Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04294 and BPUM_2580
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:50
# Commandline: needle
# -asequence dna-align/BSNT_04294___ytxK.1.24716.seq
# -bsequence dna-align/BPUM_2580___ytxK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04294___ytxK-BPUM_2580___ytxK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04294___ytxK-BPUM_2580___ytxK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04294___ytxK
# 2: BPUM_2580___ytxK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1059
# Identity: 688/1059 (65.0%)
# Similarity: 688/1059 (65.0%)
# Gaps: 153/1059 (14.4%)
# Score: 2076.5
#
#
#=======================================
BSNT_04294___ 1 ATGCAAAAAGACCATGTAGGTGCGGTGTATGAGCTGTTAAACGA---AGC 47
.||||.|||||.||.|||.||.||.|.|..|||.||.| ||| |||
BPUM_2580___y 1 TTGCAGAAAGATCAAGTAAGTACGATTTTCGAGTTGCT---CGATACAGC 47
BSNT_04294___ 48 CGCGATT--ATGATAAAGAATGAATTGCA---GATTTCATATATAGAGGC 92
..|.||| || ||||.||.||| || .|||||.|||||.||.||
BPUM_2580___y 48 TTCTATTCGAT--TAAAAAAGGAA---CAAAGCATTTCCTATATTGAAGC 92
BSNT_04294___ 93 GCTGGCCGAAGCAGGAGAAATGTATTTTCTTGAAAAAACGGATC--AGCT 140
..||||.|||||.|||||| |..|||| || |||
BPUM_2580___y 93 ATTGGCTGAAGCGGGAGAA--GCCTTTT--------------TCCAAGC- 125
BSNT_04294___ 141 GAAACTGCCTGCTGATCAGAAA------ACCAAACAACTTCAGGCTCTGC 184
||| ||||| ||.| ||.|| |||.|.|..
BPUM_2580___y 126 -AAA--------TGATC-GAGACGGTTTACTAA--------AGGATGTAA 157
BSNT_04294___ 185 TTGAAAAAGCGGAATTCGGCACGTATGAGCATGAGTGGGTACGCAAGGCT 234
|.||.|||||.||.||.|.|.|.|||||.||||||..|.|.||.||.||.
BPUM_2580___y 158 TAGAGAAAGCAGATTTTGCCTCTTATGATCATGAGCAGATTCGTAAAGCG 207
BSNT_04294___ 235 TTTCAGCTTGCCGTCCTTAAAGGAATGAAAGATATCTCTCATCCAAACAG 284
||||||||.|||||..|.||||||...||.|||||.||.||||||||..|
BPUM_2580___y 208 TTTCAGCTCGCCGTATTAAAAGGACAAAAGGATATTTCCCATCCAAATCG 257
BSNT_04294___ 285 ACAAATGACGCCGGATACGATCGGGCTTTTCATCAGCTATTTGGTGAATA 334
.||.|||||.||.||||||||||||||.||..||||.||||||||.||||
BPUM_2580___y 258 TCAGATGACCCCAGATACGATCGGGCTGTTTGTCAGTTATTTGGTAAATA 307
BSNT_04294___ 335 AGTTTAT-GGCGGACAAAAAGGAAC----TGACCATTC-TTGATCCAGCC 378
|.|||.| |..||.|||||| ||.| || || ||||||||||.
