Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05988 and BPUM_2587
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:31
# Commandline: needle
# -asequence dna-align/BSNT_05988___deaD.1.24716.seq
# -bsequence dna-align/BPUM_2587.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05988___deaD-BPUM_2587.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05988___deaD-BPUM_2587.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05988___deaD
# 2: BPUM_2587
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1573
# Identity: 979/1573 (62.2%)
# Similarity: 979/1573 (62.2%)
# Gaps: 263/1573 (16.7%)
# Score: 2776.5
#
#
#=======================================
BSNT_05988___ 1 ATGAGTCATTTTAAAAACT--ATCAA-ATC-----AGTCATGACATTTT- 41
|||| ||||..||.||.| ||||| ||| |||.|||| |||
BPUM_2587 1 ATGA--CATTACAACAATTTGATCAATATCCATTAAGTGATGA---TTTA 45
BSNT_05988___ 42 --ACGAGCATTGGAAGGACTGGGAT-------ATACAGAACCGACCAAGG 82
||.|||..|..|||.||| | |||| |||.||....|
BPUM_2587 46 AAACAAGCGCTAAAAGCACT----TCACTTCCATAC---ACCTACACCTG 88
BSNT_05988___ 83 TGCAGCAGAGTGTGA---TCCCCGCTGCCCT---AGAACGAAAGGATCTT 126
|.||||| ||.|| |..|||.|||..| |.|.| |||||||.
BPUM_2587 89 TTCAGCA---TGAGACATTATCCGTTGCTTTTTCAAAGC---AGGATCTA 132
BSNT_05988___ 127 GTCGTCAAATCACAGACAGGAAGCGGGAAAACGGCTTCGTTCGGGATTCC 176
.||||||||||.|||||.||.||.||.||.|||||..|.|..||..|.||
BPUM_2587 133 ATCGTCAAATCTCAGACTGGTAGTGGCAAGACGGCAGCCTATGGCCTGCC 182
BSNT_05988___ 177 TCTCTGTGAGCTGGCGGATTGGGATGAAAACAAGCCGCAGGCGCTTATTT 226
..|.|||||..|||..|||||||.||||||.||.||.||.||.||.||..
BPUM_2587 183 GATTTGTGAAATGGTTGATTGGGCTGAAAATAAACCTCAAGCCCTCATCC 232
BSNT_05988___ 227 TAACTCCAACCCGTGAGCTTGCGGTGCAAGTAAAGGAAGATATCACGAAC 276
|...||||||.||.||.||.||..||||.||.||..|.||..|.||.|.|
BPUM_2587 233 TCGTTCCAACGCGAGAACTCGCCATGCAGGTCAAACAGGACCTTACAAGC 282
BSNT_05988___ 277 ATCGGACGATTTAAACGGATCAAAGCGACAGCCGTATTTGGAAAATCCTC 326
.|.||||||||.|||||.||||||||..|||||.|.|||||||||.|| |
BPUM_2587 283 CTTGGACGATTGAAACGAATCAAAGCCGCAGCCATTTTTGGAAAAGCC-C 331
BSNT_05988___ 327 CTTTGATAAA---CAAAAAGCTGAGCTTAAGCAAAAAAGTCACATTGT-T 372
|||| |.|| ||||||...||||||...|||||||..|||||||| |
BPUM_2587 332 CTTT--TCAAGCCCAAAAAATAGAGCTTGCACAAAAAAACCACATTGTAT 379
BSNT_05988___ 373 GTCGGTACGCCGGGACGTGTTCTGGATCATATCGAAAAAGGCACGCTGCC 422
| |||.||.||.|||||.||..|||||||..|.||.|||||.||.||..|
BPUM_2587 380 G-CGGAACACCTGGACGAGTCTTGGATCACCTTGAGAAAGGTACTCTTTC 428
BSNT_05988___ 423 GTTGG--ATCGTCTCTCTTA----TTTGGTCATTGATGAAGCGGATGAGA 466
.||.| |.| |||| |||.||..|.||||||||||||||.|
BPUM_2587 429 CTTAGAAAAC------CTTAAATTTTTCGTGTTAGATGAAGCGGATGAAA 472
BSNT_05988___ 467 TGCTGAATATGGGCTTTATCGAGCAGGTGGAGGCGATTATCAAGCATCTT 516
|||||||.|||||.|||||.||.||.||.....|.|||||..||.||||.
