Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04206 and BPUM_2527

See Amino acid alignment / Visit BSNT_04206 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:44
# Commandline: needle
#    -asequence dna-align/BSNT_04206___ysdC.1.24716.seq
#    -bsequence dna-align/BPUM_2527___ysdC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04206___ysdC-BPUM_2527___ysdC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04206___ysdC-BPUM_2527___ysdC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04206___ysdC
# 2: BPUM_2527___ysdC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1112
# Identity:     812/1112 (73.0%)
# Similarity:   812/1112 (73.0%)
# Gaps:          49/1112 ( 4.4%)
# Score: 2870.0
# 
#
#=======================================

BSNT_04206___      1 ATGGCAAAATTAGATGAAACATTGACCATGCTGAAAGATTTAACAGATGC     50
                     |||.||||..|||||.|||||||.||.|||||||||||..||||.|||||
BPUM_2527___y      1 ATGACAAAGCTAGATCAAACATTAACTATGCTGAAAGACCTAACGGATGC     50

BSNT_04206___     51 AAAAGGCATACCGGGCAATGAAAGAGAAGTAAGGCAAGTGATGAAATCAT    100
                     ||||||.||.||.||.||||||.|.||.||.|...||||.|||.|..|||
BPUM_2527___y     51 AAAAGGGATTCCAGGAAATGAACGTGATGTCAAAAAAGTCATGCAGACAT    100

BSNT_04206___    101 ACATAGAACCATTTGCTGATGAGGTGACAACAGATCGCCTGGGCAGTTTA    150
                     ||||||.|.|||.|||.|||||.||..|.|..||.|||||.|||||.|||
BPUM_2527___y    101 ACATAGGATCATATGCAGATGAAGTCTCTAGTGACCGCCTTGGCAGCTTA    150

BSNT_04206___    151 ATTGCCAAAA-------AAACTGGTGCAGAAAACGGCCCGAAAATTATGA    193
                     ||.||.||.|       ||||       |.||||||.||.|||||||||.
BPUM_2527___y    151 ATCGCTAAGAAGGAAGGAAAC-------GCAAACGGACCTAAAATTATGC    193

BSNT_04206___    194 TCGCCGGACATTTGGATGAAGTCGGCTTTATGGTGACACAAATCACAGAT    243
                     |.||.||.||.||||||||||||||.||.|||||||||.||||....||.
BPUM_2527___y    194 TTGCTGGTCACTTGGATGAAGTCGGATTCATGGTGACAAAAATTGATGAC    243

BSNT_04206___    244 AAAGGCTTTATCCGTTTTCAAACCGTTGGCGGCTGGTGGGCTCAGGTTAT    293
                     |||||||..||.|||||.|||||.||.||.||.||||||.|.|||||.||
BPUM_2527___y    244 AAAGGCTACATTCGTTTCCAAACTGTCGGTGGATGGTGGTCACAGGTCAT    293

BSNT_04206___    294 GCTTGCCCAGCGCGTCACCATCGTCACAAAAAAAGGAGAAATCACTGGGG    343
                     |||.||.|||||.||||||||.||.||.|||||.|||||.||.||.||||
BPUM_2527___y    294 GCTCGCGCAGCGTGTCACCATTGTAACGAAAAAGGGAGACATTACAGGGG    343

BSNT_04206___    344 TTATCGGCTCTAAGCCGCCGCATATTTTATCTCCTGAAGCAAGAAAAAAA    393
                     |.||.|||||.||||||||.||..|.||.||.|||||||||.|||||||.
BPUM_2527___y    344 TGATTGGCTCAAAGCCGCCACACGTCTTGTCACCTGAAGCACGAAAAAAG    393

BSNT_04206___    394 TCAGTGGAAATAAAAGACATGTTTATTGATATTGGAGCTTCAAGCCGGGA    443
                     ||..|.||.||.|||||.||||||||||||||.||.||.||||||...||
BPUM_2527___y    394 TCGATTGAGATTAAAGATATGTTTATTGATATCGGTGCATCAAGCAAAGA    443

BSNT_04206___    444 AGAAGCCTTGGAGTGGGGTATACTCCCGGGAGATATGATCGTTCCGCATT    493
                     |.|.||..||||||||||..|.||.||.||||||...||||||||..|||
BPUM_2527___y    444 ACAGGCAATGGAGTGGGGCGTTCTGCCTGGAGATCAAATCGTTCCTTATT    493

