Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04175 and BPUM_2520

See Amino acid alignment / Visit BSNT_04175 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:42
# Commandline: needle
#    -asequence dna-align/BSNT_04175___rnhC.1.24716.seq
#    -bsequence dna-align/BPUM_2520___rnhC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04175___rnhC-BPUM_2520___rnhC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04175___rnhC-BPUM_2520___rnhC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04175___rnhC
# 2: BPUM_2520___rnhC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1012
# Identity:     663/1012 (65.5%)
# Similarity:   663/1012 (65.5%)
# Gaps:         161/1012 (15.9%)
# Score: 2045.5
# 
#
#=======================================

BSNT_04175___      1 GTGTCCCATTCAGTGATAAAAGTATCGTTGTCTGCTAT----TGACC--A     44
                     |||.||||.||.||..||||||.|.|          ||    .||||  |
BPUM_2520___r      1 GTGCCCCAATCCGTCTTAAAAGCAAC----------ATCAGAAGACCTTA     40

BSNT_04175___     45 AATGAAAATGACATACAGCG-GTTCGCTTACAGCCT--CTGTTCCG----     87
                     ||  ||.||||   |.|||| ||..||..||..|||  |||.|.||    
BPUM_2520___r     41 AA--AAGATGA---AGAGCGCGTATGCGCACCACCTAACTGATACGTTAC     85

BSNT_04175___     88 ---CAGGGAGCCGTTTTTCAGGCGAAACCGCCCGGCTGTACCATTACAGC    134
                        || ||.|||.|||||||.||.||....||.||||||||.||||||||
BPUM_2520___r     86 CACCA-GGCGCCCTTTTTCAAGCAAAGGTTCCTGGCTGTACGATTACAGC    134

BSNT_04175___    135 ATATAAATCAGGCAAGGTCTTGTTTCAAGG-CAAAAACGCAGCGGCAGAA    183
                     .|||..|||.||.||.||..|.|||||||| |||||       |||.|||
BPUM_2520___r    135 TTATCGATCTGGAAAAGTGCTATTTCAAGGACAAAA-------GGCTGAA    177

BSNT_04175___    184 TCCGCGCGCTGGGGAA--CAG-CA---GAGCC--GGAAAAGAA-------    218
                            |||   |||  ||| ||   .||||  ..|||||.|       
BPUM_2520___r    178 -------GCT---GAAGCCAGTCAATTCAGCCATTTAAAAGCAACTGATC    217

BSNT_04175___    219 -GAAAATGGCCAAAAA-GCCGGCTGATC-CCCGCTATGCCCCTCCGGCAG    265
                      ||||| |..|||||| .||.|||| || |....|||...||.|||.|||
BPUM_2520___r    218 CGAAAA-GTTCAAAAACACCTGCTG-TCACAAAATATAGTCCGCCGTCAG    265

BSNT_04175___    266 ATATCGCCGGAATGTCTGTTATCGGTTCTGACGAAGTCGGAACCGGAGAT    315
                     ..||.|||...|||||.||.||||||||.||.|||||.|||||.||.|||
BPUM_2520___r    266 GGATTGCCTCTATGTCCGTCATCGGTTCAGATGAAGTAGGAACTGGTGAT    315

BSNT_04175___    316 TACTTTGGCCCAATGACGGT-TGTATG-CGCGTACGTCGACAAAACCATG    363
                     ||.|||||.||.||.||||| ||  || |||.||.||.|        |||
BPUM_2520___r    316 TATTTTGGACCGATAACGGTCTG--TGCCGCCTATGTTG--------ATG    355

BSNT_04175___    364 --------CTTCCTTTAATGAAGGAACTCGGTGTTAAGGATTCTAAAGAT    405
                             |||.||.|.|||||.||.||.||.||.||.||.||.||||..
BPUM_2520___r    356 CTAGCCACCTTGCTCTCATGAAAGAGCTTGGCGTAAAAGACTCAAAAGGC    405

