Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04171 and BPUM_2516
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:41
# Commandline: needle
# -asequence dna-align/BSNT_04171___mutSB.1.24716.seq
# -bsequence dna-align/BPUM_2516___mutS2.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04171___mutSB-BPUM_2516___mutS2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04171___mutSB-BPUM_2516___mutS2.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04171___mutSB
# 2: BPUM_2516___mutS2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2479
# Identity: 1691/2479 (68.2%)
# Similarity: 1691/2479 (68.2%)
# Gaps: 239/2479 ( 9.6%)
# Score: 5523.5
#
#
#=======================================
BSNT_04171___ 1 ---GTGCAGCAAAAAGTATTATCAGCTCTTGAATTTCATAAAGTGAAAGA 47
.||||.||||||||.||||||.|..|.||||||||||||||.|||||
BPUM_2516___m 1 ATGCTGCAACAAAAAGTGTTATCATCATTAGAATTTCATAAAGTAAAAGA 50
BSNT_04171___ 48 ACAGGTTATTGGGC--ATGCCGCTTCATCGCTCGGAAAAGAAATGCTTCT 95
|.|.||.|| |.| ||.||||.||..|..|.||||||||||
BPUM_2516___m 51 AAAAGTGAT--GTCCTATACCGCATCCACATTAGGAAAAGAAA------- 91
BSNT_04171___ 96 CGAGC-------TTAA-GCCTTCTGCTTCTATAGACGAAATTAAAAAACA 137
|||| |||| .||| |.||||.|..||.|||.||
BPUM_2516___m 92 -GAGCGCAGGATTTAACACCT----------TTGACGGATATAGAAACCA 130
BSNT_04171___ 138 ----------GCTGGATGAAGTAGACGAAGCTTCTGACATTATCCGGCTG 177
||||||.||.||||..|||||....||..|.|||| |||.
BPUM_2516___m 131 TTCAGCATTTGCTGGAAGAGGTAGCAGAAGCGCAAGATGTGATCC-GCTT 179
BSNT_04171___ 178 AGAGG---CCAAGCGCCATTTGGCGGCCTTGTAGATATCAGAGGAGC-GT 223
|.||| | .||||||||||||||..|...||||||.|||.|.|| ||
BPUM_2516___m 180 AAAGGGATC--TGCGCCATTTGGCGGATTAACAGATATTAGACGTGCAGT 227
BSNT_04171___ 224 TAAGACGGGCGGAAATCGGCAGCGTTC--TCAGTCCTTCTGAATTCACTG 271
.|| ||||||.|||||||||| ||.| |.||.||||||||..|.|..|
BPUM_2516___m 228 GAA-ACGGGCAGAAATCGGCA--GTACATTAAGCCCTTCTGAGCTGATGG 274
BSNT_04171___ 272 AAATCTCAGGCCTGCTTTATGCAGTTAAACAAATGAAACATTTTATCAC- 320
|||||.||||.||..|.|||||.||.|||.|.||||||||.|||.||||
BPUM_2516___m 275 AAATCGCAGGACTATTATATGCGGTGAAAAATATGAAACACTTTCTCACG 324
BSNT_04171___ 321 -CCAAATGGCTGAAGACGGTGTCGACATTCCGC----TGATCCATCAGCA 365
|| |||..||||||.||.||.||.||.|||| |.||.||| |
BPUM_2516___m 325 TCC--ATGTATGAAGATGGAGTAGATATACCGCGCCTTCATACAT----A 368
BSNT_04171___ 366 TGCTGA-ACAGCTTATCACGCTGTCCGATTTAGAGCGGGACATT------ 408
|||.|| || |||.|| ||||..||..||||||
BPUM_2516___m 369 TGCAGAGAC-GCTCAT------------TTTACTGCCTGACATTAGAAAA 405
BSNT_04171___ 409 --AATT----CCTGCATTGATGATCACGGAGAAGTGCTTGATCATGCATC 452
|||| .|||.||.|..||..|.||||||||.|||||||||||
BPUM_2516___m 406 GAAATTGAAAGCTGTATCGGCGACAATGGAGAAGTACTTGATCATGC--- 452
BSNT_04171___ 453 GGAAACATTAAGAGGAATCC-GCAC-----ACAGCTCAGAACAC------ 490
|||| || |||| |||..|| ||||.|
BPUM_2516___m 453 ---AACA-----------CCGGCACTTCGTACAATTC-GAACGCAATTAC 487
BSNT_04171___ 491 ------TCGAATCAAGAGTCAGAGACCGGTTAGAGTCGATGCTGCGTTCC 534
|.|||||||.||||.|.||....|||||..|||||.|.|||||.
