Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04428 and BPUM_2593
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:59
# Commandline: needle
# -asequence dna-align/BSNT_04428___ytsB.1.24716.seq
# -bsequence dna-align/BPUM_2593___ytsB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04428___ytsB-BPUM_2593___ytsB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04428___ytsB-BPUM_2593___ytsB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04428___ytsB
# 2: BPUM_2593___ytsB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1087
# Identity: 672/1087 (61.8%)
# Similarity: 672/1087 (61.8%)
# Gaps: 164/1087 (15.1%)
# Score: 1789.5
#
#
#=======================================
BSNT_04428___ 1 ATGATTAAAGCATTCCTTATCGAAAGGCGGAGCTGGATTGCCG--CTTT- 47
|||.|..|||||||..|.|..|||.|..|.||||||||| |.| ||||
BPUM_2593___y 1 ATGCTGCAAGCATTTTTAAAGGAACGAAGAAGCTGGATT-CTGTTCTTTC 49
BSNT_04428___ 48 TTTGTTTCAGCAGGCT-TTGATGCTGTTCATTGTTTTTGTCGATCCTTCC 96
||.|||| ||| ||| .|.||.|||||..|||.||||.|.|||.|..||
BPUM_2593___y 50 TTAGTTT--GCA-GCTCCTCATTCTGTTTGTTGCTTTTTTGGATACGACC 96
BSNT_04428___ 97 ATATCATTTGGGAATGTACTTTATATGGTG-TATTTGTGCAT-TTTGTTT 144
||..||.|.|.|..|.|..|||||||.||| |||| || |..||||
BPUM_2593___y 97 ATTCCAATGGCGTCTCTTTTTTATATTGTGTTATT-----ATCTACGTTT 141
BSNT_04428___ 145 TTTATCATATTC-----CTTTGGTTCCGCTATCGGAAAGAAACAGCGTTT 189
||.||.||..|| |||| |||||.||.||.||||||||.||||.|
BPUM_2593___y 142 TTCATGATCGTCTTTCTCTTT--TTCCGATACCGTAAAGAAACGGCGTAT 189
BSNT_04428___ 190 TATAAAAGCTTGAAAACATGGGA-GAACAATCTCGATGTGACAGCCAT-A 237
|||.|..|..|||||..|||||| ||.| ||.|.||| ||| |
BPUM_2593___y 190 TATGAGCGTCTGAAAGAATGGGATGATC-ATATTGAT--------CATCA 230
BSNT_04428___ 238 AATGAACCGG-AAACG---------CCGTTTGAAGCAATGGTTGAAAGAA 277
|||| ||| ..||| ||.|||||| || |.|||.|
BPUM_2593___y 231 AATG---CGGCTCACGCCATCTTCCCCATTTGAA-CA--GCTTGTA---- 270
BSNT_04428___ 278 GCAT--TG------CCGGGCAAACAGAAC---ACTTGAAGCAGACCGCAG 316
||| || |.|.|||||..||.| ||..||||..|.|.||||
BPUM_2593___y 271 -CATGATGCGACGTCTGAGCAAATTGACCGCTACCGGAAGATGGCGGCAG 319
BSNT_04428___ 317 CACGGC--ATCGCTTAGCATTGGAAAATGAAAAAGATGAGCTGATGGCAT 364
.||..| ||||| |.|| |||.|.||.||.|||||..||.|..|||
BPUM_2593___y 320 AACAACAAATCGC----CCTT-GAAGAAGAGAAGGATGAATTGCTCTCAT 364
BSNT_04428___ 365 GGATCCATGAGGTCAAAACTCCATTAACAGCGATGCATTTAATCATTGAT 414
||||.|||||.||.|||||.||..|.|||||||||||.||.||.|||||.
