Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04172 and BPUM_2517
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:42
# Commandline: needle
# -asequence dna-align/BSNT_04172___yshC.1.24716.seq
# -bsequence dna-align/BPUM_2517___yshC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04172___yshC-BPUM_2517___yshC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04172___yshC-BPUM_2517___yshC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04172___yshC
# 2: BPUM_2517___yshC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1788
# Identity: 1236/1788 (69.1%)
# Similarity: 1236/1788 (69.1%)
# Gaps: 150/1788 ( 8.4%)
# Score: 4025.5
#
#
#=======================================
BSNT_04172___ 1 ATGCATAAAAAAGATATTATCCGGCTGCTTGAAACCATTGCAGTCTATAT 50
|||.|||||||||||||||||...||.||||||||.||||||||||||||
BPUM_2517___y 1 ATGAATAAAAAAGATATTATCAAACTTCTTGAAACAATTGCAGTCTATAT 50
BSNT_04172___ 51 GGAACTAAAAGGGGACAACCCGTTTAAAGTATCCGCCTTTCGAAAAGCGG 100
|||.||||||||.||.||.||.||||||.|.||.||||||||.|||||.|
BPUM_2517___y 51 GGAGCTAAAAGGAGATAATCCTTTTAAAATTTCTGCCTTTCGTAAAGCAG 100
BSNT_04172___ 101 CGGCAGCCCTGGAACAGGACGACCGAAGCTTATCAGAAATGGACGATATG 150
|.||.||.||||||||.||.|||||.|||.|.||..||||.||.|||.|
BPUM_2517___y 101 CAGCGGCACTGGAACAAGATGACCGCAGCCTTTCTCAAATAGATGATCT- 149
BSNT_04172___ 151 ATGTCGC--TGTCCGGCATTGGAAAAGGAACGTACAGC-GTCATTAAAGA 197
|| |.|| |..|||||||||||||||||||.| ..|| ||.||.|..||
BPUM_2517___y 150 AT-TAGCATTACCCGGCATTGGAAAAGGAACCT-TTGCTGTGATCACTGA 197
BSNT_04172___ 198 GTATATAGATGAAGGAAAGTCAAGCACGCTCGAATCGCTTCAGAAA-GAA 246
||||||.||..|||||.|.|||...||.|||||| |..||.|.||| |||
BPUM_2517___y 198 GTATATCGAAAAAGGACAATCAGAAACACTCGAA-CAATTAAAAAAGGAA 246
BSNT_04172___ 247 GTGCCGGAAGGACTCGTGCCTTTATTGAAGCTGCCGGGGCTCGGCGGCAA 296
|||||.||||||||.||.||..|.|||||..||||.||.||||||||.||
BPUM_2517___y 247 GTGCCTGAAGGACTTGTCCCGCTTTTGAAATTGCCAGGACTCGGCGGGAA 296
BSNT_04172___ 297 AAAAATCGCAAAGCTATATAAAGAGCTCGGCGTACATGATGCAGAATCTC 346
.||.|||||.|||||.||..|||||||.|||||.|||||||||.|.||||
BPUM_2517___y 297 GAAGATCGCTAAGCTTTACCAAGAGCTTGGCGTCCATGATGCACAGTCTC 346
BSNT_04172___ 347 TGAAGGAAGCCTGTGAACAGCAAAAGGTACAAGGTCTTGCGGGCTTCGGC 396
|.||.|||||.||.|||..|.||||||||||||..|||||.||||||||.
