Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04234 and BPUM_2543
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:45
# Commandline: needle
# -asequence dna-align/BSNT_04234___dnaB.1.24716.seq
# -bsequence dna-align/BPUM_2543___dnaB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04234___dnaB-BPUM_2543___dnaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04234___dnaB-BPUM_2543___dnaB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04234___dnaB
# 2: BPUM_2543___dnaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1547
# Identity: 956/1547 (61.8%)
# Similarity: 956/1547 (61.8%)
# Gaps: 250/1547 (16.2%)
# Score: 2645.0
#
#
#=======================================
BSNT_04234___ 1 ATGGCTGACTATTGGAAAGATGTACT-GCCTGTAGACCCGTATGTGGTTA 49
|||.|.||..|||||||.||.||.|| ||| ||.||.||.|||||.||.|
BPUM_2543___d 1 ATGACAGAGCATTGGAAGGAAGTGCTAGCC-GTCGATCCATATGTCGTCA 49
BSNT_04234___ 50 AAAGCAGATCGATGCTGCAG-GATATTGACAGACAAATTATTACACAACT 98
|||||...||..|||| |.| ||.||.||.|||||..|.||.||.|...|
BPUM_2543___d 50 AAAGCGCTTCATTGCT-CGGTGACATCGATAGACAGCTCATCACTCTTTT 98
BSNT_04234___ 99 GTACCAGCC-CTTA-----ATCGGCCCTGTTGCATTCTCTCTT-TATATG 141
.||.||||| |||| || |.||..||.|| .||| ||||||
BPUM_2543___d 99 ATATCAGCCGCTTATAGGTAT--GTCCGCTTTCA-----GCTTATATATG 141
BSNT_04234___ 142 ACATTGTGGGGAGAGCTTGAACAAAACCGTCTGTGGGGCGGAGAGTCCAC 191
||..|||||||||||||.||||||||.|||.|||||| ||| |..||.|
BPUM_2543___d 142 ACGCTGTGGGGAGAGCTGGAACAAAATCGTATGTGGG--GGA-AACCCGC 188
BSNT_04234___ 192 A---CATAGACAGCTGATGGGGATGACACAGTCCAACTTAAAAACGATCC 238
| |||.|.|||||.||||..|||...||..|.||.|| .||.|||..
BPUM_2543___d 189 ACCTCATCGGCAGCTCATGGTCATGCTGCAAACGAATTT--GAATGATAT 236
BSNT_04234___ 239 A--TCAGGAACAGGGG----AAGCTCGAGGGCATCGGATTGCTGAAAGTA 282
| |.|||||| | |||||.||.|..||.||.||.|| ..|.|
BPUM_2543___d 237 ATTTGAGGAAC----GTTTAAAGCTTGAAGCGATTGGTTTACT--CCGCA 280
BSNT_04234___ 283 TATATGAA-AGAATCCGAGCGGCAGGAGCGC---CTCTTTATATATGAAC 328
.||||||| ||.| |.|||.||.|| || ||.||||.||||||.|
BPUM_2543___d 281 CATATGAACAGGA----AACGGAAGAAG-GCAGACTGTTTACATATGAGC 325
BSNT_04234___ 329 TCCTTCCGCCGCTCAGACCAAATGAATTTTTTGAAGACGGAATGCTGAAT 378
|..|.||||||||.||||||.||||.|||||..||||.||||||.|||||
BPUM_2543___d 326 TTGTGCCGCCGCTAAGACCAGATGAGTTTTTCCAAGATGGAATGTTGAAT 375