BPUM_2593___y 365 GGATACATGAAGTGAAAACACCTCTCACAGCGATGCACTTGATGATTGAC 414
BSNT_04428___ 415 AGAATGGAAGAAAAAGCACTGAAATCCCAGCTGTCATATGAATGGCTGCG 464
.|..|...|||..|..||||||||||..|..||.||||.||||||||..|
BPUM_2593___y 415 CGCTTAACAGAGCAGCCACTGAAATCGAATATGACATACGAATGGCTCAG 464
BSNT_04428___ 465 AATTCACCTGCTTCTTGATCAGCAGCTTCATCAAAAACGGATA--TCATT 512
|||.||..|..|.||.||....|||.|.||.|.||...|.||| |||
BPUM_2593___y 465 AATCCATTTATTACTCGACGCCCAGTTGCACCGAAGCAGAATACGTCA-- 512
BSNT_04428___ 513 TATTGAAAACGATCTGTCTGTAGAATTCATTCAGCTTCAGCCTTTG---- 558
|||.|||||.|||.|.|.|.|.||| |||||..|.| ||
BPUM_2593___y 513 TATCGAAAATGATTTATTTATTGAA------CAGCTGGACC---TGCAAA 553
BSNT_04428___ 559 --ATCTT---TAAAGAAATCAAAGATTTACAATCGTGGTGTATCCAAAAA 603
|||.| .||.||||||||||...|.|||||.|||||.||.||||||
BPUM_2593___y 554 GTATCCTAGCAAAGGAAATCAAAGCGCTCCAATCATGGTGCATGCAAAAA 603
BSNT_04428___ 604 GGGATCGGTTTTGACATAAAGCTCGAGGCCAAAGAA------GTGCTGAG 647
||.|||||.|||||..|.|.|||.| ||||| ||..|.||
BPUM_2593___y 604 GGAATCGGGTTTGAACTCACGCTAG------AAGAACGTCACGTATTAAG 647
BSNT_04428___ 648 CGATGCAAAATGGCTGGCGTTTATCATCAGGCAGCTGCTGACAAACGCGG 697
.||||||||||||.|..|.|||||.|||||.|||.||||.|||||.||.|
BPUM_2593___y 648 TGATGCAAAATGGTTATCCTTTATAATCAGACAGGTGCTCACAAATGCAG 697
BSNT_04428___ 698 TGAAATACAGCGAAGCCTCTGAAATCGAGATCAAAAGCTTTCAAAAAGGG 747
|.||.||.||..|..|.|||||.||.|..||..||||| |||..
BPUM_2593___y 698 TCAAGTATAGTCATTCGTCTGATATTGCCATTGAAAGC-------AAGCA 740
BSNT_04428___ 748 GAACA--GACGCAGCTCCAAGTGAAG--GACTGT----------GGCAGG 783
.|.|| || ||||||||.| |||..| |||||.
BPUM_2593___y 741 CATCAATGA-------CCAAGTGATGCTGACGATCACAGATCAAGGCAGA 783
BSNT_04428___ 784 GGCATTGATCCAAAAGATGTACCGCGTATTTTTGATAAAGGGTTTACATC 833
||.||.||.||||.||||.|..|.|||||||||||.|||||.|||| |
BPUM_2593___y 784 GGAATAGACCCAAGAGATCTGTCTCGTATTTTTGAAAAAGGCTTTA---C 830
BSNT_04428___ 834 CACAACG-GATCACCATGATCAA-------GCGTCAACTGGCATGGGGCT 875
|.||||| || ||||| ||| ||.|||||.||.||||||||
BPUM_2593___y 831 CTCAACGAGA-CACCA----CAATGACACCGCCTCAACAGGAATGGGGCT 875
BSNT_04428___ 876 GTACTTGGCAAAAAAAGCAGC-GGCGC-CGTTATTGATCCATATTGATGT 923
.||.||..|.|||||||.||| |.||| |.|.|| |||.|.||.||.||
BPUM_2593___y 876 TTATTTAACGAAAAAAGGAGCAGACGCTCTTCAT--ATCAAGATCGAGGT 923
BSNT_04428___ 924 TGAGTCGGAGTTTGGTGCGGGAACAGTTTTTACATTAACCTTTCCAATAC 973
..|.||...|.|.|.|...||.|||...||.||.||.|.||||||.|.|.
BPUM_2593___y 924 CAACTCCACGATAGATCAAGGCACAACCTTCACCTTCATCTTTCCGAAAA 973
BSNT_04428___ 974 GGAATCAATTTGAACATGTCATA-----AGCGTGTGA 1005
.||||.|.|||| || |||| |||.|||||
BPUM_2593___y 974 AGAATGATTTTG----TG-CATATTGCGAGCATGTGA 1005
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