Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04172 and BPUM_2517

See Amino acid alignment / Visit BSNT_04172 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:42
# Commandline: needle
#    -asequence dna-align/BSNT_04172___yshC.1.24716.seq
#    -bsequence dna-align/BPUM_2517___yshC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04172___yshC-BPUM_2517___yshC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04172___yshC-BPUM_2517___yshC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04172___yshC
# 2: BPUM_2517___yshC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1788
# Identity:    1236/1788 (69.1%)
# Similarity:  1236/1788 (69.1%)
# Gaps:         150/1788 ( 8.4%)
# Score: 4025.5
# 
#
#=======================================

BSNT_04172___      1 ATGCATAAAAAAGATATTATCCGGCTGCTTGAAACCATTGCAGTCTATAT     50
                     |||.|||||||||||||||||...||.||||||||.||||||||||||||
BPUM_2517___y      1 ATGAATAAAAAAGATATTATCAAACTTCTTGAAACAATTGCAGTCTATAT     50

BSNT_04172___     51 GGAACTAAAAGGGGACAACCCGTTTAAAGTATCCGCCTTTCGAAAAGCGG    100
                     |||.||||||||.||.||.||.||||||.|.||.||||||||.|||||.|
BPUM_2517___y     51 GGAGCTAAAAGGAGATAATCCTTTTAAAATTTCTGCCTTTCGTAAAGCAG    100

BSNT_04172___    101 CGGCAGCCCTGGAACAGGACGACCGAAGCTTATCAGAAATGGACGATATG    150
                     |.||.||.||||||||.||.|||||.|||.|.||..||||.||.|||.| 
BPUM_2517___y    101 CAGCGGCACTGGAACAAGATGACCGCAGCCTTTCTCAAATAGATGATCT-    149

BSNT_04172___    151 ATGTCGC--TGTCCGGCATTGGAAAAGGAACGTACAGC-GTCATTAAAGA    197
                     || |.||  |..|||||||||||||||||||.| ..|| ||.||.|..||
BPUM_2517___y    150 AT-TAGCATTACCCGGCATTGGAAAAGGAACCT-TTGCTGTGATCACTGA    197

BSNT_04172___    198 GTATATAGATGAAGGAAAGTCAAGCACGCTCGAATCGCTTCAGAAA-GAA    246
                     ||||||.||..|||||.|.|||...||.|||||| |..||.|.||| |||
BPUM_2517___y    198 GTATATCGAAAAAGGACAATCAGAAACACTCGAA-CAATTAAAAAAGGAA    246

BSNT_04172___    247 GTGCCGGAAGGACTCGTGCCTTTATTGAAGCTGCCGGGGCTCGGCGGCAA    296
                     |||||.||||||||.||.||..|.|||||..||||.||.||||||||.||
BPUM_2517___y    247 GTGCCTGAAGGACTTGTCCCGCTTTTGAAATTGCCAGGACTCGGCGGGAA    296

BSNT_04172___    297 AAAAATCGCAAAGCTATATAAAGAGCTCGGCGTACATGATGCAGAATCTC    346
                     .||.|||||.|||||.||..|||||||.|||||.|||||||||.|.||||
BPUM_2517___y    297 GAAGATCGCTAAGCTTTACCAAGAGCTTGGCGTCCATGATGCACAGTCTC    346

BSNT_04172___    347 TGAAGGAAGCCTGTGAACAGCAAAAGGTACAAGGTCTTGCGGGCTTCGGC    396
                     |.||.|||||.||.|||..|.||||||||||||..|||||.||||||||.
BPUM_2517___y    347 TAAAAGAAGCATGCGAAGCGGAAAAGGTACAAGCGCTTGCTGGCTTCGGG    396

BSNT_04172___    397 AAAAAATCGGAAGAAAA-AATATTACAGGCGCTCGGGGAAGCCGGAAAAC    445
                     ||||||.|.|||||||| |.|.||.|| ||.||.|.||||||.|||||.|
BPUM_2517___y    397 AAAAAAACAGAAGAAAAGATTCTTGCA-GCTCTTGAGGAAGCAGGAAAGC    445

BSNT_04172___    446 AGCCTGAACGGTTCCCGATCGGCTACGCCCTCCGGATCGCGCGGGAAATT    495
                     ||||.|||||..|.||.||.||||..||..|  .|||   |.||.|.|  
BPUM_2517___y    446 AGCCAGAACGACTGCCAATTGGCTTTGCATT--AGAT---GTGGCAGA--    488

BSNT_04172___    496 GAGGAGCATCTTTCTCA---ATTT------ACGCA---TATCATCAAATT    533
                     |||||     ||..|||   |.||      |.|.|   |||||||...||
BPUM_2517___y    489 GAGGA-----TTGATCATGCACTTGAAGAGATGAAAGGTATCATCCGTTT    533

