Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04175 and BPUM_2520
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:42
# Commandline: needle
# -asequence dna-align/BSNT_04175___rnhC.1.24716.seq
# -bsequence dna-align/BPUM_2520___rnhC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04175___rnhC-BPUM_2520___rnhC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04175___rnhC-BPUM_2520___rnhC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04175___rnhC
# 2: BPUM_2520___rnhC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1012
# Identity: 663/1012 (65.5%)
# Similarity: 663/1012 (65.5%)
# Gaps: 161/1012 (15.9%)
# Score: 2045.5
#
#
#=======================================
BSNT_04175___ 1 GTGTCCCATTCAGTGATAAAAGTATCGTTGTCTGCTAT----TGACC--A 44
|||.||||.||.||..||||||.|.| || .|||| |
BPUM_2520___r 1 GTGCCCCAATCCGTCTTAAAAGCAAC----------ATCAGAAGACCTTA 40
BSNT_04175___ 45 AATGAAAATGACATACAGCG-GTTCGCTTACAGCCT--CTGTTCCG---- 87
|| ||.|||| |.|||| ||..||..||..||| |||.|.||
BPUM_2520___r 41 AA--AAGATGA---AGAGCGCGTATGCGCACCACCTAACTGATACGTTAC 85
BSNT_04175___ 88 ---CAGGGAGCCGTTTTTCAGGCGAAACCGCCCGGCTGTACCATTACAGC 134
|| ||.|||.|||||||.||.||....||.||||||||.||||||||
BPUM_2520___r 86 CACCA-GGCGCCCTTTTTCAAGCAAAGGTTCCTGGCTGTACGATTACAGC 134
BSNT_04175___ 135 ATATAAATCAGGCAAGGTCTTGTTTCAAGG-CAAAAACGCAGCGGCAGAA 183
.|||..|||.||.||.||..|.|||||||| ||||| |||.|||
BPUM_2520___r 135 TTATCGATCTGGAAAAGTGCTATTTCAAGGACAAAA-------GGCTGAA 177
BSNT_04175___ 184 TCCGCGCGCTGGGGAA--CAG-CA---GAGCC--GGAAAAGAA------- 218
||| ||| ||| || .|||| ..|||||.|
BPUM_2520___r 178 -------GCT---GAAGCCAGTCAATTCAGCCATTTAAAAGCAACTGATC 217
BSNT_04175___ 219 -GAAAATGGCCAAAAA-GCCGGCTGATC-CCCGCTATGCCCCTCCGGCAG 265
||||| |..|||||| .||.|||| || |....|||...||.|||.|||
BPUM_2520___r 218 CGAAAA-GTTCAAAAACACCTGCTG-TCACAAAATATAGTCCGCCGTCAG 265
BSNT_04175___ 266 ATATCGCCGGAATGTCTGTTATCGGTTCTGACGAAGTCGGAACCGGAGAT 315
..||.|||...|||||.||.||||||||.||.|||||.|||||.||.|||
BPUM_2520___r 266 GGATTGCCTCTATGTCCGTCATCGGTTCAGATGAAGTAGGAACTGGTGAT 315
BSNT_04175___ 316 TACTTTGGCCCAATGACGGT-TGTATG-CGCGTACGTCGACAAAACCATG 363
||.|||||.||.||.||||| || || |||.||.||.| |||
BPUM_2520___r 316 TATTTTGGACCGATAACGGTCTG--TGCCGCCTATGTTG--------ATG 355
BSNT_04175___ 364 --------CTTCCTTTAATGAAGGAACTCGGTGTTAAGGATTCTAAAGAT 405
|||.||.|.|||||.||.||.||.||.||.||.||.||||..
