Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04429 and BPUM_2592

See Amino acid alignment / Visit BSNT_04429 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:59
# Commandline: needle
#    -asequence dna-align/BSNT_04429___ytsA.1.24716.seq
#    -bsequence dna-align/BPUM_2592___ytsA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04429___ytsA-BPUM_2592___ytsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04429___ytsA-BPUM_2592___ytsA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04429___ytsA
# 2: BPUM_2592___ytsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 806
# Identity:     512/806 (63.5%)
# Similarity:   512/806 (63.5%)
# Gaps:         139/806 (17.2%)
# Score: 1745.0
# 
#
#=======================================

BSNT_04429___      0 --------------------------------------------------      0
                                                                       
BPUM_2592___y      1 TTGCTTTTTTCTTGTCTGCTTCTAGCGGCAGCGCCTTTTTTCCGCTACAA     50

BSNT_04429___      1 -------------------------------------TTGTTTAAACTTT     13
                                                          |||||||||.||.
BPUM_2592___y     51 TTACATACAAGCGAATACAAAAAGTGTGGTGCTGGTTTTGTTTAAAATTC    100

BSNT_04429___     14 TGCTGATTGAAGATGATGAATCGCTGTTTCATGAAATCAAGGATCGTTTA     63
                     |.||||||||.||.|||..|.|.||.||.||.||||||||.||.|||.| 
BPUM_2592___y    101 TACTGATTGAGGACGATACAACCCTCTTCCAAGAAATCAAAGAACGTCT-    149

BSNT_04429___     64 ACGGGA--TGGTCCTATGATGTATACGGCATTCAGGA-TTTCAGTCAGGT    110
                      ||.||  ||||||||||||||.||.||.|||||.|| ||||| .|||||
BPUM_2592___y    150 -CGTGAACTGGTCCTATGATGTTTATGGGATTCACGATTTTCA-ACAGGT    197

BSNT_04429___    111 GCTGCAGGAATTTGCGGCGGTTAATCCTGATTGTGTCATTATTGATGTAC    160
                     |.||||||||||..|..|.|||.|.||||||...||||||||||||.|||
BPUM_2592___y    198 GATGCAGGAATTCACTTCTGTTCAGCCTGATCTCGTCATTATTGATATAC    247

BSNT_04429___    161 AGCTGCCTAAATTTGACGGCTTTCATTGGTGCCGGCAGATCCGCTCCCGG    210
                     ||||.||.||||..||.||.|||||.||||||||...|||.||....|..
BPUM_2592___y    248 AGCTTCCAAAATACGATGGTTTTCACTGGTGCCGAATGATTCGGCATCAT    297

BSNT_04429___    211 TCAAATGTTCCGATTCTCTTTTTATCCTCCCGGGATCATCCTGCTGATAT    260
                     ||||||||.|||||..||||..|.|||||.||.||.||||||||||||||
BPUM_2592___y    298 TCAAATGTACCGATCATCTTCCTCTCCTCTCGTGACCATCCTGCTGATAT    347

BSNT_04429___    261 GGTGATGTCCATGCAGCTCGGGGCAGATGACTTTATCCAAAAGCCATTTC    310
                     |||.|||||.|||||||||||.||.|||||.|||.|.||||||||.||||
BPUM_2592___y    348 GGTCATGTCAATGCAGCTCGGCGCCGATGATTTTGTACAAAAGCCGTTTC    397

BSNT_04429___    311 ATTTTGATGTGCTGATCGCGAAAATCCAAGCGATGTTC--CGGCGTGTGC    358
                     |.|||||.|||||.||.||.|||.||  ||.|..||||  ||..|.||.|
BPUM_2592___y    398 ACTTTGACGTGCTCATTGCCAAAGTC--AGTGCCGTTCTTCGCAGAGTAC    445

BSNT_04429___    359 ACCATTATAATACGGAGCCGAATAC--GATTAAAACG---TGGTGCGGCG    403
                     |..||||||||.|.||.||   |.|  |.|||||  |   ||||||||||
BPUM_2592___y    446 ATGATTATAATGCAGAACC---TGCCAGCTTAAA--GGTATGGTGCGGCG    490

BSNT_04429___    404 CTGCTGTAGACGCGGAGCAGAACCTCGTCAGCAATGACAAAGGATC----    449
                     ||.|..|.||....||..|.|||..||       |.|||||.||||    
BPUM_2592___y    491 CTACAATTGATCTAGAAAAAAACACCG-------TTACAAATGATCACGG    533

BSNT_04429___    450 ---TGTTGAACTGACCAAAAATGAAATGTTCATTCTAAAACAATTAATAG    496
                        .||.|||.|.||.|||||||||.||||.|||||.||..||||.||..
BPUM_2592___y    534 TGAAGTGGAATTAACGAAAAATGAACTGTTTATTCTTAAGGAATTGATTC    583

BSNT_04429___    497 AGCAAAAAAACAAGATCGTCAGCCGGGAAGAGCTGA-TCAGAAGC-TTGT    544
                     |.||.|||||..|.||.||||||||||||..|||.| ||  |||| .|||
BPUM_2592___y    584 AACATAAAAATCATATTGTCAGCCGGGAATCGCTCATTC--AAGCACTGT    631

BSNT_04429___    545 GGAACGATGAGCGTTTTGTTAGTGATAATACGCTGACCGTCAATGTCAAT    594
                     ||.|.|||||.||.|||||.|||||.|||||.||.||.||.||.||||||
BPUM_2592___y    632 GGGAGGATGAACGATTTGTCAGTGACAATACACTTACTGTGAACGTCAAT    681

BSNT_04429___    595 CGCCTGCGAAAAAAACTGGACG----CCCTGCAGCTTGGCGCATATATCG    640
                     |||||..||||||||||.||.|    |.||    ||||||.|.||.||.|
BPUM_2592___y    682 CGCCTTAGAAAAAAACTAGATGAGATCTCT----CTTGGCACCTACATTG    727

BSNT_04429___    641 AGACAAAGGTGGGCCAGGGCTACATCGCGAAGGAAGAGGACAAGTTCTAT    690
                     |||||||.||||||||.||||||.|.||.||.|||.|||  |.|.||.||
BPUM_2592___y    728 AGACAAAAGTGGGCCAAGGCTACCTTGCAAAAGAAAAGG--ATGATCAAT    775

BSNT_04429___    691 GATTAA    696
                     ||    
BPUM_2592___y    776 GA----    777


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