Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04206 and BPUM_2527
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:44
# Commandline: needle
# -asequence dna-align/BSNT_04206___ysdC.1.24716.seq
# -bsequence dna-align/BPUM_2527___ysdC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04206___ysdC-BPUM_2527___ysdC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04206___ysdC-BPUM_2527___ysdC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04206___ysdC
# 2: BPUM_2527___ysdC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1112
# Identity: 812/1112 (73.0%)
# Similarity: 812/1112 (73.0%)
# Gaps: 49/1112 ( 4.4%)
# Score: 2870.0
#
#
#=======================================
BSNT_04206___ 1 ATGGCAAAATTAGATGAAACATTGACCATGCTGAAAGATTTAACAGATGC 50
|||.||||..|||||.|||||||.||.|||||||||||..||||.|||||
BPUM_2527___y 1 ATGACAAAGCTAGATCAAACATTAACTATGCTGAAAGACCTAACGGATGC 50
BSNT_04206___ 51 AAAAGGCATACCGGGCAATGAAAGAGAAGTAAGGCAAGTGATGAAATCAT 100
||||||.||.||.||.||||||.|.||.||.|...||||.|||.|..|||
BPUM_2527___y 51 AAAAGGGATTCCAGGAAATGAACGTGATGTCAAAAAAGTCATGCAGACAT 100
BSNT_04206___ 101 ACATAGAACCATTTGCTGATGAGGTGACAACAGATCGCCTGGGCAGTTTA 150
||||||.|.|||.|||.|||||.||..|.|..||.|||||.|||||.|||
BPUM_2527___y 101 ACATAGGATCATATGCAGATGAAGTCTCTAGTGACCGCCTTGGCAGCTTA 150
BSNT_04206___ 151 ATTGCCAAAA-------AAACTGGTGCAGAAAACGGCCCGAAAATTATGA 193
||.||.||.| |||| |.||||||.||.|||||||||.
BPUM_2527___y 151 ATCGCTAAGAAGGAAGGAAAC-------GCAAACGGACCTAAAATTATGC 193
BSNT_04206___ 194 TCGCCGGACATTTGGATGAAGTCGGCTTTATGGTGACACAAATCACAGAT 243
|.||.||.||.||||||||||||||.||.|||||||||.||||....||.
BPUM_2527___y 194 TTGCTGGTCACTTGGATGAAGTCGGATTCATGGTGACAAAAATTGATGAC 243
BSNT_04206___ 244 AAAGGCTTTATCCGTTTTCAAACCGTTGGCGGCTGGTGGGCTCAGGTTAT 293
|||||||..||.|||||.|||||.||.||.||.||||||.|.|||||.||
BPUM_2527___y 244 AAAGGCTACATTCGTTTCCAAACTGTCGGTGGATGGTGGTCACAGGTCAT 293
BSNT_04206___ 294 GCTTGCCCAGCGCGTCACCATCGTCACAAAAAAAGGAGAAATCACTGGGG 343
|||.||.|||||.||||||||.||.||.|||||.|||||.||.||.||||
BPUM_2527___y 294 GCTCGCGCAGCGTGTCACCATTGTAACGAAAAAGGGAGACATTACAGGGG 343
BSNT_04206___ 344 TTATCGGCTCTAAGCCGCCGCATATTTTATCTCCTGAAGCAAGAAAAAAA 393
|.||.|||||.||||||||.||..|.||.||.|||||||||.|||||||.
