Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04162 and BPUM_2509
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:40
# Commandline: needle
# -asequence dna-align/BSNT_04162___etfA.1.24716.seq
# -bsequence dna-align/BPUM_2509___etfA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04162___etfA-BPUM_2509___etfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04162___etfA-BPUM_2509___etfA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04162___etfA
# 2: BPUM_2509___etfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1014
# Identity: 690/1014 (68.0%)
# Similarity: 690/1014 (68.0%)
# Gaps: 72/1014 ( 7.1%)
# Score: 2187.5
#
#
#=======================================
BSNT_04162___ 1 ATGGGAAAAAAAGTGATCGTGCTTGGAGAAATACGCGATGGGGAATTGCG 50
|||.|.||||||||..|.||.||||||||||..||.||.||..||||..|
BPUM_2509___e 1 ATGAGTAAAAAAGTTGTTGTACTTGGAGAAAGTCGTGACGGTAAATTAAG 50
BSNT_04162___ 51 GAATGTCACCTTTGAAGCAATAGCTGCAGGAAGAAC-CATTTCA----GG 95
.|||||.||.||||||||.||.|||||.| | || ||| |.
BPUM_2509___e 51 AAATGTGACATTTGAAGCCATTGCTGCCG------CTCA--TCAAGTGGC 92
BSNT_04162___ 96 AGAT---GGGGAAGTCATCGGTGTTCTCATCGGTGAAAATGTACAAAG-- 140
|||| ||.||||||||.||.||..|.||.||.||..|.|| |||||
BPUM_2509___e 93 AGATGGCGGTGAAGTCATTGGCGTGTTAATAGGGGATGACGT-CAAAGAC 141
BSNT_04162___ 141 CATTGCACAAGAGCTTATTCATTACGGAGCAGATAAAGTTCTTACCGCTG 190
|| .||..|.||.||..||.|.||.|||||.|||.|.||..|.|..|..|
BPUM_2509___e 142 CA-AGCGAATGAACTGCTTTACTATGGAGCGGATCATGTCATGATTGTGG 190
BSNT_04162___ 191 AGGACCCGAAGCTGAAAACATACACGGCAGACGG----GTACAGCCAGGT 236
||.|.|||.|.||...|...||.|||.||||.|| |..||..||..|
BPUM_2509___e 191 AGCATCCGCACCTTTCATATTATACGTCAGATGGATTTGCGCAAGCACTT 240
BSNT_04162___ 237 CATGAGAGGTGTTATCGAGCAAGA-AAATCCTGATTCAGTCATCTTCGGG 285
|| ||.|.|..|.||.| ||| ..|.||.|||.|.|||.|.||.||.
BPUM_2509___e 241 CA----AGCTATATTAGATC-AGATTGACCCAGATGCCGTCCTTTTTGGC 285
BSNT_04162___ 286 CATACGGCAATGGGCAAGGATCTT-TCACCGAAGCTTGCTGCCCGGCTGC 334
||||||.|.||.||.||.|| ||| ||.|||||..|.|||||.||..|||
BPUM_2509___e 286 CATACGTCTATCGGAAAAGA-CTTGTCGCCGAAAATAGCTGCACGCTTGC 334
BSNT_04162___ 335 AAACAGGCTTAATTTCTGATGCTATAGATGTAAGCGTTACCGGAGGGAAT 384
||||.|||.|.|||||.|||||.||.|||||||||||||||||||...||
BPUM_2509___e 335 AAACTGGCCTCATTTCAGATGCAATTGATGTAAGCGTTACCGGAGAACAT 384
BSNT_04162___ 385 GTTGTGTTCACACGGCCGATTTACTCGGGGAAAGCTTTTGAACGCGTCAT 434
.||||.||.|||.|.|||||||||||.||.|||||.||||||...||.||
BPUM_2509___e 385 CTTGTTTTTACAAGACCGATTTACTCTGGAAAAGCCTTTGAAAAAGTGAT 434
BSNT_04162___ 435 TTCAACCGATCCGATGATCTTTGCAACAATTCGCCCCAATAACATTCAAG 484
||||||.||||...||.|.||.|||||.||.|||||.||||||.|
BPUM_2509___e 435 TTCAACAGATCGTCTGCTTTTGGCAACCATCCGCCCAAATAACGT----- 479
BSNT_04162___ 485 CTTCAGAAAAAGACATCAGCAGATCGGGAAGCATCGA--AAGC--ATAAA 530
|.||.|....||.|||||.||.|| | |||| |.|.|
BPUM_2509___e 480 -----------GGCACCTCTTGAGCGGGATGCCTC-ACGAAGCGGAGACA 517
BSNT_04162___ 531 T-------GTCTCTCT---TACT---GACCTTCGCACCGTGATT---CAA 564
| ||.|||.| ||.| .||.|.||.|| |||| .|.