BPUM_2520___r 356 CTAGCCACCTTGCTCTCATGAAAGAGCTTGGCGTAAAAGACTCAAAAGGC 405
BSNT_04175___ 406 TTAAAAGATCCGCAAATCATCGAGATTGCCCGAAACCTGATCAAAACCAT 455
.|||||||.||||||||.|||.|.|||||...|.|.||.|||||||||||
BPUM_2520___r 406 CTAAAAGACCCGCAAATTATCAACATTGCTAAAGATCTCATCAAAACCAT 455
BSNT_04175___ 456 TCCATATAGCCTGCTGGTTTTAAAAAATGAAAAGTATAACAGCATGCAGG 505
|||.|..|||||.||.||..||..|||||||||||||||...||||||||
BPUM_2520___r 456 TCCGTTCAGCCTTCTCGTACTACGAAATGAAAAGTATAATGCCATGCAGG 505
BSNT_04175___ 506 AAAAAGGCATGAGCCAAGGGAAAATGAAAGCTTTGCTGCACAATCAGGCG 555
||||.|||||||||||||||||||||||.||..|.||.|||||.||.|.|
BPUM_2520___r 506 AAAAGGGCATGAGCCAAGGGAAAATGAAGGCGCTCCTTCACAACCAAGTG 555
BSNT_04175___ 556 ATCACCCATTT---ATTAAGAAAATTGGATGGAGTAA-AGCCTGAAGCCA 601
|||||| |.| .|..|| |||||.||||| |.|| ||||||||||.|
BPUM_2520___r 556 ATCACC--TCTGCGCTGGAG-AAATTAGATGG-GAAACAGCCTGAAGCTA 601
BSNT_04175___ 602 TTTTGATTGACCAATTCGCTGAGCCAGGCGTCTACTTCAATCATTT---- 647
||||||||||||||||.||.||.||.||..|.||.||.||.|||.|
BPUM_2520___r 602 TTTTGATTGACCAATTTGCAGAACCGGGTATTTATTTTAAGCATCTTGCT 651
BSNT_04175___ 648 ---AAAGGGCAGAGACATT-GTGAAGGAGCGGACCTATTTTAGCACAAAA 693
||| |.|..|||| | |||||||||.||.||||||||||||
BPUM_2520___r 652 GGAAAA----AAAATCATTCG----GGAGCGGACGTACTTTAGCACAAAA 693
BSNT_04175___ 694 GCTGAAGGTATTCACCTGGCTGTCGCCGCTGCTTCAATCATTGCAAGATA 743
||.|||||.|||||..||.|.||.||.||.|||||.||.||||||||.||
BPUM_2520___r 694 GCAGAAGGCATTCATTTGTCAGTTGCTGCCGCTTCCATTATTGCAAGGTA 743
BSNT_04175___ 744 TTCGTTTTTAATGGAAATGGATAAACTATCACGCGAGGCA----GGAATG 789
..|.||||||||.|||||||||||..|||| .||.||| ||..||
BPUM_2520___r 744 CGCTTTTTTAATTGAAATGGATAAGTTATC---TGAAGCAGCAGGGTTTG 790
BSNT_04175___ 790 ACGCTTCCAAAAGGGGCCGGTCCTCACGTCGATGAAGCGGCCGCCAAGCT 839
| |.|||||||.||.||.||||||||.||.||..|.||.||.||.|||||
BPUM_2520___r 791 A-GATTCCAAAGGGAGCAGGTCCTCATGTGGACAAGGCCGCTGCAAAGCT 839
BSNT_04175___ 840 GATCCTCAAAA-----------AAGGGGCATCTGCAC-TCAGAACCTTTA 877
.||| || |||.||| ||| || ||| .||||
BPUM_2520___r 840 CATC-----AAGCTGCACGGCGAAGAGGC-TCT--ACGTCA----ATTTA 877
BSNT_04175___ 878 CAAAACTCCATTTCGCCAATACGCAAAAAGCGCAGCGCCTTGCTGATAAA 927
|||||||.|||||.|||||.||.||||||||| |||
BPUM_2520___r 878 CAAAACTGCATTTTGCCAACACACAAAAAGCG---------------AAA 912
BSNT_04175___ 928 AAACGTTCATAG 939
|||.|.|.|||.
BPUM_2520___r 913 AAATGGTTATAA 924
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