BPUM_2527___y 344 TGATTGGCTCAAAGCCGCCACACGTCTTGTCACCTGAAGCACGAAAAAAG 393
BSNT_04206___ 394 TCAGTGGAAATAAAAGACATGTTTATTGATATTGGAGCTTCAAGCCGGGA 443
||..|.||.||.|||||.||||||||||||||.||.||.||||||...||
BPUM_2527___y 394 TCGATTGAGATTAAAGATATGTTTATTGATATCGGTGCATCAAGCAAAGA 443
BSNT_04206___ 444 AGAAGCCTTGGAGTGGGGTATACTCCCGGGAGATATGATCGTTCCGCATT 493
|.|.||..||||||||||..|.||.||.||||||...||||||||..|||
BPUM_2527___y 444 ACAGGCAATGGAGTGGGGCGTTCTGCCTGGAGATCAAATCGTTCCTTATT 493
BSNT_04206___ 494 TTGAATTTACGGTCATGAACAATGAAAAATTCCTACTCGCAAAGGCGTGG 543
||||.|||||.||.|||||..||||||||.|.||.||.|||||.||.|||
BPUM_2527___y 494 TTGAGTTTACAGTGATGAATGATGAAAAAATGCTCCTTGCAAAAGCATGG 543
BSNT_04206___ 544 GACAACCGCATTGGCTGTGCGATTGCAATTGATGT-GTTAAGAAACTTAC 592
||||||||.||.||||||||..|.||.|||||||| .|.||| |||||||
BPUM_2527___y 544 GACAACCGTATCGGCTGTGCAGTAGCGATTGATGTCATGAAG-AACTTAC 592
BSNT_04206___ 593 AAAACACAGATCATCCAAATATAGTGTATGGCGTCGGAACCGTGCAGGAG 642
|.||.||..|.|||...|||||.|..|||.|.||.|.|||.||.||.|||
BPUM_2527___y 593 ACAATACTCAGCATGAGAATATTGCTTATAGTGTTGCAACTGTACAAGAG 642
BSNT_04206___ 643 GAAGTCGGCCTGAGGGGAGCGAAAACGGCTGC----ACACACCATTCAGC 688
|||||.||||||.|.||.||.|||||.||.|| ||| |||||||
BPUM_2527___y 643 GAAGTTGGCCTGCGTGGTGCCAAAACAGCAGCGTCTACA----ATTCAGC 688
BSNT_04206___ 689 CTGATATTGCGTTTGGTGTTGATGTAGGGATAGCAGGAGACACGCCTGGC 738
|||||||||..||||...|||||||.||..||||||||||||||||.|||
BPUM_2527___y 689 CTGATATTGGATTTGCCATTGATGTTGGTGTAGCAGGAGACACGCCGGGC 738
BSNT_04206___ 739 ATTTCCGAGAAAGAAGCGCAGAGCAAAATGGGCAAAGGCCCGCAGATTAT 788
||..|.||.||||||||...|||||||.|.||||||||.|||..||||.|
BPUM_2527___y 739 ATCACTGAAAAAGAAGCAACGAGCAAACTTGGCAAAGGGCCGACGATTGT 788
BSNT_04206___ 789 CGTTTACGATGCATCCATGGTCTCTCACAAAGGTTTGCGCGATGCAGTTG 838
.||.|..|||||.||.|||||.|||||.|||||..|.||||||...||||
BPUM_2527___y 789 TGTATTTGATGCTTCGATGGTATCTCATAAAGGGCTTCGCGATTTTGTTG 838
BSNT_04206___ 839 TAGCC--ACTGCGGAGGAAGCCGGCATTCCGTACCAATTTGATGCCATTG 886
| || ||.|||||.|||.....|||.||.|||||||.||||.||| ||
BPUM_2527___y 839 T--CCAAACAGCGGATGAATTGAACATCCCTTACCAATATGATTCCA-TG 885
BSNT_04206___ 887 CC-GGCGGCGGAACTGATTCTGGTGCCATCCATTTGACGGCGAATGGTGT 935
|| ||||||||.||.|||.||||.|..||||||||.||.|...|||||||
BPUM_2527___y 886 CCTGGCGGCGGGACAGATGCTGGCGGTATCCATTTAACAGGTCATGGTGT 935
BSNT_04206___ 936 TCCTGCGCTGTCCAT-----TACCATTGCAACCCGCTACATTCATACGCA 980
.||..|.||.||.|| ||| |||.|.|.||.||.|||||.||
BPUM_2527___y 936 GCCATCACTATCGATCGGGATAC-----CAAGCAGATATATCCATACCCA 980
BSNT_04206___ 981 CGCGGCCATGCTGCATCGTGATGATTATGAAAACGCGGTAAAGTTAATTA 1030
.||.||.|||.|.||.||.||||||||||||||.||.||.|||.|..|.|
BPUM_2527___y 981 TGCTGCGATGATTCACCGAGATGATTATGAAAATGCAGTGAAGCTTTTAA 1030
BSNT_04206___ 1031 CAGAAGTCATTAAGAAG--TTAGACCGAAAAACGGTTGACGAAATTACGT 1078
|||||||.||.|| ||| || ||.|.||||||||||||..|.||.||||
BPUM_2527___y 1031 CAGAAGTGATCAA-AAGACTT-GATCAAAAAACGGTTGAGCAGATCACGT 1078
BSNT_04206___ 1079 AC----CAATAA 1086
|| | .|||
BPUM_2527___y 1079 ACGGTTC-TTAA 1089
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