BPUM_2509___e 518 TTACACCGGTTTCTGTCGATATTCAAAACTTGCGAAC---GATTGTGAAG 564
BSNT_04162___ 565 GAGGTCGTCAAAAAAACAGCTGACGGTGTTGATCTCTCCGAAGCGAAAAT 614
||.|||.|.||||||||..|.||.|||||.|||.|.||.|||||.||..|
BPUM_2509___e 565 GAAGTCATTAAAAAAACGTCAGAAGGTGTAGATTTATCTGAAGCAAAGGT 614
BSNT_04162___ 615 TATCGTTGCGGGCGGCCGAGGAGTCAAAAGTAAGGAAGGATTTCAGCCGC 664
.||.|||||.||.||.||.||.|||||.|||||||||||.|||.|.||||
BPUM_2509___e 615 CATTGTTGCCGGGGGACGTGGGGTCAAGAGTAAGGAAGGGTTTGAACCGC 664
BSNT_04162___ 665 TGCAGGAGCTTGCAGAGGTGCTAGGGGCCGCAGTCGGGGCTTCTCGCGGG 714
||.|.||.||.||.|||..|||.||.||.||||||||.||.||.||.||.
BPUM_2509___e 665 TGAATGAACTCGCTGAGACGCTGGGTGCAGCAGTCGGTGCCTCGCGTGGC 714
BSNT_04162___ 715 GCATGTGACGCTGATTATTGCGATTATGCTCTCCAAATCGGGCAGACCGG 764
||.||||||||.||.||.||.|||||.||.||.|||||.|||||.||.||
BPUM_2509___e 715 GCCTGTGACGCAGACTACTGTGATTACGCCCTGCAAATTGGGCAAACAGG 764
BSNT_04162___ 765 GAAAGTCGTTACTCCGGATTTGTACATTGCATGCGGCATTTCCGGCGCCA 814
.||.|||||.||.||.|||.|.||.|||||.|||||.||.||.||.||.|
BPUM_2509___e 765 CAAGGTCGTCACACCTGATCTCTATATTGCGTGCGGGATATCAGGGGCGA 814
BSNT_04162___ 815 TCCAGCATTTGGCCGGCATGTCAAACAGCAAGGTGATCGTCGCCATCAAT 864
|.||.|||||.|||||.|||||.|||||.||.||.||.||.||.||.||.
BPUM_2509___e 815 TTCAACATTTAGCCGGAATGTCTAACAGTAAAGTCATTGTGGCGATTAAC 864
BSNT_04162___ 865 AAAGACCCCGAAGCCGATATCTTTAAAATAGCGGATTACGGCATCGTCGG 914
||||||||.|||||.||.|||||.|||||.||.||||||||.||||||||
BPUM_2509___e 865 AAAGACCCAGAAGCTGAGATCTTCAAAATCGCCGATTACGGAATCGTCGG 914
BSNT_04162___ 915 TGATTTATTTGAAGTTGTCCCGTTATTAACTGAGGAATTCAAACAATTGA 964
|||.||.||||||||.||.|||.|.||.|.|||.||.||.|||.|..|||
BPUM_2509___e 915 TGACTTGTTTGAAGTGGTACCGCTTTTGAATGAAGAGTTAAAAAAGATGA 964
BSNT_04162___ 965 ATATACACTCATAA 978
||||.|||||.|||
BPUM_2509___e 965 ATATCCACTCGTAA 978
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