Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04247 and BPUM_2551
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Amino acid alignment /
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:46
# Commandline: needle
# -asequence dna-align/BSNT_04247___polA.1.24716.seq
# -bsequence dna-align/BPUM_2551___polA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04247___polA-BPUM_2551___polA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04247___polA-BPUM_2551___polA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04247___polA
# 2: BPUM_2551___polA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2715
# Identity: 1992/2715 (73.4%)
# Similarity: 1992/2715 (73.4%)
# Gaps: 147/2715 ( 5.4%)
# Score: 7041.0
#
#
#=======================================
BSNT_04247___ 1 ATGACGGAACGAAAA-AAATTAGTGCTTGTAGACGGAAACAGTCTGGCTT 49
|||||.| ||.|||| |||||||||.|.||.||.||||||||.||.||.|
BPUM_2551___p 1 ATGACAG-ACAAAAAGAAATTAGTGTTAGTGGATGGAAACAGCCTTGCAT 49
BSNT_04247___ 50 ACCGGGCGTTTTTTGCATTGCCGCTGTTAAGCAATGATAAAGGTGTTCAT 99
|.||.||.||||||||.||||||||.|||...|||||||||||.||.|||
BPUM_2551___p 50 ATCGAGCCTTTTTTGCTTTGCCGCTATTATCAAATGATAAAGGCGTACAT 99
BSNT_04247___ 100 ACGAATGCTGTATACGGCTTTGCGATGATTTTGATGAAAATGCTTGAGGA 149
||.||||||.|.||.||||||||||||||.||.|||||||||||.|||||
BPUM_2551___p 100 ACAAATGCTATTTATGGCTTTGCGATGATCTTAATGAAAATGCTGGAGGA 149
BSNT_04247___ 150 TGAAAAACCGACGCACATGCTGGTTGCGTTTGATGCCGGGAAAACAACAT 199
.||.||.||.||.||.|||||.||.||.||||||||.||.||||||||.|
BPUM_2551___p 150 CGAGAAGCCAACCCATATGCTCGTCGCATTTGATGCGGGAAAAACAACCT 199
BSNT_04247___ 200 TTCGTCACGGCACATTTAAAGAATATAAAGGCGGCAGACAGAAAACCCCG 249
|.||.||||..|||||||||||||||||||||||.|||||.|||||||||
BPUM_2551___p 200 TCCGCCACGAGACATTTAAAGAATATAAAGGCGGAAGACAAAAAACCCCG 249
BSNT_04247___ 250 CCTGAGCTTTCCGAACAAATGCCGTTTATCCGCGAGCTGCTGGATGCCTA 299
||.|||||.||.|||||||||||.||.|||||.||.||..|.||||||||
BPUM_2551___p 250 CCAGAGCTATCAGAACAAATGCCATTCATCCGTGAACTATTAGATGCCTA 299
BSNT_04247___ 300 CCAGATCAGCCGCTATGAACTGGAACAATATGAAGCGGATGATATTATCG 349
.|||.|.|...|.||.||.||....||||||||.||.|||||||||||||
BPUM_2551___p 300 TCAGGTGAAAAGGTACGAGCTTCCTCAATATGAGGCAGATGATATTATCG 349
BSNT_04247___ 350 GCACACTGGC---CAAATCGGCTGAAAAAGACGGATTTGAAGTAAAGGTT 396
|.|||.|||| |.| |||.|||||||||||.||||||||.||..|.
