Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04208 and BPUM_2528
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:44
# Commandline: needle
# -asequence dna-align/BSNT_04208___ysdB.1.24716.seq
# -bsequence dna-align/BPUM_2528___ysdB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04208___ysdB-BPUM_2528___ysdB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04208___ysdB-BPUM_2528___ysdB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04208___ysdB
# 2: BPUM_2528___ysdB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 424
# Identity: 286/424 (67.5%)
# Similarity: 286/424 (67.5%)
# Gaps: 50/424 (11.8%)
# Score: 872.5
#
#
#=======================================
BSNT_04208___ 1 ATGTTTGTCATGGTTCTAAGGATTA--TTTTGCTTGCACTTTTTG----C 44
||||||||.||..|..|.| ||.|| |.||| |||||||..||| |
BPUM_2528___y 1 ATGTTTGTAATCCTCATTA-GACTAGCTCTTG-TTGCACTGCTTGTCTAC 48
BSNT_04208___ 45 TTATTGTATTTATGCCGTGGTCAAATATGTCGCGAATCCTAAGAGAAGGC 94
.|.||.|| .||| |.|||.||||...||.|.|||||.|..||||.||
BPUM_2528___y 49 ATCTTCTA--CATG--GCGGTAAAATTCTTCTCAAATCCGAGAAGAAAGC 94
BSNT_04208___ 95 TTAAGCTGGCCCAATCAAAAGAACATTTTTATATTATTGATGAACAAAAC 144
|.||.|..||.||||.|||||||...||||||.||||.||.||||||.|.
BPUM_2528___y 95 TGAAACAAGCACAATTAAAAGAAGGCTTTTATTTTATGGACGAACAACAA 144
BSNT_04208___ 145 AATACCCGGAAGAATTTTCAGCTGACG--TATAAAGGCGTGCTGTTTGAG 192
|||.|.||.||.||||||.| |..|| ||||||||.||..|||||||.
BPUM_2528___y 145 AATGCACGTAAAAATTTTAA--TTTCGTCTATAAAGGTGTCTTGTTTGAA 192
BSNT_04208___ 193 GGAGAAAAGCATATTCCTTCCAAGGATCATCCGCTGTTTATTCACACGAT 242
||.||.||||||.|||||||.|||||||||||.||||||.|.|||.|.||
BPUM_2528___y 193 GGGGAGAAGCATGTTCCTTCTAAGGATCATCCTCTGTTTGTCCACTCCAT 242
BSNT_04208___ 243 CTTTGTCTGGACAGAATCTCCTGAGAAGC----TGAA---ACATTTCTCT 285
.|..||.|||||.||.||.|||||||||| |||| |||||
BPUM_2528___y 243 TTACGTTTGGACGGAGTCACCTGAGAAGCTAAGTGAATTTACATT----- 287
BSNT_04208___ 286 GCAAAAGATTTTGAGAACATTGAAG--AAAAAGTACTGGAACGATATC-- 331
|.||||.||||| ||.||||.|| |||.|.|| |.|||||.||||
BPUM_2528___y 288 --AGAAGACTTTGA-AAAATTGGAGGAAAACATTA-TCGAACGTTATCCT 333
BSNT_04208___ 332 CAAATTGTAAGATTGACTGGGACCAGCCCATTAAA-----CTCGCAAAA- 375
|||| ..||.|||||.|||||.||.||||||||| |...|||||
BPUM_2528___y 334 CAAA--CAAAAATTGATTGGGATCAACCCATTAAAAAAATCAAACAAAAG 381
BSNT_04208___ 376 AAAGCAGAAGA------GCGTTAA 393
||||.||.||| |..||.|
BPUM_2528___y 382 AAAGGAGCAGATACGCCGTCTTGA 405
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