Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04250 and BPUM_2553

See Amino acid alignment / Visit BSNT_04250 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:47
# Commandline: needle
#    -asequence dna-align/BSNT_04250___phoP.1.24716.seq
#    -bsequence dna-align/BPUM_2553___phoP.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04250___phoP-BPUM_2553___phoP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04250___phoP-BPUM_2553___phoP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04250___phoP
# 2: BPUM_2553___phoP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 739
# Identity:     542/739 (73.3%)
# Similarity:   542/739 (73.3%)
# Gaps:          26/739 ( 3.5%)
# Score: 1870.5
# 
#
#=======================================

BSNT_04250___      1 ATGAACAAGAAAATTTTAGTTGTGGATGATGAAGAATCTATTGTTACTCT     50
                     |||||.||.|||||.|||||||||||||||||||||||.|||||.||.||
BPUM_2553___p      1 ATGAATAAAAAAATATTAGTTGTGGATGATGAAGAATCGATTGTAACACT     50

BSNT_04250___     51 TTTACAG-TACAATTTGGAACGGTCAGGCTATGATGTCATTACCGCCTCG     99
                     |.|| || ||.||..|.|||.|..|.||||||||||||.|.||.||....
BPUM_2553___p     51 TCTA-AGCTATAACCTTGAAAGAGCGGGCTATGATGTCGTCACAGCAAGA     99

BSNT_04250___    100 GATGGGGAAGAAGCACTCAAAAAAGCGGAAACAGAGAAGCCTGATTTGAT    149
                     ||.||.||||||||.||..|||||||.|.||..||..||||||||.|.||
BPUM_2553___p    100 GACGGAGAAGAAGCGCTTGAAAAAGCAGCAAGTGAACAGCCTGATCTCAT    149

BSNT_04250___    150 TGTGCTTGATGTGATGCTTCCAAAATTGGACGGAATCGAAGTATGCAAGC    199
                     |||..|.|||.|.||||||||.|||.|||||||.||||||||.|||||.|
BPUM_2553___p    150 TGTATTAGATTTAATGCTTCCGAAAATGGACGGCATCGAAGTGTGCAAAC    199

BSNT_04250___    200 AGCTGAGACAGCAAAAACTGATGTTTCCCATTTTAATGCTGACAGCGAAG    249
                     |.||||||...||||||.|||||||.||.|||||||||||||||||.|||
BPUM_2553___p    200 AACTGAGAATTCAAAAAATGATGTTCCCTATTTTAATGCTGACAGCAAAG    249

BSNT_04250___    250 GATGAGGAATTCGACAAAGTATTAGGGCTGGAGCTCGGTGCTGATGATTA    299
                     ||.||.|||||.||.||.||..||||.||.|||||.||.||.||||||||
BPUM_2553___p    250 GACGATGAATTTGATAAGGTGCTAGGTCTTGAGCTTGGAGCCGATGATTA    299

BSNT_04250___    300 TATGACCAAGCCGTTCAGTCCAAGGGAAGTAAATGCGAGAGTCAAAGCGA    349
                     .|||||.|||||.|||||||||||.|||||...|||..|.||.|||||.|
BPUM_2553___p    300 CATGACAAAGCCATTCAGTCCAAGAGAAGTGGGTGCTCGGGTAAAAGCCA    349

BSNT_04250___    350 TTTTAAG--GCGTTCGGAAAT---AG-CTGCGCCCTCTAGTGAGATGAAG    393
                     |.||.||  |.|..|.|.|||   || ||||.|||.|  |..||| |.||
BPUM_2553___p    350 TCTTGAGAAGAGCACAGCAATCTCAGCCTGCCCCCAC--GCAAGA-GGAG    396

BSNT_04250___    394 AACGATGA---AATGGAAGGCCAGATCGTAATCGGCGATCTGAAAATCCT    440
                     ||.||.||   .||.|.||..||.|||..|||.||.||.||....||..|
BPUM_2553___p    397 AAAGAAGAGATCATTGCAGATCAAATCAAAATTGGTGAACTACGCATTTT    446

BSNT_04250___    441 GCCTGATCATTATGAAGCGTACTTT---AAAGAAAGTCAGCTTGAACTGA    487
                     .||.||.||.||.||||..||.|||   .|||||.||   ||.|||||||
BPUM_2553___p    447 ACCAGAACACTACGAAGTCTATTTTCAGGAAGAACGT---CTAGAACTGA    493

BSNT_04250___    488 CACCGAAAGAATTCGAACTGTTGCTCTATTTAGGCAGA--CATAAAGGCA    535
                     |.||.||||||||.|||||..||||.||||| ||| ||  ||||||||..
BPUM_2553___p    494 CGCCAAAAGAATTTGAACTACTGCTTTATTT-GGC-GAAGCATAAAGGAC    541

BSNT_04250___    536 GAGTTCTGACAAGAGACCTGCTGCTGAGCGCAGTCTGGAATTATGATTTT    585
                     |.||.||.||..|.||..|..||||.||.||.||.|||||||||||.|||
BPUM_2553___p    542 GTGTCCTCACGCGTGATTTATTGCTAAGTGCCGTTTGGAATTATGACTTT    591

BSNT_04250___    586 GCCGGAGATACGAGAATTGTTGATGTGCACATCAGCCATCTT-CGCGACA    634
                     ||.||.|||||..|.|||||.||||||||.||.||||| ||| ||.||||
BPUM_2553___p    592 GCAGGTGATACTCGTATTGTGGATGTGCATATTAGCCA-CTTGCGGGACA    640

BSNT_04250___    635 AAATTGAAAACAATACCAAAAAACCGATCTACATTAAAACGATTAGGGGA    684
                     ||||||||||.||.||.||||||||.|..||.|||||||||||..|.||.
BPUM_2553___p    641 AAATTGAAAAGAACACGAAAAAACCAACATATATTAAAACGATCCGCGGC    690

BSNT_04250___    685 TTGGGGTATAAACTGGAGGAGCCAAAAATGAATGAATAA    723
                     ||.||.||.|||.|||||||||||||....|||||.|||
BPUM_2553___p    691 TTAGGCTACAAATTGGAGGAGCCAAAGCCAAATGAGTAA    729


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