BSNT_04234___ 379 GTTTTTCTGTATAATAGAGTCGGAAAAACGAAATATCAGCA--------A 420
||..|.|||||..||.|.||.|..|||.||||||||..||| |
BPUM_2543___d 376 GTCCTGCTGTACCATCGTGTAGAGAAAGCGAAATATATGCAGCTTCGCGA 425
BSNT_04234___ 421 TTAAAACAATTTTTTACGCA-CCCGGCTATTTCAGAAGATGCGAAGGACA 469
||| |||..||.| ||||| |.||.|.|.|||.||.|||.|||
BPUM_2543___d 426 TTA--------TTTCTCGTATCCCGG-TGTTCCGGCAGAGGCAAAGAACA 466
BSNT_04234___ 470 TTACGCGGCCGTTTAATCACGCGTTT---GAATCGCTGCAGCCGAGTGAA 516
|..|||||.|||||.|..|.|..||| |.|| |||||||..|||||
BPUM_2543___d 467 TCTCGCGGTCGTTTGAAGAAGTCTTTCACGTAT---TGCAGCCAGGTGAA 513
BSNT_04234___ 517 TGGAAGCTCACATCTGATATGGAGGAAA---------CGGTAAGACTTG- 556
.|.|.|.|.||| ||.|||| ||..|..|||||
BPUM_2543___d 514 CGCAGGATGACA---------GAAGAAATCAATCAGGCGTCATCACTTGA 554
BSNT_04234___ 557 CCGAGG-------------------GGACCGAGTATACTTCTGTCGGACA 587
.|.||| |||.|||| ||.|.|||
BPUM_2543___d 555 TCAAGGCTATGAATATGTGACCGTTGGATCGAG------TCAGCCGG--- 595
BSNT_04234___ 588 GTCTCCGTCCTACACCATAACGGAGGATGTGTTTGATTTTGATTTGTTTT 637
|||||..|| |.||.|||...||||||||.|||.|.||.|
BPUM_2543___d 596 --CTCCGCTCT---------CAGACGATTCCTTTGATTTCGATCTATTGT 634
BSNT_04234___ 638 TAGCGGGACTTTCTGAGACGATGATACCGAGAAAAGCGATGACCCAGCAG 687
|||||||..|.|||||.|.||||||.||.|||||.||..||||..|||||
BPUM_2543___d 635 TAGCGGGTATGTCTGATATGATGATTCCAAGAAAGGCTTTGACAAAGCAG 684
BSNT_04234___ 688 GTGCGGGACACAATCAAAAAGCTTTCTTA-----TCTGTACGGAATTGAC 732
|||...||.||.||.||.||| ||| |.|.|||||.||...|
BPUM_2543___d 685 GTGAAAGAAACCATTAAGAAG-----TTAGCCGTTGTATACGGCATCACC 729
BSNT_04234___ 733 CCTTTGCAAATGCAAAAT-------------------GTTGTGATGAGCG 763
||..|.|||||||||||| |||.||||
BPUM_2543___d 730 CCGCTTCAAATGCAAAATATTGTAGCAGGCGCCTGCGGTTCTGAT----- 774
BSNT_04234___ 764 CAATTGATGAGCGTGACGTCATTACGACGGAGGCATTAAGAAAAGCGGCG 813
|||.|||| .||| ||.||.|.|||.|||||||||||.
BPUM_2543___d 775 CAAATGAT---------CTCA-----ACAGAAGAATTGAGAAAAGCGGCA 810
BSNT_04234___ 814 AGCGACTGGTATCAAATTGAA---AGAAACGGACAGCTGCCCGATTTGGT 860
||.||||||||.||||||||| ||| ||..|||.|||..|..|..|
BPUM_2543___d 811 AGAGACTGGTACCAAATTGAATATAGA---GGCGAGCAGCCAAAACTCAT 857
BSNT_04234___ 861 GGAAAAAACACAGCCGGTGCATCTGCGTGAAG--GCGAAAAA----CCGG 904
.||..|||.|||||||...||..|||||.||| ||...||| |||.
