGA-------- 612
..|||..||||| |..|||||||
BPUM_2599___y 586 TTATACATTGGG-----------TATCAATTGATTGTATAA 615
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