Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04429 and BPUM_2592
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:59
# Commandline: needle
# -asequence dna-align/BSNT_04429___ytsA.1.24716.seq
# -bsequence dna-align/BPUM_2592___ytsA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04429___ytsA-BPUM_2592___ytsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04429___ytsA-BPUM_2592___ytsA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04429___ytsA
# 2: BPUM_2592___ytsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 806
# Identity: 512/806 (63.5%)
# Similarity: 512/806 (63.5%)
# Gaps: 139/806 (17.2%)
# Score: 1745.0
#
#
#=======================================
BSNT_04429___ 0 -------------------------------------------------- 0
BPUM_2592___y 1 TTGCTTTTTTCTTGTCTGCTTCTAGCGGCAGCGCCTTTTTTCCGCTACAA 50
BSNT_04429___ 1 -------------------------------------TTGTTTAAACTTT 13
|||||||||.||.
BPUM_2592___y 51 TTACATACAAGCGAATACAAAAAGTGTGGTGCTGGTTTTGTTTAAAATTC 100
BSNT_04429___ 14 TGCTGATTGAAGATGATGAATCGCTGTTTCATGAAATCAAGGATCGTTTA 63
|.||||||||.||.|||..|.|.||.||.||.||||||||.||.|||.|
BPUM_2592___y 101 TACTGATTGAGGACGATACAACCCTCTTCCAAGAAATCAAAGAACGTCT- 149
BSNT_04429___ 64 ACGGGA--TGGTCCTATGATGTATACGGCATTCAGGA-TTTCAGTCAGGT 110
||.|| ||||||||||||||.||.||.|||||.|| ||||| .|||||
BPUM_2592___y 150 -CGTGAACTGGTCCTATGATGTTTATGGGATTCACGATTTTCA-ACAGGT 197
BSNT_04429___ 111 GCTGCAGGAATTTGCGGCGGTTAATCCTGATTGTGTCATTATTGATGTAC 160
|.||||||||||..|..|.|||.|.||||||...||||||||||||.|||
BPUM_2592___y 198 GATGCAGGAATTCACTTCTGTTCAGCCTGATCTCGTCATTATTGATATAC 247
BSNT_04429___ 161 AGCTGCCTAAATTTGACGGCTTTCATTGGTGCCGGCAGATCCGCTCCCGG 210
||||.||.||||..||.||.|||||.||||||||...|||.||....|..
BPUM_2592___y 248 AGCTTCCAAAATACGATGGTTTTCACTGGTGCCGAATGATTCGGCATCAT 297
BSNT_04429___ 211 TCAAATGTTCCGATTCTCTTTTTATCCTCCCGGGATCATCCTGCTGATAT 260
||||||||.|||||..||||..|.|||||.||.||.||||||||||||||
BPUM_2592___y 298 TCAAATGTACCGATCATCTTCCTCTCCTCTCGTGACCATCCTGCTGATAT 347
BSNT_04429___ 261 GGTGATGTCCATGCAGCTCGGGGCAGATGACTTTATCCAAAAGCCATTTC 310
|||.|||||.|||||||||||.||.|||||.|||.|.||||||||.||||
BPUM_2592___y 348 GGTCATGTCAATGCAGCTCGGCGCCGATGATTTTGTACAAAAGCCGTTTC 397
BSNT_04429___ 311 ATTTTGATGTGCTGATCGCGAAAATCCAAGCGATGTTC--CGGCGTGTGC 358
|.|||||.|||||.||.||.|||.|| ||.|..|||| ||..|.||.|
BPUM_2592___y 398 ACTTTGACGTGCTCATTGCCAAAGTC--AGTGCCGTTCTTCGCAGAGTAC 445
BSNT_04429___ 359 ACCATTATAATACGGAGCCGAATAC--GATTAAAACG---TGGTGCGGCG 403
|..||||||||.|.||.|| |.| |.||||| | ||||||||||
BPUM_2592___y 446 ATGATTATAATGCAGAACC---TGCCAGCTTAAA--GGTATGGTGCGGCG 490
BSNT_04429___ 404 CTGCTGTAGACGCGGAGCAGAACCTCGTCAGCAATGACAAAGGATC---- 449
||.|..|.||....||..|.|||..|| |.|||||.||||
BPUM_2592___y 491 CTACAATTGATCTAGAAAAAAACACCG-------TTACAAATGATCACGG 533
BSNT_04429___ 450 ---TGTTGAACTGACCAAAAATGAAATGTTCATTCTAAAACAATTAATAG 496
.||.|||.|.||.|||||||||.||||.|||||.||..||||.||..
BPUM_2592___y 534 TGAAGTGGAATTAACGAAAAATGAACTGTTTATTCTTAAGGAATTGATTC 583
BSNT_04429___ 497 AGCAAAAAAACAAGATCGTCAGCCGGGAAGAGCTGA-TCAGAAGC-TTGT 544
|.||.|||||..|.||.||||||||||||..|||.| || |||| .|||
BPUM_2592___y 584 AACATAAAAATCATATTGTCAGCCGGGAATCGCTCATTC--AAGCACTGT 631
BSNT_04429___ 545 GGAACGATGAGCGTTTTGTTAGTGATAATACGCTGACCGTCAATGTCAAT 594
||.|.|||||.||.|||||.|||||.|||||.||.||.||.||.||||||
BPUM_2592___y 632 GGGAGGATGAACGATTTGTCAGTGACAATACACTTACTGTGAACGTCAAT 681
BSNT_04429___ 595 CGCCTGCGAAAAAAACTGGACG----CCCTGCAGCTTGGCGCATATATCG 640
|||||..||||||||||.||.| |.|| ||||||.|.||.||.|
BPUM_2592___y 682 CGCCTTAGAAAAAAACTAGATGAGATCTCT----CTTGGCACCTACATTG 727
BSNT_04429___ 641 AGACAAAGGTGGGCCAGGGCTACATCGCGAAGGAAGAGGACAAGTTCTAT 690
|||||||.||||||||.||||||.|.||.||.|||.||| |.|.||.||
BPUM_2592___y 728 AGACAAAAGTGGGCCAAGGCTACCTTGCAAAAGAAAAGG--ATGATCAAT 775
BSNT_04429___ 691 GATTAA 696
||
BPUM_2592___y 776 GA---- 777
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