BPUM_2516___m 488 GTTCTTTAGAATCAAAAGTCCGTGATAAATTAGAAGCGATGATTCGTTCA 537
BSNT_04171___ 535 TCTTCCGCTTCGAAAATGCTGTCTGATACGATTGTTACGATTCGGAATGA 584
...||.|||||.|||||||||||.||.||.|||||.||.|||||.|||||
BPUM_2516___m 538 CAATCGGCTTCAAAAATGCTGTCAGACACCATTGTCACCATTCGTAATGA 587
BSNT_04171___ 585 CCGCTTTGTGATCCCGGTCAAACAGGAGTACAGATCCAGCTATGGAGGAA 634
|||.|||||.||.||.||.|||||.||||||.|.||.|..||.||.||||
BPUM_2516___m 588 CCGGTTTGTTATTCCAGTGAAACAAGAGTACCGCTCGAATTACGGCGGAA 637
BSNT_04171___ 635 TTGTGCACGA-CACCTCATCCTCTGGTGCGACATTATTCATTGAACCGC- 682
||||.||||| || .||.||.||.||.||.||..|.||.|||||.||||
BPUM_2516___m 638 TTGTTCACGATCA-GTCTTCATCAGGGGCAACTCTTTTTATTGAGCCGCA 686
BSNT_04171___ 683 AGGCGATTGTAGATATGAACAATTCCCTTCAGCAGGCGAAA-----GTGA 727
||.|| |.||.|||.|.||.||..||.|.|||| ||| .|.|
BPUM_2516___m 687 AGTCG-TCGTGGATGTAAATAACACCTTGCAGC-----AAACCCGTTTAA 730
BSNT_04171___ 728 AAGAAAAGCAAGAAATTGAACGGATTTTGCGTGTGCTGACAGAGAAAACG 777
||||.||||||||..|||||..|||..|||...||||||||||||....|
BPUM_2516___m 731 AAGAGAAGCAAGAGGTTGAAAAGATCCTGCAAATGCTGACAGAGAGTGTG 780
BSNT_04171___ 778 GCAGAGTATACAGAGGAGCTATTTCTAGATTTGCAAGTGCTGCAGACGCT 827
.|||||.|.|..|.|||.||..|||...||.|..|.|..||.||||||||
BPUM_2516___m 781 TCAGAGCACATTGGGGAACTGCTTCACAATGTAAAGGAACTACAGACGCT 830
BSNT_04171___ 828 TGACTTTATTTTTGCAAAAGCTAGATATGCAAAAGCGGTTAAAGCGACAA 877
.||.|||||||||||.|||||||.|||||||||..|.|..|||||.||.|
BPUM_2516___m 831 AGATTTTATTTTTGCTAAAGCTAAATATGCAAAGACAGAAAAAGCCACTA 880
BSNT_04171___ 878 AACCGATTATGAACGA-CACCGGCTTTATCCGTTTGAAAAAAGCCCGCCA 926
||||...|.||||.|| || .||....|||..|||.|||..|||..|.||
BPUM_2516___m 881 AACCTGCTGTGAATGATCA-AGGAGAAATCTATTTAAAACGAGCAAGACA 929
BSNT_04171___ 927 TCC---ATTGCTTCCGCCTGACCAGGTTGTTGCCAATGACATCGAGCTTG 973
||| |||||.||.| ||.||.|||||.||.|||||.||.||.||.|
BPUM_2516___m 930 TCCTCTATTGCCTCGG---GATCAAGTTGTCGCAAATGATATTGAACTCG 976
BSNT_04171___ 974 GCCGCGATTTTTCAACCATTGTCATCACAGGGCCAAACACCGGGGGGAAA 1023
|....|||||||||||.|||||.|||||.||.|||||.||.|||||.||.
