Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04250 and BPUM_2553
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:47
# Commandline: needle
# -asequence dna-align/BSNT_04250___phoP.1.24716.seq
# -bsequence dna-align/BPUM_2553___phoP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04250___phoP-BPUM_2553___phoP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04250___phoP-BPUM_2553___phoP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04250___phoP
# 2: BPUM_2553___phoP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 739
# Identity: 542/739 (73.3%)
# Similarity: 542/739 (73.3%)
# Gaps: 26/739 ( 3.5%)
# Score: 1870.5
#
#
#=======================================
BSNT_04250___ 1 ATGAACAAGAAAATTTTAGTTGTGGATGATGAAGAATCTATTGTTACTCT 50
|||||.||.|||||.|||||||||||||||||||||||.|||||.||.||
BPUM_2553___p 1 ATGAATAAAAAAATATTAGTTGTGGATGATGAAGAATCGATTGTAACACT 50
BSNT_04250___ 51 TTTACAG-TACAATTTGGAACGGTCAGGCTATGATGTCATTACCGCCTCG 99
|.|| || ||.||..|.|||.|..|.||||||||||||.|.||.||....
BPUM_2553___p 51 TCTA-AGCTATAACCTTGAAAGAGCGGGCTATGATGTCGTCACAGCAAGA 99
BSNT_04250___ 100 GATGGGGAAGAAGCACTCAAAAAAGCGGAAACAGAGAAGCCTGATTTGAT 149
||.||.||||||||.||..|||||||.|.||..||..||||||||.|.||
BPUM_2553___p 100 GACGGAGAAGAAGCGCTTGAAAAAGCAGCAAGTGAACAGCCTGATCTCAT 149
BSNT_04250___ 150 TGTGCTTGATGTGATGCTTCCAAAATTGGACGGAATCGAAGTATGCAAGC 199
|||..|.|||.|.||||||||.|||.|||||||.||||||||.|||||.|
BPUM_2553___p 150 TGTATTAGATTTAATGCTTCCGAAAATGGACGGCATCGAAGTGTGCAAAC 199
BSNT_04250___ 200 AGCTGAGACAGCAAAAACTGATGTTTCCCATTTTAATGCTGACAGCGAAG 249
|.||||||...||||||.|||||||.||.|||||||||||||||||.|||
BPUM_2553___p 200 AACTGAGAATTCAAAAAATGATGTTCCCTATTTTAATGCTGACAGCAAAG 249
BSNT_04250___ 250 GATGAGGAATTCGACAAAGTATTAGGGCTGGAGCTCGGTGCTGATGATTA 299
||.||.|||||.||.||.||..||||.||.|||||.||.||.||||||||
BPUM_2553___p 250 GACGATGAATTTGATAAGGTGCTAGGTCTTGAGCTTGGAGCCGATGATTA 299
BSNT_04250___ 300 TATGACCAAGCCGTTCAGTCCAAGGGAAGTAAATGCGAGAGTCAAAGCGA 349
.|||||.|||||.|||||||||||.|||||...|||..|.||.|||||.|
BPUM_2553___p 300 CATGACAAAGCCATTCAGTCCAAGAGAAGTGGGTGCTCGGGTAAAAGCCA 349
BSNT_04250___ 350 TTTTAAG--GCGTTCGGAAAT---AG-CTGCGCCCTCTAGTGAGATGAAG 393
|.||.|| |.|..|.|.||| || ||||.|||.| |..||| |.||
BPUM_2553___p 350 TCTTGAGAAGAGCACAGCAATCTCAGCCTGCCCCCAC--GCAAGA-GGAG 396
BSNT_04250___ 394 AACGATGA---AATGGAAGGCCAGATCGTAATCGGCGATCTGAAAATCCT 440
||.||.|| .||.|.||..||.|||..|||.||.||.||....||..|
BPUM_2553___p 397 AAAGAAGAGATCATTGCAGATCAAATCAAAATTGGTGAACTACGCATTTT 446
BSNT_04250___ 441 GCCTGATCATTATGAAGCGTACTTT---AAAGAAAGTCAGCTTGAACTGA 487
.||.||.||.||.||||..||.||| .|||||.|| ||.|||||||
BPUM_2553___p 447 ACCAGAACACTACGAAGTCTATTTTCAGGAAGAACGT---CTAGAACTGA 493
BSNT_04250___ 488 CACCGAAAGAATTCGAACTGTTGCTCTATTTAGGCAGA--CATAAAGGCA 535
|.||.||||||||.|||||..||||.||||| ||| || ||||||||..
BPUM_2553___p 494 CGCCAAAAGAATTTGAACTACTGCTTTATTT-GGC-GAAGCATAAAGGAC 541
BSNT_04250___ 536 GAGTTCTGACAAGAGACCTGCTGCTGAGCGCAGTCTGGAATTATGATTTT 585
|.||.||.||..|.||..|..||||.||.||.||.|||||||||||.|||
BPUM_2553___p 542 GTGTCCTCACGCGTGATTTATTGCTAAGTGCCGTTTGGAATTATGACTTT 591
BSNT_04250___ 586 GCCGGAGATACGAGAATTGTTGATGTGCACATCAGCCATCTT-CGCGACA 634
||.||.|||||..|.|||||.||||||||.||.||||| ||| ||.||||
BPUM_2553___p 592 GCAGGTGATACTCGTATTGTGGATGTGCATATTAGCCA-CTTGCGGGACA 640
BSNT_04250___ 635 AAATTGAAAACAATACCAAAAAACCGATCTACATTAAAACGATTAGGGGA 684
||||||||||.||.||.||||||||.|..||.|||||||||||..|.||.
BPUM_2553___p 641 AAATTGAAAAGAACACGAAAAAACCAACATATATTAAAACGATCCGCGGC 690
BSNT_04250___ 685 TTGGGGTATAAACTGGAGGAGCCAAAAATGAATGAATAA 723
||.||.||.|||.|||||||||||||....|||||.|||
BPUM_2553___p 691 TTAGGCTACAAATTGGAGGAGCCAAAGCCAAATGAGTAA 729
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