BPUM_2551___p 350 GAACATTGGCTGTCGA---GGCAGAAAAAGACGGCTTTGAAGTCAAAATC 396
BSNT_04247___ 397 TTCTCAGGGGATAAGGATTTAACCCAGCTGGCAACGGACAAAACGACAGT 446
||||||||.|||||.||.|||||.|||||..||||.||..|.||||||||
BPUM_2551___p 397 TTCTCAGGAGATAAAGACTTAACACAGCTCTCAACTGATCATACGACAGT 446
BSNT_04247___ 447 TGCCATTACGAGAAAGGGAATTACCGATGTTGAATTTTACACACCGGAGC 496
.||.|||||||.|||.||.||.||.||.||.||||..||||||||.|..|
BPUM_2551___p 447 GGCTATTACGAAAAAAGGCATCACAGAAGTCGAATACTACACACCTGCTC 496
BSNT_04247___ 497 ATGTCAAAGAGAAATATGGGCTTACG-CCTGAACAAATCATTGACATGAA 545
||.|..|||||||||||||.| |.|| ||.||.|||||||||||||||||
BPUM_2551___p 497 ATATTGAAGAGAAATATGGTC-TGCGACCAGATCAAATCATTGACATGAA 545
BSNT_04247___ 546 GGGTCTGATGGGCGATTCCTCAGATAATATTCCGGGTGTGCCCGGCGTCG 595
.||.||.|||||.|||||.|||||||||||.||.||.||.||.||.||.|
BPUM_2551___p 546 AGGGCTAATGGGAGATTCATCAGATAATATCCCAGGCGTCCCAGGTGTAG 595
BSNT_04247___ 596 GAGAAAAGACTGCGATTAAGCTTTTAAAACAATTTGATTCCGTTGAAAAG 645
|.|||||.||.||.|||||..|.|||||.||.|||||..|.|||||.||.
BPUM_2551___p 596 GCGAAAAAACAGCCATTAAATTGTTAAAGCAGTTTGAAACAGTTGAGAAC 645
BSNT_04247___ 646 CTGCTGGAGTCCATTGACGAGGTGAGCGGAAAGAAATTGAAGGAAAAGCT 695
|||||.||....|||||.||.||||||||.||.|||.||||.||||||||
BPUM_2551___p 646 CTGCTTGAACATATTGATGAAGTGAGCGGGAAAAAACTGAAAGAAAAGCT 695
BSNT_04247___ 696 TGAGGAGTTTAAGGATCAGGCATTGATGAGCAAGGAGCTTGCGACAATTA 745
|||.||.|||||.||.||.|||.|.|||||.||.|||||.|||||.|||.
BPUM_2551___p 696 TGAAGAATTTAAAGAGCAAGCAGTCATGAGTAAAGAGCTGGCGACCATTC 745
BSNT_04247___ 746 TGACG--GATGCTCCGATTGAGGT-----------ATCTGTTTCCGCCCT 782
| || ||.||.||.|||||.|| |||| ||||
BPUM_2551___p 746 T--CGTAGAAGCACCTATTGATGTGTCCAGCAAAGATCT-----CGCC-- 786
BSNT_04247___ 783 GGAATATCAAGGCTTTA-ATCGTGAACAGGTCATTGCCATCTT--TAAAG 829
||..|||| |..| ||...||.||.||.|| |..|||| |||||
BPUM_2551___p 787 ----TACGAAGG-TCCACATATGGATCAAGTGAT--CTCTCTTTATAAAG 829
BSNT_04247___ 830 ATCTTGGC-TTCAACACGCTTCTTGAACGGCTTGGAGAAGACAGTGCAGA 878
|.||.||| ||||| |||||.||.||.||.||.|||||||.| .||||
BPUM_2551___p 830 AACTAGGCTTTCAA-ACGCTGCTAGAGCGTCTAGGAGAAGCC---CCAGA 875
BSNT_04247___ 879 AGCA---GAACAGGATCAATCGTTGGAAGA--CATTA-ATGTCAAAACAG 922
|.|| |||||||.|.|| |.||| ||||| |.||.||||.|.
BPUM_2551___p 876 AACAGATGAACAGGTTGAA------GTAGACGCATTAGAAGTGAAAAAAA 919
BSNT_04247___ 923 TCACAGACGTGACAAGCGATATATTG---GTTTCTCCAT-CCGCATTTGT 968
|.||||..||.||.|||||.||..|| |.| ||| |.||..||||
BPUM_2551___p 920 TGACAGCTGTAACCAGCGAGATGCTGACAGAT----CATGCAGCCCTTGT 965
BSNT_04247___ 969 CGTTGAACAGATTGGCGATAATTATCATGAAGAGCCGATT--CTCGGATT 1016
.||.||||||.||||.|||||||||||.|| |||.|||| .||||.||
BPUM_2551___p 966 GGTAGAACAGCTTGGAGATAATTATCACGA--AGCGGATTTGATCGGTTT 1013
BSNT_04247___ 1017 TTCGATCGTAAATGAAACGGGAGCTTATTTCATTCCGAAAGACACTGCCG 1066
|.|||||...|||||||..||.||.|.|||.||..|.|||||...|||..