BPUM_2517___y 347 TAAAAGAAGCATGCGAAGCGGAAAAGGTACAAGCGCTTGCTGGCTTCGGG 396
BSNT_04172___ 397 AAAAAATCGGAAGAAAA-AATATTACAGGCGCTCGGGGAAGCCGGAAAAC 445
||||||.|.|||||||| |.|.||.|| ||.||.|.||||||.|||||.|
BPUM_2517___y 397 AAAAAAACAGAAGAAAAGATTCTTGCA-GCTCTTGAGGAAGCAGGAAAGC 445
BSNT_04172___ 446 AGCCTGAACGGTTCCCGATCGGCTACGCCCTCCGGATCGCGCGGGAAATT 495
||||.|||||..|.||.||.||||..||..| .||| |.||.|.|
BPUM_2517___y 446 AGCCAGAACGACTGCCAATTGGCTTTGCATT--AGAT---GTGGCAGA-- 488
BSNT_04172___ 496 GAGGAGCATCTTTCTCA---ATTT------ACGCA---TATCATCAAATT 533
||||| ||..||| |.|| |.|.| |||||||...||
BPUM_2517___y 489 GAGGA-----TTGATCATGCACTTGAAGAGATGAAAGGTATCATCCGTTT 533
BSNT_04172___ 534 TTCTCGTGCCGGAAGTCTCCGCAGAGCGCGGGAAACGGTGAAGGATCTGG 583
|||..|.|||||.||..|..|..|.||.||.|||||.||.||.|||.|.|
BPUM_2517___y 534 TTCAAGAGCCGGCAGCTTAAGACGTGCACGCGAAACCGTCAAAGATTTAG 583
BSNT_04172___ 584 ATTATATCATTGCTACAG---ATCATCCG-GCTGAAGTAAGAGAGCAGCT 629
|||||||||||||.|||| ||||| | || ||||.|||||.||.||
BPUM_2517___y 584 ATTATATCATTGCAACAGACAATCAT--GAGC--AAGTCAGAGAACAACT 629
BSNT_04172___ 630 T------CTTGA-GCTGCCAAACATCAAAAGCGTGATCGCAAGCGGAGAT 672
| ||||| |.||..|||.|| ||.|||||||||||.|||
BPUM_2517___y 630 TGTTGCACTTGATGATGTGAAAGAT-------GTAATCGCAAGCGGTGAT 672
BSNT_04172___ 673 ACGAAGGTGTCCGTCATCCTTTCCTTTGAATATGAAACAAGCGTCGATTT 722
|||||.||.||.||..|.|||.||.||||.|.|||||..||.||.|||||
BPUM_2517___y 673 ACGAAAGTATCTGTTGTGCTTGCCCTTGATTTTGAAATCAGTGTTGATTT 722
BSNT_04172___ 723 CCGTCTTGTGACGGAAGAGCAGTTTCCGACAACACTCCATCATTTTACGG 772
|.|.||||||||...|||.||.||..|.||.||.||.||.|||||.||.|
BPUM_2517___y 723 CAGGCTTGTGACATCAGATCAATTCGCAACGACGCTGCACCATTTCACTG 772
BSNT_04172___ 773 GATCAAAGGATCACAATATTAAAATGCGCCAAATCGCCAAAGAACGCGGC 822
|.|||||.|||||.||||||..||||||.||..|.||.||.||||||||.
BPUM_2517___y 773 GCTCAAAAGATCATAATATTCGAATGCGTCAGCTTGCGAAGGAACGCGGA 822
BSNT_04172___ 823 GAGCGGATCAGTGAATACGGCGTTGAGACAGTTGAAACCGGAGAGATCAA 872
|||||.||.||.|||||.||.||.||.||..|||||||.|||||..|.||
BPUM_2517___y 823 GAGCGCATTAGCGAATATGGTGTGGAAACGATTGAAACTGGAGAAGTAAA 872
BSNT_04172___ 873 AACATTT-----CCGAGTGAACGTGAATTTTATGCGCACTTCGGCCTGCC 917
|||.||| | |||.|.|..|||||||||||.||....||.||
BPUM_2517___y 873 AACGTTTAAAGAC-----GAAAGCGCTTTTTATGCGCATTTTCAACTTCC 917
BSNT_04172___ 918 GCTGATTCCGCCGGAAATTCGTGAAAGCGGA-CAGGAAG-TGGAAACCTA 965
|||.|||||.||.|||||||||||||.|||| ||| || |.||.||.||
BPUM_2517___y 918 GCTCATTCCACCAGAAATTCGTGAAACCGGAGCAG--AGATTGATACGTA 965
BSNT_04172___ 966 CAGCGACAGCA---------TTGAACTGATAGAACCCGGGCAAATCAAAG 1006
.|..||.||.| |.|||.|||.|| |.|||||||
BPUM_2517___y 966 TAAAGAAAGTATGCAGTTTGTAGAATTGAGAG---------ATATCAAAG 1006
BSNT_04172___ 1007 GTGATCTCCACATGCACTCAACGTGGAGCGATGGTGCATTTTCGATCAGA 1056
|.||.||.||.||||||||.||.|||||.||.||.||.||.||.||..|.