BPUM_2516___m 977 GTAAAGATTTTTCAACAATTGTGATCACTGGACCAAATACAGGGGGAAAG 1026
BSNT_04171___ 1024 ACAGTCACCCTTAAAACGTTAGGCCTGCTAACCTTAATGGCGCAATCAGG 1073
||.||.||..|.||||||.|.||.||.||.||.||.|||.|.||..|.||
BPUM_2516___m 1027 ACCGTTACTTTAAAAACGCTTGGTCTTCTGACGTTGATGACACAGGCGGG 1076
BSNT_04171___ 1074 TCTTCATATCCCGGCAGATGAAGGGTCAGAAGCGGCAGTATTTGAGCACG 1123
.||.|||||.||.|..||.|||||.||.||||.|||.||.||.||.||.|
BPUM_2516___m 1077 CCTCCATATTCCAGTTGAAGAAGGCTCTGAAGTGGCTGTGTTCGACCAAG 1126
BSNT_04171___ 1124 TATTCGCTGATATCGGTGATGAACAGTCGATTGAGCAAAGTTTAAGTACG 1173
|.||.||||||||.||.||.|||||.||.|||||.|||||.||.||||||
BPUM_2516___m 1127 TCTTTGCTGATATTGGAGACGAACAATCCATTGAACAAAGCTTGAGTACG 1176
BSNT_04171___ 1174 TTCTCATCCCATATGGTGAACATTGTCGGCATTTTAGAACAGGTCAATGA 1223
||||||||.||||||||.||.|||||||..||.|| ||.||
BPUM_2516___m 1177 TTCTCATCTCATATGGTCAATATTGTCGATATCTT----------AAAGA 1216
BSNT_04171___ 1224 A----------AACAGCCTTGTGCTTTTCGATGAACTTGGTGCAGGGACA 1263
| |||...||.||..|.||.||||||.|.||.|||||.|||
BPUM_2516___m 1217 ATTTGACTTCTAACTCTCTCGTTTTATTTGATGAATTAGGGGCAGGAACA 1266
BSNT_04171___ 1264 GATCCGCAG--GAGGGGGCGGCCCTCGCCATGAGCATCTTGGATGACGTG 1311
|| |.||| ||.||.|||||.||.||.||||||||.||.|||||.|||
BPUM_2516___m 1267 GA--CCCAGCTGAAGGTGCGGCACTTGCGATGAGCATATTAGATGAAGTG 1314
BSNT_04171___ 1312 CATCGCACCAATGCACGAGTGTTAGCTACGACGCATTATCCGGAATTGAA 1361
||||..||.||||||||.||..|.||.|||||.|||||.||.||..||||
BPUM_2516___m 1315 CATCAAACAAATGCACGTGTCATTGCAACGACTCATTACCCCGAGCTGAA 1364
BSNT_04171___ 1362 GGCGTACGGCTATAACAGAGAAGGCGTCATGAATGCCAGCGTTGAATTTG 1411
|||.||.||.||||||.|.||||||||||.||||||.|||||.||.||||
BPUM_2516___m 1365 GGCATATGGGTATAACCGGGAAGGCGTCACGAATGCAAGCGTGGAGTTTG 1414
BSNT_04171___ 1412 ACATCGAAACGCTGTCACCGACCTATAAACTTTTAATTGGTGTGCCGGGT 1461
|.||||||||..|.|||||.||.|||...||..|.||.||||||||.||.
BPUM_2516___m 1415 ATATCGAAACCTTATCACCAACGTATCGCCTGCTCATCGGTGTGCCTGGA 1464
BSNT_04171___ 1462 CGAAGCAATGCTTTCGAAATTTCAAAACGCCTCGGGCTTCCGGACCATAT 1511
|||||.||.||.||.|||||||||||.||.||.||..|.||.||.||..|
BPUM_2516___m 1465 CGAAGTAACGCATTTGAAATTTCAAAGCGTCTTGGTTTGCCAGATCACCT 1514
BSNT_04171___ 1512 CAT----CGGGCAGGCGAAGTCAGAAATGACGGCCGAGCATAACGAAGTC 1557
.|| |||||| ||..|.||.|||...||.||||||||.|||||.
BPUM_2516___m 1515 GATAGACCGGGCA----AAAGCGGATATGCATGCAGAGCATAATGAAGTA 1560
BSNT_04171___ 1558 GATACGATGATTGCGTCGCTGGAACAAAGCAAAAAACGTGCGGAAGAAGA 1607
||....||||||||.||..|.|||.|.|||||.||||..||.||||||||
BPUM_2516___m 1561 GACCAAATGATTGCTTCATTAGAAGATAGCAAGAAACAGGCAGAAGAAGA 1610
BSNT_04171___ 1608 GCTTTCTGAGACAGAA-TCAATCAGAAAAGAAGCGGAAAAACTGCATAAA 1656
.||...|||||||||| ||.|| |||||||||||.|||||.||.||||||
BPUM_2516___m 1611 ACTGCATGAGACAGAAGTCTAT-AGAAAAGAAGCAGAAAAGCTTCATAAA 1659
BSNT_04171___ 1657 GAGCTGCAGCAG-CAAAT-----CATCGAGCTTAACAGCAAAAAAGACAA 1700
||..|||| .|| ||||| .||.|| |..||| ||||||||||
BPUM_2516___m 1660 GAATTGCA-AAGACAAATTCTTGAATGGA----ATGAGC-AAAAAGACAA 1703
BSNT_04171___ 1701 AATGCTTGAAGAGGCAGAACAGCAGGCTGCTGAAAAAGTAA-------AA 1743
|.||||||||||.||.||||.|.|.|| ||||.||.|| ||
BPUM_2516___m 1704 ACTGCTTGAAGAAGCTGAACTGAAAGC----GAAAGAGAAAATTGAACAA 1749
BSNT_04171___ 1744 GCGGCAATGAAAGAAGCCGAGGACATTATTCATGAATTGCGCACCATAAA 1793
||..|| ||||||||.||.||.||.|||||.||..|.||..|.|||||
BPUM_2516___m 1750 GCATCA---AAAGAAGCAGAAGAGATCATTCAAGAGCTCCGTTCGATAAA 1796
BSNT_04171___ 1794 AGAAGAACACAAATCCTTCAAGGATCACGAGCTGATTAA--CGCGAAGAA 1841
|...||||||...||.|||||.||.||.||.||.||..| ||||| ||
BPUM_2516___m 1797 AAGTGAACACCGCTCATTCAAAGAGCATGAACTCATCGATGCGCGA--AA 1844
BSNT_04171___ 1842 ACGGTTAGAAGGCGCTATGCCGGCTTTTGA----AAAGTCCAAGAAACCG 1887
.||..|.||||..||..|.||.|..||||| ||| |||||.||.