BSNT_04206___    494 TTGAATTTACGGTCATGAACAATGAAAAATTCCTACTCGCAAAGGCGTGG    543
                     ||||.|||||.||.|||||..||||||||.|.||.||.|||||.||.|||
BPUM_2527___y    494 TTGAGTTTACAGTGATGAATGATGAAAAAATGCTCCTTGCAAAAGCATGG    543

BSNT_04206___    544 GACAACCGCATTGGCTGTGCGATTGCAATTGATGT-GTTAAGAAACTTAC    592
                     ||||||||.||.||||||||..|.||.|||||||| .|.||| |||||||
BPUM_2527___y    544 GACAACCGTATCGGCTGTGCAGTAGCGATTGATGTCATGAAG-AACTTAC    592

BSNT_04206___    593 AAAACACAGATCATCCAAATATAGTGTATGGCGTCGGAACCGTGCAGGAG    642
                     |.||.||..|.|||...|||||.|..|||.|.||.|.|||.||.||.|||
BPUM_2527___y    593 ACAATACTCAGCATGAGAATATTGCTTATAGTGTTGCAACTGTACAAGAG    642

BSNT_04206___    643 GAAGTCGGCCTGAGGGGAGCGAAAACGGCTGC----ACACACCATTCAGC    688
                     |||||.||||||.|.||.||.|||||.||.||    |||    |||||||
BPUM_2527___y    643 GAAGTTGGCCTGCGTGGTGCCAAAACAGCAGCGTCTACA----ATTCAGC    688

BSNT_04206___    689 CTGATATTGCGTTTGGTGTTGATGTAGGGATAGCAGGAGACACGCCTGGC    738
                     |||||||||..||||...|||||||.||..||||||||||||||||.|||
BPUM_2527___y    689 CTGATATTGGATTTGCCATTGATGTTGGTGTAGCAGGAGACACGCCGGGC    738

BSNT_04206___    739 ATTTCCGAGAAAGAAGCGCAGAGCAAAATGGGCAAAGGCCCGCAGATTAT    788
                     ||..|.||.||||||||...|||||||.|.||||||||.|||..||||.|
BPUM_2527___y    739 ATCACTGAAAAAGAAGCAACGAGCAAACTTGGCAAAGGGCCGACGATTGT    788

BSNT_04206___    789 CGTTTACGATGCATCCATGGTCTCTCACAAAGGTTTGCGCGATGCAGTTG    838
                     .||.|..|||||.||.|||||.|||||.|||||..|.||||||...||||
BPUM_2527___y    789 TGTATTTGATGCTTCGATGGTATCTCATAAAGGGCTTCGCGATTTTGTTG    838

BSNT_04206___    839 TAGCC--ACTGCGGAGGAAGCCGGCATTCCGTACCAATTTGATGCCATTG    886
                     |  ||  ||.|||||.|||.....|||.||.|||||||.||||.||| ||
BPUM_2527___y    839 T--CCAAACAGCGGATGAATTGAACATCCCTTACCAATATGATTCCA-TG    885

BSNT_04206___    887 CC-GGCGGCGGAACTGATTCTGGTGCCATCCATTTGACGGCGAATGGTGT    935
                     || ||||||||.||.|||.||||.|..||||||||.||.|...|||||||
BPUM_2527___y    886 CCTGGCGGCGGGACAGATGCTGGCGGTATCCATTTAACAGGTCATGGTGT    935

BSNT_04206___    936 TCCTGCGCTGTCCAT-----TACCATTGCAACCCGCTACATTCATACGCA    980
                     .||..|.||.||.||     |||     |||.|.|.||.||.|||||.||
BPUM_2527___y    936 GCCATCACTATCGATCGGGATAC-----CAAGCAGATATATCCATACCCA    980

BSNT_04206___    981 CGCGGCCATGCTGCATCGTGATGATTATGAAAACGCGGTAAAGTTAATTA   1030
                     .||.||.|||.|.||.||.||||||||||||||.||.||.|||.|..|.|
BPUM_2527___y    981 TGCTGCGATGATTCACCGAGATGATTATGAAAATGCAGTGAAGCTTTTAA   1030

BSNT_04206___   1031 CAGAAGTCATTAAGAAG--TTAGACCGAAAAACGGTTGACGAAATTACGT   1078
                     |||||||.||.|| |||  || ||.|.||||||||||||..|.||.||||
BPUM_2527___y   1031 CAGAAGTGATCAA-AAGACTT-GATCAAAAAACGGTTGAGCAGATCACGT   1078

BSNT_04206___   1079 AC----CAATAA   1086
                     ||    | .|||
BPUM_2527___y   1079 ACGGTTC-TTAA   1089


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