BPUM_2517___y 1007 GCGACCTACATATGCACTCGACATGGAGTGACGGAGCTTTCTCTATTCGT 1056
BSNT_04172___ 1057 GAGATGGCTGAAGCCTGCATCAAAAAAGGCTATCAATACATGGCGATCAC 1106
||.|||||.|||||.||.|||..||||||||||.|||||||||||||.||
BPUM_2517___y 1057 GAAATGGCGGAAGCATGTATCGCAAAAGGCTATGAATACATGGCGATTAC 1106
BSNT_04172___ 1107 CGATCATTCACAATATTTAAAGGTCGCCAACGGCCTTACTGCAGAAAG-A 1155
.||.||.||.|||||||||||.||.||||||||..|.|| .|||| |
BPUM_2517___y 1107 AGACCACTCGCAATATTTAAAAGTAGCCAACGGTTTAAC----AAAAGAA 1152
BSNT_04172___ 1156 CTTAAGC---AGCAGGCAAAAGAAATTGACGCACTGAATGCA-GAGTTTG 1201
|.|..|| .|||.||||||||||||||.....||||| || ||.||.|
BPUM_2517___y 1153 CGTTTGCGTTTGCAAGCAAAAGAAATTGATAAGTTGAAT-CAGGAATTCG 1201
BSNT_04172___ 1202 AAAACTTCCGTATTTTGAAAGGCGTTGAGATGGATATCCTGCCTGACGGT 1251
|..|.||.|..||.||.|||||.||.||.|||||||||||||||||.||.
BPUM_2517___y 1202 AGCATTTTCACATATTCAAAGGGGTCGAAATGGATATCCTGCCTGATGGA 1251
BSNT_04172___ 1252 ACGCTCGATTATGATGACGATATGCTT----GCGGAAATGGATATCGTTA 1297
.||.|.|||||||||||.|| ||| ...||.||||||.|.||.|
BPUM_2517___y 1252 TCGTTAGATTATGATGATGA----CTTTTTAAAAGACATGGATTTTGTCA 1297
BSNT_04172___ 1298 TTGCATCGATTCATTCCAGTTTTAATCAGCCGGAACACGTGATTATGAAA 1347
||||.||.||||||||.||.||...||||||||||.|.||.||||||.||
BPUM_2517___y 1298 TTGCGTCTATTCATTCTAGCTTCTCTCAGCCGGAAGAAGTCATTATGGAA 1347
BSNT_04172___ 1348 CGGCTTGAGACGGCACTGAC--AAACAAGCATGTTGACATTATCGCACAC 1395
||.|||||.|..|| ||..| ||.||| ||||||||..|.||.|||||.
BPUM_2517___y 1348 CGCCTTGAAAATGC-CTTGCGTAATCAA-CATGTTGATTTAATTGCACAT 1395
BSNT_04172___ 1396 CCGACCGGGCGCCTTATCGGCAGACGGGCCGGTTACG----AAATCGATA 1441
||.||.||.||..|.|||||.|||||||..||.||.| || |||
BPUM_2517___y 1396 CCAACAGGCCGTTTAATCGGTAGACGGGATGGCTATGCCTTAA----ATA 1441
BSNT_04172___ 1442 TTGATCAGCTGATTGAGCTTGCGAGGAAAACAAATACGGCGCTTGAACTT 1491
|.||||||||.||.||||||||||.|||||||...||.||.||||||||.
BPUM_2517___y 1442 TAGATCAGCTCATAGAGCTTGCGAAGAAAACAGGCACTGCACTTGAACTC 1491
BSNT_04172___ 1492 AACGCCAACCCTGCGCGCCTTGATCTGCGCACAGAGCATTTAATGAAAGC 1541
|||..|||.||..|..|.||||||.||...||||||||.|||||.|||||
BPUM_2517___y 1492 AACAGCAATCCATCAAGACTTGATTTGAAAACAGAGCACTTAATCAAAGC 1541
BSNT_04172___ 1542 AAACGAACAAGGGGT-TACATTGGTGATTAATACTGATGCCCATAATATT 1590
|||.|||...||.|| .||| |..||||.|||||.|||||.||.||.||.
BPUM_2517___y 1542 AAATGAAGCGGGTGTGAACA-TCATGATCAATACAGATGCGCACAACATC 1590
BSNT_04172___ 1591 GAGATGTTAGACGATATGAAAACTGGCGTTACTGCCGCGCGCAAAGGATG 1640
|..|||.|.||..|||||.||..|||.||.||.||.||..|.||.||.||
BPUM_2517___y 1591 GCCATGCTGGAACATATGGAAGTTGGTGTAACAGCTGCAAGAAAGGGCTG 1640
BSNT_04172___ 1641 GACGGAAACGAA--AAACGTTCTGAATGCCCGGT----CGCTTAA--AGA 1682
|||..||| || |||.||..|||||.| | |.||.|| |||
BPUM_2517___y 1641 GACACAAA--AAGGAAATGTCGTGAATAC----TTTTACTCTAAACGAGA 1684
BSNT_04172___ 1683 CGTAGAGGTATTTCTGAAGCGCAACGATTAA------- 1713
...|.|.||.||| ||||..|.|
BPUM_2517___y 1685 TCAAAAAGTTTTT---------AACGCGTGACAGGTAG 1713
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