Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04229 and BPUM_2541
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:45
# Commandline: needle
# -asequence dna-align/BSNT_04229___ytxB.1.24716.seq
# -bsequence dna-align/BPUM_2541___ytxB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04229___ytxB-BPUM_2541___ytxB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04229___ytxB-BPUM_2541___ytxB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04229___ytxB
# 2: BPUM_2541___ytxB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 730
# Identity: 409/730 (56.0%)
# Similarity: 409/730 (56.0%)
# Gaps: 179/730 (24.5%)
# Score: 893.5
#
#
#=======================================
BSNT_04229___ 1 ATGAAACGAAAAACGGCTGTCAAATGGCTGGCA---------GTGCTTGC 41
||| |||.|||.| |||||||| | |||.||||
BPUM_2541___y 1 ATG-AACAAAAGA--------AAATGGCT---ACTTTTTCTCGTGATTGC 38
BSNT_04229___ 42 AGGT---GCTGGTTTACTCTATTGGGGAAACAAAACGTATTTGAATGTAT 88
|||| ||||.||||||.|..|||...||||||..|.||.|..|..|..
BPUM_2541___y 39 AGGTCTCGCTGTTTTACTTTGGTGGCTGAACAAACAGCATCTTCAGCTGG 88
BSNT_04229___ 89 CGCCGAAAGA-------AATCAGGGTATGGGTATTGTCGTTCGGAGTCTT 131
|||||||||| ||| |||||..|....||.|||.|..|
BPUM_2541___y 89 CGCCGAAAGATGTGAAGAAT-------TGGGTGCTACAATTTGGACTGCT 131
BSNT_04229___ 132 TGCACCTCTGATGTTTATCGG--GATATC-CATCGTCAGGCCACTTGTTT 178
.||.||..| |||||.||.| ..|||| |.|..|| |.||..|||||.
BPUM_2541___y 132 GGCTCCCTT--TGTTTTTCTGTTCTTATCTCTTTTTC-GCCCGTTTGTTC 178
BSNT_04229___ 179 TATTTCCGGT----GTCTGTTATTTCAATAGCTGGCGGACTTGC--GTTT 222
|..|.|||.| |||| |||| |||||| .|| ||||
BPUM_2541___y 179 TTGTCCCGCTTACGGTCT----TTTC----GCTGGC-----AGCAGGTTT 215
BSNT_04229___ 223 GGCCCGC-------TTCTCGGCACGCTTTATACGTTATTCGGT----TCG 261
||||..| ||||.||.|||.|||||.|..|..||||| .||
BPUM_2541___y 216 GGCCTTCGGAAGTGTTCTTGGGACGATTTATGCCCTCGTCGGTGCAACCG 265
BSNT_04229___ 262 ATGTGCGC-TTCAGCTGTTTC--GTTTTTTGCGGCCGGTTTGTTTTCG-G 307
..| |||| ||..|||..||| |.||..|.|..|| ||||| .
BPUM_2541___y 266 CCG-GCGCATTAGGCTCCTTCCTGCTTGCTACAACC-------TTTCGTT 307
BSNT_04229___ 308 CGAAAAAGAACGGGCATTAC-GA---AAG--GCTTGAAGC---------- 341
|.|||||||| ||.| || || ||| ||..|||||
BPUM_2541___y 308 CCAAAAAGAA--GGAA--ACAGAATCAAGCAGCCGGAAGCTGAGAGCGGT 353
BSNT_04229___ 342 ---------CATACAGAAGCAAATGGAGGATAACGGATTTTTCTATATCT 382
|||.|||.||| |.||.|||.|.||.|| |
BPUM_2541___y 354 GACATCCCGCATTCAGGAGC------------ATGGGTTTCTTTACAT-T 390
BSNT_04229___ 383 TTCTT-TTGAGAATCCTG--CCGATCAATTTTGATTTCGTCAGCTATGCG 429
||.|| |||.|.|| || ||.|||.|||||||.||.||||||||||||
BPUM_2541___y 391 TTGTTATTGCGTAT--TGCCCCCATCCATTTTGACTTTGTCAGCTATGCG 438
BSNT_04229___ 430 GCAG--GCCTTTCCAATGTCAA--AGCGCTGCCGTATTTTGCGGCA---A 472
|||| || |||...||..|| |.|| ||| .|||.||||| |
BPUM_2541___y 439 GCAGCAGC--TTCACGTGCGAATTATCG-TGC----ATTTACGGCAGCTA 481
BSNT_04229___ 473 CGGCTGTGGGAATCATCCCTGGGACGATTGCGCTT-AATGTGCTGGGTGC 521
|...|.|.||..|.||.||.||.|| |.||..||| |||||.||.|||.|
BPUM_2541___y 482 CCTTTTTAGGTTTAATACCGGGTAC-AGTGGCCTTAAATGTCCTTGGTTC 530
BSNT_04229___ 522 GAGCTTT-TTGGCTGGCAA-TCTGCCCGCTT-----TCTTTATGGTGCTC 564
.|||||| |..|| ||||| |.||||..||| ||.|| ||.|.
BPUM_2541___y 531 TAGCTTTGTCAGC-GGCAATTATGCCGCCTTAGCAATCGTT----TGTTT 575
BSNT_04229___ 565 GCTTTGTATATCGTGTTTATCTCACTGCCGTTCATCTTC-AGAAAGAAA- 612
|.|| |||.||.|.|||||||||.|.|||.|| .||| |.|||||||
BPUM_2541___y 576 GATT--TATCTCATCTTTATCTCAGTTCCGCTC--GTTCTAAAAAGAAAG 621
BSNT_04229___ 613 ATGCAAAACTTGTTCCAAGAATCAAATTAA 642
|.||...|.||.|| |||.
BPUM_2541___y 622 AGGCCTGATTTATT------------TTAG 639
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