BPUM_2543___d 858 TGATCAAAAACAGCCGAGACACTTGCGTCAAGATGCTTCAAAGTCGCCGT 907
BSNT_04234___ 905 CAGAAGACGATTCTCTGGATGGGAAGCTGATTGCATTGCTGGAGGCGATT 954
.||.| |||.|.|..||||..||.|||||||.|..|||.||....|||
BPUM_2543___d 908 TAGCA---GATACGCCTGATGCAAAACTGATTGAAAAGCTTGACCACATT 954
BSNT_04234___ 955 TCCCCGAAGAAGCTTCTGCAGGACATTGCTGACGGAACAGAGCCGTCAAA 1004
||.||.|.|.|.||.||..|.||.||.|||||.||.|..|||||..|..|
BPUM_2543___d 955 TCGCCTAGGGAACTGCTAAAAGATATGGCTGATGGCATTGAGCCAACGTA 1004
BSNT_04234___ 1005 AGCTGATCTGAAG-ATCATAGAAGAAATTATGTTCGAACAGAAGCTCGAG 1053
.||||| ||.||| ||..|.||.||.||||||.|.||.|||.||||.|||
BPUM_2543___d 1005 TGCTGA-CTTAAGAATTGTCGAGGATATTATGCTTGAGCAGCAGCTAGAG 1053
BSNT_04234___ 1054 CCAGGCGTCACAAATGTGTTAATTTATTATGTCA-TGCTGAAAACCGACA 1102
|||||.||||..|||||.||.||.||.||| .|| ||||||||||.||.|
BPUM_2543___d 1054 CCAGGGGTCATGAATGTTTTGATCTACTAT-ACATTGCTGAAAACAGATA 1102
BSNT_04234___ 1103 TGAAGCTGTCCAAAAACTATATCCAAAAAATCGCTTCGCATTGGGCACGC 1152
||||||||||.||||..|||||.||||||||.||..|.|||||||...|.
BPUM_2543___d 1103 TGAAGCTGTCGAAAACATATATGCAAAAAATTGCCGCTCATTGGGTGAGA 1152
BSNT_04234___ 1153 AAAAAGGTAAAAACGGTCAGG--GAAGCGATGAAGCTCGCAATAGAAGAA 1200
||.||..|.|||||.|| || |.|||.|||||..|.||.|.||||||.
BPUM_2543___d 1153 AAGAAAATTAAAACTGT--GGCAGCAGCCATGAAAATTGCCAAAGAAGAG 1200
BSNT_04234___ 1201 AACCGCCAGTAT--CTTGAATGGGCTGAAGGAAAAACAAAGTCTTCG--- 1245
||..|.|| .|| | .|||||||| |.||.|.|| |||| |..||
BPUM_2543___d 1201 AATAGGCA-AATGAC-AGAATGGGC-GCAGCAGAA--AAAG-CAGCGCAG 1244
BSNT_04234___ 1246 ---AAACGAAACCAA---AAAGTGATTCGTGAAGAAAAGCTTCCTGATTG 1289
|.|||.|.| | |||||..||||||||||.|||||||||||.||
BPUM_2543___d 1245 CACATACGGATC--AGGGAAAGTTGTTCGTGAAGAGAAGCTTCCTGACTG 1292
BSNT_04234___ 1290 GATGACAGAAAAGGAAACAGCGTCTGATTCAGAATCCGGACAGCAGAAG- 1338
|||||.|||||..||||| || .|||| |.|.|||||.|||
BPUM_2543___d 1293 GATGAAAGAAACCGAAAC-------GA--AAGAA--CAGCCAGCAAAAGA 1331
BSNT_04234___ 1339 -------------CTGCATCCGCAG--GATTTGGAA-GAACAGAAGAAAA 1372
|| |||..||| |||.|.||| ||..|.|||||||
BPUM_2543___d 1332 ACAAACAGACAGTCT--ATCGACAGAAGATCTCGAACGAGAAAAAGAAAA 1379
BSNT_04234___ 1373 AGATGATGGAAGAAATGCAAAAACTGAAAAAATACTCTGCCTATTAA 1419
| .||.|.||..|..|..||||..|||||||.|||..|||..|||||
BPUM_2543___d 1380 A-CTGTTAGATCAGTTTAAAAATATGAAAAAGTACAATGCACATTAA 1425
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