Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04246 and BPUM_2550

See Amino acid alignment / Visit BSNT_04246 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:46
# Commandline: needle
#    -asequence dna-align/BSNT_04246___mutM.1.24716.seq
#    -bsequence dna-align/BPUM_2550___mutM.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04246___mutM-BPUM_2550___mutM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04246___mutM-BPUM_2550___mutM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04246___mutM
# 2: BPUM_2550___mutM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 881
# Identity:     583/881 (66.2%)
# Similarity:   583/881 (66.2%)
# Gaps:          94/881 (10.7%)
# Score: 1894.0
# 
#
#=======================================

BSNT_04246___      1 ATGGATGTGCCGGAATTACCAGAGGTTGAGACGGTCCGGCGCACTCTGAC     50
                           .||||||||||||||||.|||||.||.||||||||||||||.|.
BPUM_2550___m      1 ------ATGCCGGAATTACCAGAAGTTGAAACCGTCCGGCGCACTCTCAA     44

BSNT_04246___     51 CGGGCTTGTAAAGGGAAAAACAATCAAATCGGTAGAGATCAGATGGCCGA    100
                     ..||.|.||..|.|||||.||.||..||.||||.||.||||.||||||.|
BPUM_2550___m     45 GCGGTTAGTCGAAGGAAAGACGATTGAAACGGTCGATATCAAATGGCCAA     94

BSNT_04246___    101 ATATCATCAAACGGCCTGCCGAACCGGAGGAATTTGCGCGAAAACTAGCA    150
                     |.|||||||||||.||||..||.|||||.||.||.||..|||.|.|.|..
BPUM_2550___m     95 ACATCATCAAACGTCCTGGGGAGCCGGAAGAGTTCGCAAGAAGAATGGTT    144

BSNT_04246___    151 GGAGAAACGATACAGTCCATCGGAAGACGGGGAAAGTTTTTACTGTTTCA    200
                     ||||||||.|||||..||||.|.||||.|.||.|||||..|.||.|||||
BPUM_2550___m    145 GGAGAAACCATACAAACCATTGAAAGAAGAGGGAAGTTCCTCCTCTTTCA    194

BSNT_04246___    201 TTTAGATCATTATGTTATGGTTTCTCACCTTCGAATGGAAGGAAAATACG    250
                     ||||||.||||||||.|||||.||.||..|..|.||||||||.|||||..
BPUM_2550___m    195 TTTAGACCATTATGTGATGGTCTCCCATTTAAGGATGGAAGGGAAATATC    244

BSNT_04246___    251 GTCTTCATCAAGCCGAGGAGCCTGACGATAAACACGTGCATGTCATATTC    300
                     ||.|.|||.||||..|.||.|||.|.|||||||||||.||.|||.|.||.
BPUM_2550___m    245 GTGTACATGAAGCGCATGAACCTTATGATAAACACGTACACGTCGTCTTT    294

BSNT_04246___    301 ACGATGACGGATGGAACCCAGCTCCGGTA-CAGGGATGTGCGGAAATTTG    349
                     |||.|.||.|||||.||..||||.||||| || .|||||.||.|||||||
BPUM_2550___m    295 ACGTTTACAGATGGGACAGAGCTTCGGTATCA-TGATGTACGTAAATTTG    343

BSNT_04246___    350 GAACCATGCACTTATTTAAACCGGGAGAAG-----AAGCGGGCGAGCTCC    394
                     |.||.|||||.||||||.|.|||||.||||     |||     ||.||||
BPUM_2550___m    344 GCACGATGCATTTATTTCAGCCGGGTGAAGAGGAAAAG-----GAACTCC    388

BSNT_04246___    395 CGCTTTCTCAGTTAGGTCCGGAGCCGGATGCAGAAGAATTTACAAGTGCG    444
                     |.||.||.|||.|.||....||.||...||..|||.|.||.||...||.|
BPUM_2550___m    389 CACTATCACAGCTGGGCTATGAACCATTTGATGAACAGTTCACTCCTGAG    438

BSNT_04246___    445 TATTTA------------AAAGAACGGCTTGCGAAAACAAACCGCGCTGT    482
                     ||||||            |||            |||||||..||.|..||
BPUM_2550___m    439 TATTTATGGGAGCAATTGAAA------------AAAACAACACGTGTCGT    476

BSNT_04246___    483 CAAAACTGCCCTACTGGATCAAAAAACGGTAGTTGGACTCGGGAACATTT    532
                     ||||||.||.||.||.||||||||.|..||.||.||.||.||.|||||||
BPUM_2550___m    477 CAAAACAGCACTGCTTGATCAAAAGATTGTCGTAGGGCTTGGTAACATTT    526

BSNT_04246___    533 ATGTGGATGAGGCTCTTTTCAGAGCAGGTGTCCATCCCGAGACAAAAGCA    582
                     |.||.|||||||..||.||.|.|.||||..|.|||||.||.||.|||||.
BPUM_2550___m    527 ACGTAGATGAGGTCCTGTTTAAATCAGGGATTCATCCAGAAACGAAAGCG    576

BSNT_04246___    583 AATCA-ATTATCAGATAAAAC---AAT----CAAAACCCTTCACGCTGGA    624
                     ||||| .|||.|        |   |||    ||||...||||||     |
BPUM_2550___m    577 AATCAGCTTAGC--------CTGGAATCCTGCAAAGTGCTTCAC-----A    613

BSNT_04246___    625 -----ATCAAAAACACTCTGCAGGAGGCGATTGATGCGGGCGGAAGCACA    669
                          ||||...|.||.||.||.|.||||.|.||||||||.|||||.||.
BPUM_2550___m    614 AACAGATCATCGATACGCTTCAAGTGGCGGTAGATGCGGGTGGAAGTACG    663

BSNT_04246___    670 GTCCGTTCATATATCAACTCCCAAGGGGAAATCGGAATGTTCCAGCTGCA    719
                     .|.|||||.|||||||||||.|||||.||.||.||.|.|||.||..||||
BPUM_2550___m    664 ATTCGTTCTTATATCAACTCACAAGGAGATATTGGTACGTTTCAATTGCA    713

BSNT_04246___    720 GCATTTTGTGTA-------CGGAAAAAAAGACGAGCCATGCAAAAATTGC    762
                     ||.|.||||.||       |||       |..|||||.|||.|||..|||
BPUM_2550___m    714 GCTTCTTGTATATGACCGGCGG-------GGAGAGCCTTGCCAAACATGC    756

BSNT_04246___    763 GGAACGATGATTTCGAAAATTGTCGTTGGAGGAAGAGGCACGCATTTTTG    812
                     ||||..||.|||..|||||..||.||.|||||..|.||.||.||.|||||
BPUM_2550___m    757 GGAAGCATCATTGAGAAAACAGTAGTCGGAGGGCGCGGTACACACTTTTG    806

BSNT_04246___    813 CGCAAAGTG-CCAGACAAAAAAGT-----AG    837
                          .||| ||.|.||||||.||     | 
BPUM_2550___m    807 -----TGTGACCTGCCAAAAACGTCCTTAA-    831


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04246 and BPUM_2550

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