BPUM_2580___y 308 AATTTTTAGAAGGTCAAAAA-GAGCTAGTTG-----TCTTTGATCCAGCA 351
BSNT_04294___ 379 TTGGGAACTGGGAACCTTCTGTTTACCGTGCTGAACCAGCTGTCTGAAAA 428
...|||||.||||||.|.|||.||.|.||..|.||..|.|||.|||.|.|
BPUM_2580___y 352 GCAGGAACAGGGAACTTACTGCTTGCTGTCTTAAATAATCTGACTGCAGA 401
BSNT_04294___ 429 AACGGCAAA---CAGCTTTGGCAT-TGAAATTGATGATGTGCTCTTGAAA 474
|| |||| |.||||| |||| |||||||||||||||.|||.|.|||
BPUM_2580___y 402 AA---CAAAGCGCGGCTTT-GCATCTGAAATTGATGATGTCCTCATCAAA 447
BSNT_04294___ 475 ATCGCCTATGCCCAAGCGAACCTTCTGAAA---AAAGAGCTTGAGCTTTT 521
||.||.|..||.||.|||||| .||.|| ||.||..|.||||||||
BPUM_2580___y 448 ATTGCATGGGCACAGGCGAAC---TTGGAAGAGAAGGAAGTCGAGCTTTT 494
BSNT_04294___ 522 CCACCAGGACAGCCTTGAGCCGTTGTTTATTGATCCAGTTGACACGGTCA 571
|||.||.|||||||||||||||.|.||.||...||||||.|| .||||
BPUM_2580___y 495 CCATCAAGACAGCCTTGAGCCGCTTTTAATCTCTCCAGTAGA---TGTCA 541
BSNT_04294___ 572 ---TTTGTGATCTGCCAGTCGGCTATTATCCGAATGACGAAGGAGCAGAA 618
|.||...|||||||||.||.||||||||.|||||.|||.|.||||.|
BPUM_2580___y 542 CTGTATGCAGTCTGCCAGTTGGATATTATCCAAATGATGAACGTGCAGCA 591
BSNT_04294___ 619 GCGTTTGAGCTCAAAGCTGACGAAGGCCATTCCTTCGCTCATCATCTGTT 668
|..|.|||..|.||.||..|.|||||.|||.||||.||.|||.||.|.||
BPUM_2580___y 592 GACTATGAATTAAAGGCAAAAGAAGGACATGCCTTTGCGCATTATTTATT 641
BSNT_04294___ 669 TATTGAACAGAG----CGTCAAGCATACCAAACCGGGCGGCTACTTATTT 714
|||||||||.|| ||| .||||.|||...|||||||.||||||.
BPUM_2580___y 642 TATTGAACAAAGCCTTCGT----TATACAAAAGAAGGCGGCTTCTTATTC 687
BSNT_04294___ 715 TTTATGATTCCGAATCATTTGTTTG-----AGAGCTCCCAAAGCG-GCAA 758
||.||.|||||.||..||||||||| |.|| |||||| ||||
BPUM_2580___y 688 TTCATCATTCCAAACGATTTGTTTGAAGGAAAAG-----AAAGCGTGCAA 732
BSNT_04294___ 759 GCTGAAA-CAGTTTTTCAAAGATAAGGTTCATATCAACGCACTGTTGCAG 807
|.||| .|.|||.||||||||.|||...||||.||.|||.||.|.||.
BPUM_2580___y 733 --TTAAAGGATTTTATCAAAGATCAGGCATATATGAATGCATTGATTCAA 780
BSNT_04294___ 808 CTGCCAAAATCTATTTTTAAAGACGAAGCTCATGCCAAAAGCATCCTTGT 857
||||||...||.||.||.||.|||.||...||.|||||||||.|..||||
BPUM_2580___y 781 CTGCCAGTCTCCATGTTCAAGGACAAAAAGCACGCCAAAAGCTTGTTTGT 830
BSNT_04294___ 858 GCTTC---AGAAACAAGGA-------GAGTATACGAAAGCGCCGGGGCAA 897
|.|.| ||||| ||||| ||| ..||.|||.|| .
BPUM_2580___y 831 GATGCAAAAGAAA-AAGGAAGGGCTTGAG-GCACCAAAACG--------G 870
BSNT_04294___ 898 ATTCTGCTTGCGAATCTTCCGTCTTTCTCCAATCAAAAGG---CGATGCT 944
||.|||.||||.|||||.||.|||||||| .|||||.| |.||| .
BPUM_2580___y 871 ATGCTGTTTGCCAATCTGCCATCTTTCTC---ACAAAAAGAATCAATG-G 916
BSNT_04294___ 945 TGA-TATGATGGCTCAATTTGATGAATGGTTTA------AAAAAGAAAAG 987
||| |.|.|||....||||.|||.||||||||| |||||||||.|
BPUM_2580___y 917 TGAGTGTAATGAGAAAATTAGATCAATGGTTTATAGAAGAAAAAGAAACG 966
BSNT_04294___ 988 TAA------ 990
.||
BPUM_2580___y 967 AAAGAATAG 975
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