BPUM_2551___p 1014 TGCGATCCATAATGAAAATGGTGCGTTTTTTATGACAAAAGAAGATGCGC 1063
BSNT_04247___ 1067 TTGAGTCTGAGGTGTTTAAAGAATGGGTGGAAAATG--ACGATCAGAAGA 1114
||.|.||.||||..||||||||||||||..|..||| |||| ||||.|
BPUM_2551___p 1064 TTCAATCAGAGGCATTTAAAGAATGGGTACAGGATGAAACGA--AGAAAA 1111
BSNT_04247___ 1115 AATGGGTCTTCGA--CAGCAAGCGGGCTGTTGTCGCTTTGCGCTGGCAGG 1162
||||||||||.|| || ||..|.||.||||||||..|..|.|||||.|
BPUM_2551___p 1112 AATGGGTCTTTGATTCA--AAAAGAGCCGTTGTCGCCCTCAGATGGCATG 1159
BSNT_04247___ 1163 GCATTGAGCTGAAAGGAGCCGAGTTTGATACGCTCCTTGCGGCTTATATC 1212
...||||.||.|||||.|.|||...||||...||.||.||..|.||..||
BPUM_2551___p 1160 ATGTTGACCTAAAAGGTGTCGACAATGATGTTCTGCTCGCTTCCTACGTC 1209
BSNT_04247___ 1213 ATCAACCCGGGCAATTCATATGACGACGTTGCGAGTGTGGCTAAGGATTA 1262
.||||||||...||..|.||.||.|||||.||.|||||.||.|||||.||
BPUM_2551___p 1210 GTCAACCCGCAGAAAACTTACGAAGACGTCGCAAGTGTAGCGAAGGAATA 1259
BSNT_04247___ 1263 CGGCCTGCATATCG---TTTCAAGTGATGAATCAGTTTATGGAAAAGGAG 1309
.||.|||.|||||| |||| |||||||..|||.||.||||||||||
BPUM_2551___p 1260 TGGTCTGAATATCGCTCTTTC---TGATGAAAAAGTATACGGAAAAGGAG 1306
BSNT_04247___ 1310 CAAAACGGGCAGTGCCGTCAGAAGACGTACTGTCTGAGCACCTTGGCCGA 1359
||||.|.|||..|.||..|.|||||.|.||||...||.||.||.||.||.
BPUM_2551___p 1307 CAAAGCAGGCGATCCCACCTGAAGATGAACTGAAAGAACATCTCGGACGC 1356
BSNT_04247___ 1360 AAAGCGTTAGCGAT-TCAAAGCCTTCGGGAAAAGC-TCGTTCAAGAGCTG 1407
|||||....||||| || |||||| || |..||.||.| |||
BPUM_2551___p 1357 AAAGCAGCGGCGATCTC--AGCCTT--------GCATGATTTAACA-CTG 1395
BSNT_04247___ 1408 GAA---------AACAACGACCAGCTTGAACTGTTTGAAGAGCTGGAAAT 1448
||| ||.||.||.||.|.||||||.|.||||||..|.||..|
BPUM_2551___p 1396 GAAGCATTAGAGAAAAATGATCAACATGAACTCTATGAAGATTTAGAGCT 1445
BSNT_04247___ 1449 GCCTCTTGCGCTTATTCTT-GGCGAAATGGAATCAACTGGCGTCAAGGTC 1497
.||.|||||.||.| |||| ||.|||||||||||...|||.||||||||.