BSNT_04172___    534 TTCTCGTGCCGGAAGTCTCCGCAGAGCGCGGGAAACGGTGAAGGATCTGG    583
                     |||..|.|||||.||..|..|..|.||.||.|||||.||.||.|||.|.|
BPUM_2517___y    534 TTCAAGAGCCGGCAGCTTAAGACGTGCACGCGAAACCGTCAAAGATTTAG    583

BSNT_04172___    584 ATTATATCATTGCTACAG---ATCATCCG-GCTGAAGTAAGAGAGCAGCT    629
                     |||||||||||||.||||   |||||  | ||  ||||.|||||.||.||
BPUM_2517___y    584 ATTATATCATTGCAACAGACAATCAT--GAGC--AAGTCAGAGAACAACT    629

BSNT_04172___    630 T------CTTGA-GCTGCCAAACATCAAAAGCGTGATCGCAAGCGGAGAT    672
                     |      ||||| |.||..|||.||       ||.|||||||||||.|||
BPUM_2517___y    630 TGTTGCACTTGATGATGTGAAAGAT-------GTAATCGCAAGCGGTGAT    672

BSNT_04172___    673 ACGAAGGTGTCCGTCATCCTTTCCTTTGAATATGAAACAAGCGTCGATTT    722
                     |||||.||.||.||..|.|||.||.||||.|.|||||..||.||.|||||
BPUM_2517___y    673 ACGAAAGTATCTGTTGTGCTTGCCCTTGATTTTGAAATCAGTGTTGATTT    722

BSNT_04172___    723 CCGTCTTGTGACGGAAGAGCAGTTTCCGACAACACTCCATCATTTTACGG    772
                     |.|.||||||||...|||.||.||..|.||.||.||.||.|||||.||.|
BPUM_2517___y    723 CAGGCTTGTGACATCAGATCAATTCGCAACGACGCTGCACCATTTCACTG    772

BSNT_04172___    773 GATCAAAGGATCACAATATTAAAATGCGCCAAATCGCCAAAGAACGCGGC    822
                     |.|||||.|||||.||||||..||||||.||..|.||.||.||||||||.
BPUM_2517___y    773 GCTCAAAAGATCATAATATTCGAATGCGTCAGCTTGCGAAGGAACGCGGA    822

BSNT_04172___    823 GAGCGGATCAGTGAATACGGCGTTGAGACAGTTGAAACCGGAGAGATCAA    872
                     |||||.||.||.|||||.||.||.||.||..|||||||.|||||..|.||
BPUM_2517___y    823 GAGCGCATTAGCGAATATGGTGTGGAAACGATTGAAACTGGAGAAGTAAA    872

BSNT_04172___    873 AACATTT-----CCGAGTGAACGTGAATTTTATGCGCACTTCGGCCTGCC    917
                     |||.|||     |     |||.|.|..|||||||||||.||....||.||
BPUM_2517___y    873 AACGTTTAAAGAC-----GAAAGCGCTTTTTATGCGCATTTTCAACTTCC    917

BSNT_04172___    918 GCTGATTCCGCCGGAAATTCGTGAAAGCGGA-CAGGAAG-TGGAAACCTA    965
                     |||.|||||.||.|||||||||||||.|||| |||  || |.||.||.||
BPUM_2517___y    918 GCTCATTCCACCAGAAATTCGTGAAACCGGAGCAG--AGATTGATACGTA    965

BSNT_04172___    966 CAGCGACAGCA---------TTGAACTGATAGAACCCGGGCAAATCAAAG   1006
                     .|..||.||.|         |.|||.|||.||         |.|||||||
BPUM_2517___y    966 TAAAGAAAGTATGCAGTTTGTAGAATTGAGAG---------ATATCAAAG   1006

BSNT_04172___   1007 GTGATCTCCACATGCACTCAACGTGGAGCGATGGTGCATTTTCGATCAGA   1056
                     |.||.||.||.||||||||.||.|||||.||.||.||.||.||.||..|.
BPUM_2517___y   1007 GCGACCTACATATGCACTCGACATGGAGTGACGGAGCTTTCTCTATTCGT   1056

BSNT_04172___   1057 GAGATGGCTGAAGCCTGCATCAAAAAAGGCTATCAATACATGGCGATCAC   1106
                     ||.|||||.|||||.||.|||..||||||||||.|||||||||||||.||
BPUM_2517___y   1057 GAAATGGCGGAAGCATGTATCGCAAAAGGCTATGAATACATGGCGATTAC   1106

