Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04173 and BPUM_2518
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:42
# Commandline: needle
# -asequence dna-align/BSNT_04173___yshB.1.24716.seq
# -bsequence dna-align/BPUM_2518___yshB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04173___yshB-BPUM_2518___yshB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04173___yshB-BPUM_2518___yshB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04173___yshB
# 2: BPUM_2518___yshB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 559
# Identity: 370/559 (66.2%)
# Similarity: 370/559 (66.2%)
# Gaps: 50/559 ( 8.9%)
# Score: 1098.0
#
#
#=======================================
BSNT_04173___ 1 ATGCTAGATATCATCATCTTAATCTTGCTCCTGATGGGGACTTTACTGGG 50
.||.|.|||||||||||.||..|.|||||.||.|||||.||..|..|.||
BPUM_2518___y 1 GTGATCGATATCATCATTTTGTTTTTGCTTCTTATGGGAACGCTTGTCGG 50
BSNT_04173___ 51 GTTAAAACGCGGTTTTATCCTGCAGTTTATCCGCTTGACGAGCTTTATTT 100
..||||||||||.|||||.||.||.|||||....||||..||||||.||.
BPUM_2518___y 51 TCTAAAACGCGGGTTTATTCTTCAATTTATTAAATTGATCAGCTTTGTTG 100
BSNT_04173___ 101 TATCAATTGCCTTTGCGGCTT---TATTCTATAAAAACG----TGGCACC 143
|.||.|| |||.|.||||| |.||.|||.| | |.|||||
BPUM_2518___y 101 TTTCTAT---CTTAGTGGCTTCCATGTTTTATCA----GTCACTTGCACC 143
BSNT_04173___ 144 GCA-TTTACATTGGATTCCCGCACCCGATTTTTCAGCG--GGACAGCCG- 189
.|| .|||| .||||||||.|||||..||||| |||| ||.||..||
BPUM_2518___y 144 ACAGCTTAC-GTGGATTCCAGCACCTAATTTT--AGCGGCGGTCAAGCGC 190
BSNT_04173___ 190 -GCTCTTTCTTTTTTTACGGGGAATTTGGAAGCAGCGTACTATAATGCGA 238
|||| .||||.||||..||||||.|.|||.||||.||.||||||.|.|
BPUM_2518___y 191 AGCTC--GCTTTCTTTAGTGGGAATCTAGAAACAGCTTATTATAATACCA 238
BSNT_04173___ 239 TTGCGTTTATCGTTTTATTTATCATTG-CTAAAATCTTACTGAGAATCAT 287
|||||||||||.||.|.|||||| ||| |.||||||.|.||....|||||
BPUM_2518___y 239 TTGCGTTTATCATTCTGTTTATC-TTGACCAAAATCCTGCTCGCCATCAT 287
BSNT_04173___ 288 CGGCTCGTTCTTGAGTATTG----------TCGCCGGCATTCCGGTGATC 327
.||| |.|||| |.||..|.||.||.||.||.
BPUM_2518___y 288 TGGC----------GGATTGCTCACAACCATTGCAAGTATACCTGTAATT 327
BSNT_04173___ 328 AAACAAATCAACCAATTGCTGGGCGCCGTTCTCGGTTTTCTAGAAGTCTA 377
||.||..|||||.||.||||.||||..|||.|.||.|||||.|||..|||
BPUM_2518___y 328 AAGCAGGTCAACAAACTGCTTGGCGGTGTTTTAGGATTTCTTGAAACCTA 377
BSNT_04173___ 378 TTTATTTACATTTGTGCTGCTGTATGTCGCATCCGTT-CTGCCGGTAGAT 426
|.|||||..||||.|.||..|||.|||||| |.|.|| ||.||.||.|||
BPUM_2518___y 378 TCTATTTGTATTTATTCTCTTGTTTGTCGC-TGCATTACTTCCAGTCGAT 426
BSNT_04173___ 427 GCACTGCAGCAAATGATGGGGCAATCGTCCCTCGCAAATGTGATCATTAA 476
||||||||...||||.||.|..|||||....|.|||.|||.||||.|.|.
BPUM_2518___y 427 GCACTGCAAACAATGTTGAGCAAATCGATATTAGCAGATGCGATCGTAAG 476
BSNT_04173___ 477 CCATACACCATACTTGTCAGGGCTCCTACAAGAGCTGTGGAC-ACAGTAC 525
|||.||.||.||..||||.||.||..|..||||..|.||||| || |||.
BPUM_2518___y 477 CCACACCCCTTATCTGTCCGGTCTTGTCAAAGACTTATGGACGAC-GTAT 525
BSNT_04173___ 526 GGGGCATAA 534
||.|..|||
BPUM_2518___y 526 GGAGTTTAA 534
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