BPUM_2551___p 1446 TCCGCTTGCACTCA-TCTTAGGTGAAATGGAATCTCTTGGAGTCAAGGTA 1494
BSNT_04247___ 1498 GATGTTGACCG--TTTAAAACGGATGGGTGAAGAACTGGGTGCG---AAG 1542
|||.|..|.|| |..|.||| ||||||||||||.| ..|| |||
BPUM_2551___p 1495 GATATAAAGCGCCTAGAGAAC--ATGGGTGAAGAATT---AACGAAAAAG 1539
BSNT_04247___ 1543 CTGAAGGAATATGAAGAAAAAATCCA----TGAGATTGCGGGAGAGCCGT 1588
||.||.|||||||||||||..||.|| | |.||.|||||..|||
BPUM_2551___p 1540 CTCAAAGAATATGAAGAAACCATTCACCGTT----TAGCAGGAGAAACGT 1585
BSNT_04247___ 1589 TTAACATCAATTCTCCGAAACAGCTAGGCGTCA-TCTTATTTGAAAAGAT 1637
||||.|||||||||||.||||||||.||||||| |||| ||||||||..|
BPUM_2551___p 1586 TTAATATCAATTCTCCTAAACAGCTTGGCGTCATTCTT-TTTGAAAAATT 1634
BSNT_04247___ 1638 CGGCCTTCCTGTCGTAAAGAAAACGAAAACAGGCTATTCTACGTCTGCCG 1687
.||.||.||..|..|.|||||.||.||||||||||||||.||||||||.|
BPUM_2551___p 1635 AGGTCTCCCGATTATTAAGAAGACAAAAACAGGCTATTCAACGTCTGCAG 1684
BSNT_04247___ 1688 ATGTGCTTGAAAAGCTGGCTGACAAGCATGATAT-----TGTCGACTATA 1732
||||||||||||||||.|..||.||||||||.|| .||| .|
BPUM_2551___p 1685 ATGTGCTTGAAAAGCTTGAAGATAAGCATGAAATCATTCGGTC-----CA 1729
BSNT_04247___ 1733 TTTTACAGTACAGACAAATTGGCAAGCTTCAATCAACATATATCGAAGGG 1782
||.|.||.||||||||||||||.|||||.|||||.||.|||.|.||||||
BPUM_2551___p 1730 TTCTGCACTACAGACAAATTGGAAAGCTGCAATCGACCTATGTAGAAGGG 1779
BSNT_04247___ 1783 CTTTTAAAGGTGACGAGACCGGATTCGCATAAAGTGCACACGCGATTTAA 1832
.|..|.||.||.|||.|...||||.|.|||||||||||.||..|||||||
BPUM_2551___p 1780 TTAATGAAAGTAACGCGTAAGGATACTCATAAAGTGCATACAAGATTTAA 1829
BSNT_04247___ 1833 CCAGGCCTTAACGCAAACTGGCCGTCTCAGCTCGACTGATCCGAACCTGC 1882
||||||..|.||||||||.||..|..|.|||||.||.|||||.|||||.|
BPUM_2551___p 1830 CCAGGCACTCACGCAAACAGGAAGATTAAGCTCCACAGATCCAAACCTTC 1879
BSNT_04247___ 1883 AAAACATTCCGATCAGGCTTGAGGAAGGGCGGAAAATTCGCCAAGCTTTT 1932
|||||||.|||||..|..|.||.|||||.|||||.|||||.|||||.||.
BPUM_2551___p 1880 AAAACATCCCGATTCGTTTAGAAGAAGGACGGAAGATTCGTCAAGCGTTC 1929
BSNT_04247___ 1933 GTGCCGTCTGAAAAAGACTGGCTCATTTTTGCAGCCGATTATTCACAAAT 1982
||.||.||..||.|||.|||||||||.||||||||.||.|||||||||||
BPUM_2551___p 1930 GTTCCTTCAAAAGAAGGCTGGCTCATGTTTGCAGCAGACTATTCACAAAT 1979
BSNT_04247___ 1983 CGAGCTGCGGGTGCTTGCCCATATTTCAAAGGATGAAAATCTGATCGAAG 2032
|||.|||||.||.|||||.|||||||||.|.|||||.|||.||||.||||
BPUM_2551___p 1980 CGAACTGCGTGTACTTGCTCATATTTCACAAGATGAGAATTTGATTGAAG 2029
BSNT_04247___ 2033 CTTTTACAAATGATATGGATATTCACACGAAAACGGCAATGGATGTGTTC 2082
|.|||||.|..||.|||||.||||||||||||||.||.|||||.|||||.