BSNT_04172___   1107 CGATCATTCACAATATTTAAAGGTCGCCAACGGCCTTACTGCAGAAAG-A   1155
                     .||.||.||.|||||||||||.||.||||||||..|.||    .|||| |
BPUM_2517___y   1107 AGACCACTCGCAATATTTAAAAGTAGCCAACGGTTTAAC----AAAAGAA   1152

BSNT_04172___   1156 CTTAAGC---AGCAGGCAAAAGAAATTGACGCACTGAATGCA-GAGTTTG   1201
                     |.|..||   .|||.||||||||||||||.....||||| || ||.||.|
BPUM_2517___y   1153 CGTTTGCGTTTGCAAGCAAAAGAAATTGATAAGTTGAAT-CAGGAATTCG   1201

BSNT_04172___   1202 AAAACTTCCGTATTTTGAAAGGCGTTGAGATGGATATCCTGCCTGACGGT   1251
                     |..|.||.|..||.||.|||||.||.||.|||||||||||||||||.||.
BPUM_2517___y   1202 AGCATTTTCACATATTCAAAGGGGTCGAAATGGATATCCTGCCTGATGGA   1251

BSNT_04172___   1252 ACGCTCGATTATGATGACGATATGCTT----GCGGAAATGGATATCGTTA   1297
                     .||.|.|||||||||||.||    |||    ...||.||||||.|.||.|
BPUM_2517___y   1252 TCGTTAGATTATGATGATGA----CTTTTTAAAAGACATGGATTTTGTCA   1297

BSNT_04172___   1298 TTGCATCGATTCATTCCAGTTTTAATCAGCCGGAACACGTGATTATGAAA   1347
                     ||||.||.||||||||.||.||...||||||||||.|.||.||||||.||
BPUM_2517___y   1298 TTGCGTCTATTCATTCTAGCTTCTCTCAGCCGGAAGAAGTCATTATGGAA   1347

BSNT_04172___   1348 CGGCTTGAGACGGCACTGAC--AAACAAGCATGTTGACATTATCGCACAC   1395
                     ||.|||||.|..|| ||..|  ||.||| ||||||||..|.||.|||||.
BPUM_2517___y   1348 CGCCTTGAAAATGC-CTTGCGTAATCAA-CATGTTGATTTAATTGCACAT   1395

BSNT_04172___   1396 CCGACCGGGCGCCTTATCGGCAGACGGGCCGGTTACG----AAATCGATA   1441
                     ||.||.||.||..|.|||||.|||||||..||.||.|    ||    |||
BPUM_2517___y   1396 CCAACAGGCCGTTTAATCGGTAGACGGGATGGCTATGCCTTAA----ATA   1441

BSNT_04172___   1442 TTGATCAGCTGATTGAGCTTGCGAGGAAAACAAATACGGCGCTTGAACTT   1491
                     |.||||||||.||.||||||||||.|||||||...||.||.||||||||.
BPUM_2517___y   1442 TAGATCAGCTCATAGAGCTTGCGAAGAAAACAGGCACTGCACTTGAACTC   1491

BSNT_04172___   1492 AACGCCAACCCTGCGCGCCTTGATCTGCGCACAGAGCATTTAATGAAAGC   1541
                     |||..|||.||..|..|.||||||.||...||||||||.|||||.|||||
BPUM_2517___y   1492 AACAGCAATCCATCAAGACTTGATTTGAAAACAGAGCACTTAATCAAAGC   1541

BSNT_04172___   1542 AAACGAACAAGGGGT-TACATTGGTGATTAATACTGATGCCCATAATATT   1590
                     |||.|||...||.|| .||| |..||||.|||||.|||||.||.||.||.
BPUM_2517___y   1542 AAATGAAGCGGGTGTGAACA-TCATGATCAATACAGATGCGCACAACATC   1590

BSNT_04172___   1591 GAGATGTTAGACGATATGAAAACTGGCGTTACTGCCGCGCGCAAAGGATG   1640
                     |..|||.|.||..|||||.||..|||.||.||.||.||..|.||.||.||
BPUM_2517___y   1591 GCCATGCTGGAACATATGGAAGTTGGTGTAACAGCTGCAAGAAAGGGCTG   1640

BSNT_04172___   1641 GACGGAAACGAA--AAACGTTCTGAATGCCCGGT----CGCTTAA--AGA   1682
                     |||..|||  ||  |||.||..|||||.|    |    |.||.||  |||
BPUM_2517___y   1641 GACACAAA--AAGGAAATGTCGTGAATAC----TTTTACTCTAAACGAGA   1684

BSNT_04172___   1683 CGTAGAGGTATTTCTGAAGCGCAACGATTAA-------   1713
                     ...|.|.||.|||         ||||..|.|       
BPUM_2517___y   1685 TCAAAAAGTTTTT---------AACGCGTGACAGGTAG   1713


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