Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04298 and BPUM_2584
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:50
# Commandline: needle
# -asequence dna-align/BSNT_04298___yteJ.1.24716.seq
# -bsequence dna-align/BPUM_2584___yteJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04298___yteJ-BPUM_2584___yteJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04298___yteJ-BPUM_2584___yteJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04298___yteJ
# 2: BPUM_2584___yteJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 571
# Identity: 347/571 (60.8%)
# Similarity: 347/571 (60.8%)
# Gaps: 125/571 (21.9%)
# Score: 991.5
#
#
#=======================================
BSNT_04298___ 1 ATGGACGCGACAT---ATGAAGAGTTAGAGCGCAATGACATCAAAGGCCC 47
|||||..|.|||| |||||| || |.|| |||| ||
BPUM_2584___y 1 ATGGATTCTACATTCGATGAAG---TA-ACCG----------AAAG--CC 34
BSNT_04298___ 48 GC-------AAGAAGCG-------------------GAGCAGCTGA---- 67
|| |||||.|| |.|||| |||
BPUM_2584___y 35 GCAGCCAAGAAGAATCGAATCCGGCTCTTGCGAAACGTGCAG-TGATTGA 83
BSNT_04298___ 68 --CACATGCCTATGCTGGCTTTTGGGTTCGTTTCTGGGCTTTCCTGCTTG 115
||||.||.|.|||.|||||||||.||.|.||.|||||.||..|.||||
BPUM_2584___y 84 AGCACAGGCGTTTGCAGGCTTTTGGATTAGGTTTTGGGCGTTTATTCTTG 133
BSNT_04298___ 116 ATTGGCTCGTGATATGGGGATTAAACCATTTGCTCGTTTCTCCCCTCTTT 165
||||||||||..|.|||||..|.|||||||||...||||||||..|||||
BPUM_2584___y 134 ATTGGCTCGTCGTCTGGGGTGTCAACCATTTGACGGTTTCTCCGATCTTT 183
BSNT_04298___ 166 ACCGTATTGGATCTGC----CGAAAACATCCGGCATGTTTACCTTCTCGG 211
| ||.| |.||.|| |.|||..|...|| |||.|| |||||
BPUM_2584___y 184 A--GTCT--GTTCGGCTGGTCCAAAGGAGGAGG-ATGGTT---TTCTC-- 223
BSNT_04298___ 212 CCTACAGT----GTGACAACGCTTATTGTGTATCTTGC-CTATTTCGCAC 256
||.| ||.||||||...||||||| ||.||| .||||||||..
BPUM_2584___y 224 ----CATTTTCCGTCACAACGACGATTGTGT-TCCTGCTTTATTTCGCCA 268
BSNT_04298___ 257 TAATGAC-AAAATACTTCAGGCAGACGCTTGGTAAAATGGTGTTCGGCCT 305
|.||||| ||||| |||..|.||.||.|||||.|||||||||||.||..|
BPUM_2584___y 269 TCATGACGAAAAT-CTTTCGACAAACACTTGGGAAAATGGTGTTTGGGAT 317
BSNT_04298___ 306 CAAAGTGGTTT---------CTGTGAAGCGAGATAGCAAGCTGACATGGA 346
|||||||||.| |||.|||| ||.|||.|||||.
BPUM_2584___y 318 CAAAGTGGTCTCACTTCAACCTGAGAAG---------AAACTGGCATGGG 358
BSNT_04298___ 347 GTACAGTGATT---TTTCGTGAAGTGGTTGGACGGTATATTGATAAGATT 393
.| ||.||| |||.|.|||.|.||.|||||.||.|||.|||.|.||
BPUM_2584___y 359 AT---GTCATTTTCTTTAGAGAAATTGTGGGACGCTACATTAATACGCTT 405
BSNT_04298___ 394 TGGATT-TTATATATCG---TTGTTGCTTTTTCACCTACAAAACAAGGGA 439
| || ||.|.||| | ||||||..||..||||.|.|||.||||||.
BPUM_2584___y 406 T---TTGTTCTCTAT-GCTATTGTTGGGTTCACACCGAAAAAGCAAGGGG 451
BSNT_04298___ 440 TTCATGATTACATCGCGGATACCACCGTGGTGCATGAAAAATTATA---- 485
|||||||||||.|.||.|||||....||.||.||||||.|..||||
BPUM_2584___y 452 TTCATGATTACTTTGCCGATACGGTGGTCGTCCATGAACACCTATATGAA 501
BSNT_04298___ 486 -------CCGCAA----ATAA 495
..|||| ||||
BPUM_2584___y 502 AAAACAGAAGCAAACGTATAA 522
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