BPUM_2587 473 TGCTGAACATGGGATTTATTGATCAAGTCTCTTCTATTATTCAGTATCTG 522
BSNT_05988___ 517 CCGACTGAGCGCACGACGATGCTGTTTTCGGCGACGCTGCCAGAGGACAT 566
|||.|..||||||.|.|.|||||||||||.|||||..||.|.||.||.||
BPUM_2587 523 CCGCCAAAGCGCATGTCAATGCTGTTTTCAGCGACCATGTCTGATGAGAT 572
BSNT_05988___ 567 TGAGAAATTAAG----CCGT-----CAAT-ATATGCAAAACCCGGAGCAT 606
..|||||||||| |.|| |||| | .||||| |.|
BPUM_2587 573 GAAGAAATTAAGTGAACAGTTTCTACAATCA---CCAAAA----GTG--- 612
BSNT_05988___ 607 ATCGAAAT--CA-------AAGCGGCCGGGCTTACCACAAGAAATATTGA 647
||.||||| || ||.||.|.| |.|||||| ||...
BPUM_2587 613 ATTGAAATTGCACGGGAAGAAACGTCTG----TGCCACAA-----ATCAC 653
BSNT_05988___ 648 ACATGCGGTGATTCAA--GTAAG-AGAAGAGAATAAATTTTCATTGCT-- 692
.||..|.||||||.|| |.|.| |||||.| |||||.||..|.||
BPUM_2587 654 CCACACCGTGATTGAAACGGAGGAAGAAGCG---AAATTCTCTCTTCTTC 700
BSNT_05988___ 693 ---GAAAGAT-GTGCTGATGACGGAGAATCCCGACAGCTGCATCATTTTC 738
|.|.||| | |||..||.|||||.||.||||||||.||||||
BPUM_2587 701 AGCGTACGATCG------TGATTGAAAATCCAGATAGCTGCATTATTTTC 744
BSNT_05988___ 739 TG------------CCGAACGAAAGAGCACGTCAATCAGCTGACCGATGA 776
|| ||||..|||.|| |.||| |.||||
BPUM_2587 745 TGTAATACACAGGACCGAGTGAACGA-------ACTCA------CAATGA 781
BSNT_05988___ 777 A--TTGGATGACTTAGGATAT-CCATGCGATAAAATTCACGGCGGAATGA 823
| || ||||| .|.||||.| ||.||.||.||||||||.||.||.||||
BPUM_2587 782 AGCTT-GATGA-GTGGGATGTGCCCTGTGACAAAATTCATGGAGGCATGA 829
BSNT_05988___ 824 TTCAGGAAGACCGATTCGACGTCATGAATGAATTTAAACGTGGCGAGTAC 873
..|||||||||||.||||..||||||.|||||||.|||...||.||||.|
BPUM_2587 830 GACAGGAAGACCGCTTCGCTGTCATGGATGAATTCAAAAACGGTGAGTTC 879
BSNT_05988___ 874 CGTTACTTAGTGGCGACGGATGTCGCCGCGCGCGGGATTGAT---ATTGA 920
|||||.||..|.||.||.|||.|.||.||.||.||.|||||| |.||
BPUM_2587 880 CGTTATTTGATTGCAACCGATATAGCAGCCCGGGGTATTGATGTCAGTG- 928
BSNT_05988___ 921 AAATATCTCCCTTGTTATCAACTATGATCTTCCGGTTGAAAAGGAAAGCT 970
||||..|.|.|||.||..|.||||||||.||...||||||.||..|||
BPUM_2587 929 --ATATGACACATGTGATTCATTATGATCTCCCCTATGAAAAAGAGCGCT 976
BSNT_05988___ 971 ATGTCCACCGCACGGGCCGAACGGGACGCGCGGGGAACAAAGGAAAGGCC 1020
||.|.|||.|.||.||..||||.||..|.|||||.||.|..|||||..||
BPUM_2587 977 ATATTCACAGAACAGGAAGAACAGGCAGAGCGGGAAAAAGCGGAAAAACC 1026
BSNT_05988___ 1021 ATTTCGTTTGTCACGGCCTTCGAAA---AACGGTTTTTAGCCGACATTGA 1067
|||.|.|||.|.|| ..|||| || ||||
BPUM_2587 1027 ATTGCATTTATGAC-----AAGAAATGCAA--------AGCC-------- 1055
BSNT_05988___ 1068 AGAATATATCGGATT--TGAAATCCAAAAAATA-GAAGCCCCT-----TC 1109
||.|||| ||||.| ||||.| |||||...| |.
