Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04297 and BPUM_2583
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:50
# Commandline: needle
# -asequence dna-align/BSNT_04297___ytfI.1.24716.seq
# -bsequence dna-align/BPUM_2583___ytfI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04297___ytfI-BPUM_2583___ytfI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04297___ytfI-BPUM_2583___ytfI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04297___ytfI
# 2: BPUM_2583___ytfI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 825
# Identity: 457/825 (55.4%)
# Similarity: 457/825 (55.4%)
# Gaps: 237/825 (28.7%)
# Score: 1148.5
#
#
#=======================================
BSNT_04297___ 1 ATGCTCCTAGAGGAAGTGAAGAATA-TGGTGTATGTACTGA---CAGCCA 46
||| ||||||||| ||.||| ||.|.||.||...|| ||||
BPUM_2583___y 1 ATG------GAGGAAGTG-AGCATAGTGCTTTACGTTTGGATCGCAGC-- 41
BSNT_04297___ 47 TTCTTATTCTCATAGGGATCGTACTG--CTTCTCAGAATGAAAAT--CCA 92
|.||.|..||.|.||||||.||.|| |||| ||||||.| |||
BPUM_2583___y 42 -TTTTTTGTTCCTTGGGATCTTATTGATCTTC-----ATGAAAGTGACCA 85
BSNT_04297___ 93 TGTCGCGCTGGAGTATCTTCATGCCGATGATAATGACAAATTGACCT--- 139
|.| |.|||||.|||...|||||..||||.|||||| .||||
BPUM_2583___y 86 TTT--CACTGGATTATTCACATGCAAATGACAATGAC-----CACCTTGC 128
BSNT_04297___ 140 --TGAAGATTACGGCGCTGTTTGGCCTTATAAGGA----------TCAAA 177
|||||||.| |..|||||||.||| |||||
BPUM_2583___y 129 GCTGAAGATCA----------TCACCTTATATGGAATCATCAGACTCAAA 168
BSNT_04297___ 178 AAA-ACAATCCCGGCGATTAAGGTGA---ACAA---AGAAGACGGAACAG 220
||| |||.|| |||| ||||| .||| |||||
BPUM_2583___y 169 AAAGACATTC----CGAT---GGTGAGGGTCAATCCAGAAG--------- 202
BSNT_04297___ 221 TGGATATCAAACAAAAAACTGA-ATCCAAAATGAAAAAAAG-----CAGC 264
||||||| .|.||| || |..||||||.||| .|||
BPUM_2583___y 203 -----ATCAAAC----GATTGATAT---ACGTGAAAAGAAGATGGCGAGC 240
BSNT_04297___ 265 G----GA---------AAGAAAAA-AAT---TACA-----------CAAA 286
| || |.|||||| ||| |||| .|||
BPUM_2583___y 241 GCCCAGACCCCTAGTCACGAAAAAGAATCCATACATAATAAAGTGGGAAA 290
BSNT_04297___ 287 AC--GATGTGCAGCAAAGCATTAATAAAATCGAAATGCTTTTGCATCAGG 334
|| |||.||.||||||.|.||.||.||||.|| || |.||||
BPUM_2583___y 291 ACGTGATATGAAGCAAATCCTTCATCAAATGGA---GC----GTATCA-- 331
BSNT_04297___ 335 TCACCAGA------CTACGGAAA----ATCAGCGCGTCTTTTCTCGCGCA 374
||..||| |.|...||| |||| .||||...|||| .||
BPUM_2583___y 332 -CAAAAGAGATCGTCGATTTAAACCGGATCA-TGCGTAAATTCT---TCA 376
BSNT_04297___ 375 TTTACA--------------TATCACAAAACTAGAATGGGTTACAGTAAT 410
||.||| |.|||| |||...|||...||
BPUM_2583___y 377 TTCACATGAGGATTATATCGTTTCAC----------TGGTCAACATGGAT 416
BSNT_04297___ 411 CGGAATTCAGGACGCGGCAGTGACAGGTGTGTTAACAGGTGCTGTATGGG 460
|||..||||.|||||.||..|.||||||||...|.|.||.|..||||||.
BPUM_2583___y 417 CGGCTTTCATGACGCCGCTTTAACAGGTGTAGCAGCTGGCGGGGTATGGT 466
BSNT_04297___ 461 GTGTGAAGGGCGGTATCGCAGCAATGCT---CT------ACGACCACCTG 501
..||.||.|| ||||.|.|| || |.||.||.||.
BPUM_2583___y 467 CAGTCAAAGG---------AGCACTCCTTGCCTTTATGCAGGAGCATCTC 507
BSNT_04297___ 502 GACTTTGTGAATAAACCTGTCTATGAGGTGATCCCGTCGTTTCAAGTCCC 551
..||||..|.|||||||.||.|||||.||.||.||..|.|||||...|..
BPUM_2583___y 508 ACCTTTAAGCATAAACCGGTATATGAAGTCATTCCTGCCTTTCAGCACAA 557
BSNT_04297___ 552 TGTTTCCAAGACCCA-TTTTCAGTGTATATTCTT-TTTTCGCTTTGGACA 599
|||.||..||||||| |||.|| |||||| .||| ||||||..|||||||
BPUM_2583___y 558 TGTGTCACAGACCCAGTTTACA-TGTATA-GCTTATTTTCGTATTGGACA 605
BSNT_04297___ 600 TGCTATGCTTGCAGCTTTCAAATTCGTCAAATACGGACGGGAGCTATCCG 649
||||||||||||||| .||||||..|.| |.|||.
BPUM_2583___y 606 TGCTATGCTTGCAGC-----CATTCGTTTACT------------TGTCCA 638
BSNT_04297___ 650 T--ATTAAA--GAAGAATCCGTCGGCTAGAA--------TGACTTCA--- 684
| .||||| |||||| .|||.|||| |..|||||
BPUM_2583___y 639 TTGGTTAAAAGGAAGAA-----AGGCGAGAAAAAGTGCCTCTCTTCAAGC 683
BSNT_04297___ 685 ----AAGAATGATTCATCAGTTTAA 705
||||||||.|||||.||||||
BPUM_2583___y 684 AACGAAGAATGAATCATCTGTTTAA 708
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