BPUM_2516___m 1845 GCGTCTTGAAGAAGCCGTTCCTGAGTTTGACAGGAAA----AAGAAGCCA 1890
BSNT_04171___ 1888 GAAAAACCGAAAGCGCAAAAACGC-----GAC--TTTAAGCCTGGCGACG 1930
|| |..|||| |||||.|| ||| .|.|||.|.|||||||
BPUM_2516___m 1891 GA------GCCAGCG-AAAAAAGCAGTAAGACAGCTGAAGTCAGGCGACG 1933
BSNT_04171___ 1931 AGGTGAAAGTCCTCACTTTCGGGCAAAAAGGAACATTGCTCGAAAAAACA 1980
|.||.|||||.|||||.|||||||||||||||||.|||||.|||.|||||
BPUM_2516___m 1934 AAGTCAAAGTGCTCACCTTCGGGCAAAAAGGAACGTTGCTTGAACAAACA 1983
BSNT_04171___ 1981 GGCGGCAATGAATGGAATGTTCAAATCGGTATTTTAAAGATGAAAGTAAA 2030
||||.|||.|||||||.|||.|||||.||.|||.|.||.|||||.|||||
BPUM_2516___m 1984 GGCGACAAAGAATGGAGTGTCCAAATGGGCATTCTGAAAATGAAGGTAAA 2033
BSNT_04171___ 2031 AGAAAAAGATCTGGAGTTTATCAAATCAGCTCCGGAGCAAAAAAAAGAAA 2080
|||||||||..||||.||||||||||||||.||.||....||..||||||
BPUM_2516___m 2034 AGAAAAAGACATGGAATTTATCAAATCAGCACCTGAATTTAAGCAAGAAA 2083
BSNT_04171___ 2081 AAATCATTACAGC-GGTCAAGGGAAAGGACTATCACGTATCGCTTGAACT 2129
||..|||.||.|| |.|.|||||||| ||.|||||.||.|||||.|||||
BPUM_2516___m 2084 AAGCCATCACGGCAGTTAAAGGGAAA-GATTATCATGTCTCGCTCGAACT 2132
BSNT_04171___ 2130 TGATCTCCGCGGCGAACGCTATGAAAATGCCCTCAGCCGGGTTGAAAAAT 2179
.|||.|..|.|||||.||.||||||||||||.|.|||.|.||.|||||||
BPUM_2516___m 2133 CGATTTAAGAGGCGAGCGTTATGAAAATGCCTTAAGCAGAGTCGAAAAAT 2182
BSNT_04171___ 2180 ACTTGGATGATGCGGTGTTAGCCGGATATCCAAGAGTGTCAATCATCCAC 2229
|.||.||||||||.||.|||||.||.|||||..|.|||||.||.||.|||
BPUM_2516___m 2183 ATTTAGATGATGCTGTATTAGCTGGTTATCCGCGTGTGTCTATTATTCAC 2232
BSNT_04171___ 2230 GGAAAAGGAACCGGCGCTTTAAGAAAAGGCGTACAGGATCTTCTGAAAAA 2279
|||||||||||.|||||..|.||||||||.||.|||||..|.||||||.|
BPUM_2516___m 2233 GGAAAAGGAACTGGCGCCCTTAGAAAAGGGGTTCAGGAATTACTGAAACA 2282
BSNT_04171___ 2280 CCACCGCAGCGTCAAAAGTTCCCGTTTCGGTGAAGCAGGTGAGGGAGGAT 2329
.||.||.||.||.||||.|.|.|||||.||.|||..||||||||||||||
BPUM_2516___m 2283 GCATCGAAGTGTGAAAAATGCTCGTTTTGGCGAACAAGGTGAGGGAGGAT 2332
BSNT_04171___ 2330 CAGGCGTTACGGTTGTTGAACTAAAATAA 2358
|||||||.||..|.||.|||.||||.|||
BPUM_2516___m 2333 CAGGCGTCACCATCGTCGAATTAAAGTAA 2361
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