Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04181 and BPUM_2523
See
Amino acid alignment /
Visit
BSNT_04181 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:42
# Commandline: needle
# -asequence dna-align/BSNT_04181___ysgA.1.24716.seq
# -bsequence dna-align/BPUM_2523___ysgA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04181___ysgA-BPUM_2523___ysgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04181___ysgA-BPUM_2523___ysgA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04181___ysgA
# 2: BPUM_2523___ysgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 827
# Identity: 505/827 (61.1%)
# Similarity: 505/827 (61.1%)
# Gaps: 163/827 (19.7%)
# Score: 1475.0
#
#
#=======================================
BSNT_04181___ 1 GTGAAACAAATAGAATCGGCAAAAAAC-CAAAAAGTGAAGGATTGGAAAA 49
.|||||.|.||||||||.||||||||| ||.|.| |.||..|.|||||||
BPUM_2523___y 1 TTGAAATATATAGAATCAGCAAAAAACACACACA-TTAAACAGTGGAAAA 49
BSNT_04181___ 50 AGCTTCACACAAAAAAAGAACGAACAAAAACAAATACA-------TTTCT 92
||||.||.||.||||||||||||||.||||| |||||
BPUM_2523___y 50 AGCTCCATACGAAAAAAGAACGAACGAAAAC-------GGGGCTGTTTCT 92
BSNT_04181___ 93 GATAGAGGGAGAACACCTCGTTGAAGAGGCGTTGAAAAGCCCGGGCATTG 142
..|.||||||...|||.|.||.|||||.||.|||||.|| |||.|| ||
BPUM_2523___y 93 CGTGGAGGGAATCCACTTAGTCGAAGAAGCATTGAAGAG-CCGAGC--TG 139
BSNT_04181___ 143 TGAAAGAAAT-------------CCTTGTAAAGGATGAAACGAGGATTCC 179
||||||||.| |||..||| |.||||
BPUM_2523___y 140 TGAAAGAATTAATGGTCACATCGCCTGATAA-------------GCTTCC 176
BSNT_04181___ 180 TTCAGATCTTGAGACTGGTATCCAGTGCTATATG--CTGAGTGAAGATGC 227
|||..||.|.||..|||..|| .|.|||.|||| |||||.|||||.||
BPUM_2523___y 177 TTCTCATATCGATCCTGACAT--TGAGCTTTATGAACTGAGCGAAGAAGC 224
BSNT_04181___ 228 GTTTTCAGCTGTGACTGAAACCGAAACGCCGCAGCAGATTGCCGCTGTGT 277
.||||..||..||||.|||||.||||||||.|||||.||.||.||.||.|
BPUM_2523___y 225 CTTTTTTGCCATGACCGAAACGGAAACGCCTCAGCACATCGCGGCAGTTT 274
BSNT_04181___ 278 GCCATA---TGCC------TGAAGAAAAG----CTGGCAACGGCACGCAA 314
| || |.|| |||||||||| .|| ||||.|
BPUM_2523___y 275 G---TACAGTTCCTGTATTTGAAGAAAAGAAGTATG--AACGAC------ 313
BSNT_04181___ 315 GGTGCTGCTGATTGACGCTGTTCAAGATCCGGGAAACCTTGGCACAATGA 364
|.||.|||.|.||.||.||.||.||.||.||.||..|.||||||.|.|
BPUM_2523___y 314 --TTCTTCTGTTAGATGCAGTGCAGGACCCAGGTAATTTAGGCACACTCA 361
BSNT_04181___ 365 TTCGAACGGCTGATGCGGCCGGTTTGGATGCGGTTGTACTCGGTGACGGC 414
||||.||.||.|||||.||.|||.|.|||||.||..|..|.||.||.||.
BPUM_2523___y 362 TTCGGACAGCAGATGCAGCAGGTCTTGATGCTGTGATCTTAGGCGATGGA 411
BSNT_04181___ 415 ACGGCGGACGCCTTTAACGGAAAAACACTGCGATCTGCTCAAGGATCTCA 464
||.|..||.||.|.||||||||||||.||.||.||.||.|||||.||.||
BPUM_2523___y 412 ACAGTTGATGCGTATAACGGAAAAACGCTCCGTTCCGCACAAGGGTCACA 461
BSNT_04181___ 465 CTTCCATATTCCTGTTGTGAGAAG-AAACCTGCCTTCATATGTGGAC--- 510
.|||||..|.||..||.| .||| ||| ||||||| |..|||
BPUM_2523___y 462 TTTCCACCTACCCATTTT--AAAGCAAA---GCCTTCA---GCAGACCAT 503
BSNT_04181___ 511 ----GAATTGAAGGCAG-AGGGCGTAAAAGTATACGGCACGGCGC----- 550
|.||..|||| || |.|||.|....||||||||.|..||||
BPUM_2523___y 504 AGCAGCATGTAAGG-AGCAAGGCATTCCTGTATACGGAAGCGCGCTAAAC 552
BSNT_04181___ 551 --TGCAAAACGG------AGCGCCTTAC--CAGGAGATTCCTCAGTCTGA 590
|||.|||..| |||| |.|| |||.|| |||
BPUM_2523___y 553 AATGCGAAAGCGTATAAAAGCG--TAACGGCAGAAG--------GTC--- 589
BSNT_04181___ 591 ATCCTTTGCGCTCATTGTAGGAAATGAAGGTGCAGGGGTGGATGCTGCAT 640
|.||||||.|.|||||.||.|||||||| ||||
BPUM_2523___y 590 --CGTTTGCGTTGATTGTGGGTAATGAAGG---AGGG------------- 621
BSNT_04181___ 641 TGCTGGAAAAAAC----GGATT-------TGA---ACC------TGTACG 670
||.|.|||| .|||| ||| ||| |.||.|
BPUM_2523___y 622 ----GGTATAAACCCAGAGATTCTTCAAATGACTGACCACAATTTATATG 667
BSNT_04181___ 671 TGCCGCTTTACGGACAGGCTGAATCACTAAACGTTGCGGTTGCGGCTGCC 720
||||..|.||.|||||||||||||||.||||.||.||.|||||.||.||.
BPUM_2523___y 668 TGCCAATGTATGGACAGGCTGAATCATTAAATGTGGCTGTTGCAGCGGCA 717
BSNT_04181___ 721 ATCCTCGTGTATCACTTGCGAGGATAG 747
.|.||.||.|||||.|||||.||||||
BPUM_2523___y 718 GTTCTTGTTTATCATTTGCGTGGATAG 744
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.