BPUM_2587 1056 --------TCTGATTGATGAATT----AAAAGAGGAAGCAGGTATTGATT 1093
BSNT_05988___ 1110 TCAAGAGGAAG---TGGC-----AAGGAAG----AAACCAGAATTTCTA- 1146
||||||.|.|| |..| ||||||| |.|.|||.||.||.|
BPUM_2587 1094 TCAAGACGCAGCCATACCCAACAAAGGAAGACGCAGAGCAGCATGTCGAA 1143
BSNT_05988___ 1147 -GCT-------AAACTGAATGA----CCG--TCCGGAAAGCAAAAAGGAC 1182
||| ||| ||.||| ||| || |||||||
BPUM_2587 1144 CGCTTTGAAGAAAA--GATTGAAACGCCGATTC---------AAAAGGA- 1181
BSNT_05988___ 1183 AAA-----AGCGAAGAGTTGAATAAAGACATTATGAAGCTGTATTTTAAC 1227
||| ||..|.|.|||||| |||||.||.||||||||.|||||||||
BPUM_2587 1182 AAATAAACAGGCAGGCGTTGAA-AAAGATATAATGAAGCTTTATTTTAAC 1230
BSNT_05988___ 1228 GGCGGAAAGAAAAAGAAAATCAGAGCCGTTGATTTTGTAGGAACGATTGC 1277
|||||.|||||||||||..|..|.||.||||||||.||.||.||.|||||
BPUM_2587 1231 GGCGGGAAGAAAAAGAAGCTGCGGGCTGTTGATTTCGTTGGGACCATTGC 1280
BSNT_05988___ 1278 CAAAATTGACGGTGTGTCAGCTGACGACATCGGCATCATCACGATCATGG 1327
||||||.|||||.||..|...|||.|||||.||.||.||.||.|||...|
BPUM_2587 1281 CAAAATAGACGGCGTTGCCTTTGATGACATTGGAATTATTACCATCCAAG 1330
BSNT_05988___ 1328 AT-----AACGCCTCATACGTTGAGATTTTAAATGGTAAAGGCCCTCATG 1372
|| || |||||||.||.|||.|.||.||.||||||||||.||
BPUM_2587 1331 ATACGAAAA-----CATACGTCGATATTCTTAACGGCAAAGGCCCTCTTG 1375
BSNT_05988___ 1373 TTCTCAAAGTGATGAAGAACACAACCGTCAAAGGGAAACAGCTGAAGGTG 1422
|.||.||.|..|||....||||||||.|.|||||.||.|||.|.||.||.
BPUM_2587 1376 TGCTGAACGCCATGCGCCACACAACCATTAAAGGCAAGCAGTTAAAAGTT 1425
BSNT_05988___ 1423 AATAAAGCGA-----ATAAATGA 1440
.||.|||| | ||||
BPUM_2587 1426 CATGAAGC-ACGTTCATAA---- 1443
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