BSNT_04175___    406 TTAAAAGATCCGCAAATCATCGAGATTGCCCGAAACCTGATCAAAACCAT    455
                     .|||||||.||||||||.|||.|.|||||...|.|.||.|||||||||||
BPUM_2520___r    406 CTAAAAGACCCGCAAATTATCAACATTGCTAAAGATCTCATCAAAACCAT    455

BSNT_04175___    456 TCCATATAGCCTGCTGGTTTTAAAAAATGAAAAGTATAACAGCATGCAGG    505
                     |||.|..|||||.||.||..||..|||||||||||||||...||||||||
BPUM_2520___r    456 TCCGTTCAGCCTTCTCGTACTACGAAATGAAAAGTATAATGCCATGCAGG    505

BSNT_04175___    506 AAAAAGGCATGAGCCAAGGGAAAATGAAAGCTTTGCTGCACAATCAGGCG    555
                     ||||.|||||||||||||||||||||||.||..|.||.|||||.||.|.|
BPUM_2520___r    506 AAAAGGGCATGAGCCAAGGGAAAATGAAGGCGCTCCTTCACAACCAAGTG    555

BSNT_04175___    556 ATCACCCATTT---ATTAAGAAAATTGGATGGAGTAA-AGCCTGAAGCCA    601
                     ||||||  |.|   .|..|| |||||.||||| |.|| ||||||||||.|
BPUM_2520___r    556 ATCACC--TCTGCGCTGGAG-AAATTAGATGG-GAAACAGCCTGAAGCTA    601

BSNT_04175___    602 TTTTGATTGACCAATTCGCTGAGCCAGGCGTCTACTTCAATCATTT----    647
                     ||||||||||||||||.||.||.||.||..|.||.||.||.|||.|    
BPUM_2520___r    602 TTTTGATTGACCAATTTGCAGAACCGGGTATTTATTTTAAGCATCTTGCT    651

BSNT_04175___    648 ---AAAGGGCAGAGACATT-GTGAAGGAGCGGACCTATTTTAGCACAAAA    693
                        |||    |.|..|||| |    |||||||||.||.||||||||||||
BPUM_2520___r    652 GGAAAA----AAAATCATTCG----GGAGCGGACGTACTTTAGCACAAAA    693

BSNT_04175___    694 GCTGAAGGTATTCACCTGGCTGTCGCCGCTGCTTCAATCATTGCAAGATA    743
                     ||.|||||.|||||..||.|.||.||.||.|||||.||.||||||||.||
BPUM_2520___r    694 GCAGAAGGCATTCATTTGTCAGTTGCTGCCGCTTCCATTATTGCAAGGTA    743

BSNT_04175___    744 TTCGTTTTTAATGGAAATGGATAAACTATCACGCGAGGCA----GGAATG    789
                     ..|.||||||||.|||||||||||..||||   .||.|||    ||..||
BPUM_2520___r    744 CGCTTTTTTAATTGAAATGGATAAGTTATC---TGAAGCAGCAGGGTTTG    790

BSNT_04175___    790 ACGCTTCCAAAAGGGGCCGGTCCTCACGTCGATGAAGCGGCCGCCAAGCT    839
                     | |.|||||||.||.||.||||||||.||.||..|.||.||.||.|||||
BPUM_2520___r    791 A-GATTCCAAAGGGAGCAGGTCCTCATGTGGACAAGGCCGCTGCAAAGCT    839

BSNT_04175___    840 GATCCTCAAAA-----------AAGGGGCATCTGCAC-TCAGAACCTTTA    877
                     .|||     ||           |||.||| |||  || |||    .||||
BPUM_2520___r    840 CATC-----AAGCTGCACGGCGAAGAGGC-TCT--ACGTCA----ATTTA    877

BSNT_04175___    878 CAAAACTCCATTTCGCCAATACGCAAAAAGCGCAGCGCCTTGCTGATAAA    927
                     |||||||.|||||.|||||.||.|||||||||               |||
BPUM_2520___r    878 CAAAACTGCATTTTGCCAACACACAAAAAGCG---------------AAA    912

BSNT_04175___    928 AAACGTTCATAG    939
                     |||.|.|.|||.
BPUM_2520___r    913 AAATGGTTATAA    924


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.