BPUM_2551___p 2030 CATTTACGAGGGACATGGACATTCACACGAAAACAGCGATGGACGTGTTT 2079
BSNT_04247___ 2083 CATGTCGCTAAGGATGAAGTGACATCTGCGATGAGACGCCAGGCGAAAGC 2132
||||||.|..|.||.|||||.||.||.|||||||||.|.||.||.||.||
BPUM_2551___p 2080 CATGTCTCAGAAGAAGAAGTAACTTCCGCGATGAGAAGACAAGCCAAGGC 2129
BSNT_04247___ 2133 GGTCAACTTTGGGATTGTTTACGGGATCAGCGATTACGGTCTGTCACAGA 2182
.||.||||||||.|||||.|||||.|||||.||||||||.||.||.||.|
BPUM_2551___p 2130 AGTAAACTTTGGTATTGTATACGGAATCAGTGATTACGGACTTTCTCAAA 2179
BSNT_04247___ 2183 ACCTCGGCATTACCCGGAAGGAAGCAGGAGCATTTATCGACCGCTATCTG 2232
||||.||.||.||..|.||.|||||||..|||||||||||.||||||.|.
BPUM_2551___p 2180 ACCTTGGAATCACAAGAAAAGAAGCAGCCGCATTTATCGAGCGCTATTTA 2229
BSNT_04247___ 2233 GAAAGCTTCCAAGGCGTAAAAGCGTACATGGAAG-ATTCAGTACAGGAAG 2281
..|||.||..|||||||.|||.|.||.||||||| |.|| ||.|||||||
BPUM_2551___p 2230 ACAAGTTTTAAAGGCGTGAAAACCTATATGGAAGAAATC-GTTCAGGAAG 2278
BSNT_04247___ 2282 CGAAACAAAAAGGATACGTAACAACGCTTATGCATCGCCGCCGCTACATC 2331
|||||||||||||.|||||.||.||||||.|..|.|||.|.||.||.|||
BPUM_2551___p 2279 CGAAACAAAAAGGCTACGTCACGACGCTTCTTAAACGCAGACGGTATATC 2328
BSNT_04247___ 2332 CCTGAGCTGACGAGCCGGAACTTTAATATCCGAAGTTTTGCGGAGCGGAC 2381
||.||..|.||.|||||.||.|||||||||..|||.|||||.||.||.||
BPUM_2551___p 2329 CCGGACATCACAAGCCGTAATTTTAATATCAAAAGCTTTGCAGAACGAAC 2378
BSNT_04247___ 2382 GGCCATGAATACGCCGATTCAAGGAAGCGCCGCTGATATTATCAAAAAAG 2431
.||.|||||.||.|||||.|||||.||.||.||.||||||||.|||||||
BPUM_2551___p 2379 AGCTATGAACACACCGATCCAAGGCAGTGCAGCCGATATTATTAAAAAAG 2428
BSNT_04247___ 2432 CCATGATTGACATGGCTGCCAA-GCTGAAAGAAAAACAGTTGAAAGCAAG 2480
|.||||||||.||||| .|.|| |||.||||||.||.|..||.||.|||.
BPUM_2551___p 2429 CGATGATTGATATGGC-ACGAAGGCTCAAAGAAGAAAAACTGCAAACAAA 2477
BSNT_04247___ 2481 GCTTCTACTTCAAGTACACGATGAATTGATTTTTGAGGCGCCAAAGGAAG 2530
.|||.||.|.||.||.||||||||||||||.||.||.||||||||.||||
BPUM_2551___p 2478 TCTTTTATTACAGGTGCACGATGAATTGATCTTCGAAGCGCCAAAAGAAG 2527
BSNT_04247___ 2531 AAATTGAAATTCTTGAAAAGCTTGTTCCTGAAGTGATGGAGCATGCGCTT 2580
||||||..||||||||||||.|||||||||||||.|||||..||||.|||
BPUM_2551___p 2528 AAATTGCCATTCTTGAAAAGATTGTTCCTGAAGTCATGGAAAATGCACTT 2577
BSNT_04247___ 2581 --GCATTAGATGTGCCGTTAAAGGTGGACTTTGCATCAGGCCCATCTTGG 2628
|| |.|||||||||.||||.||.||.|||||.|||||.|||||||||
BPUM_2551___p 2578 CAGC--TTGATGTGCCGCTAAAAGTTGATTTTGCTTCAGGTCCATCTTGG 2625
BSNT_04247___ 2629 TACGATGCGAAATAA 2643
|||||.|||||||||
BPUM_2551___p 2626 TACGACGCGAAATAA 2640
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