Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04156 and BPUM_2506

See Amino acid alignment / Visit BSNT_04156 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:40
# Commandline: needle
#    -asequence dna-align/BSNT_04156___uvrC.1.24716.seq
#    -bsequence dna-align/BPUM_2506___uvrC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04156___uvrC-BPUM_2506___uvrC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04156___uvrC-BPUM_2506___uvrC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04156___uvrC
# 2: BPUM_2506___uvrC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1814
# Identity:    1325/1814 (73.0%)
# Similarity:  1325/1814 (73.0%)
# Gaps:          82/1814 ( 4.5%)
# Score: 4690.0
# 
#
#=======================================

BSNT_04156___      1 ATGAACAAACAACTGAAAGAAAAACTCGCCCTCCTTCCTGATCAACCGGG     50
                     ||||||||||...|.||||||||.||..|..||.|.||.||||||||.||
BPUM_2506___u      1 ATGAACAAACTGATCAAAGAAAAGCTATCGGTCTTGCCAGATCAACCTGG     50

BSNT_04156___     51 TTGTTATCTTATGAAGGACCGGCAGCAGACTGTGATCTACGTAGGGAAA-     99
                     .||.|||.|.|||||.||.||.||..|.||.||.||.||.|| |||||| 
BPUM_2506___u     51 CTGCTATTTAATGAAAGATCGACAAAATACAGTCATTTATGT-GGGAAAG     99

BSNT_04156___    100 GCAAAAGTGCTGAAAAACAGAGTGCGCTCCTACTTCACCGGTTCTCACGA    149
                     |||||..|..|.|||||.|||||.|||||.||.|||||.||.|||||.||
BPUM_2506___u    100 GCAAAGATCTTAAAAAATAGAGTACGCTCTTATTTCACTGGATCTCATGA    149

BSNT_04156___    150 CGCGAAAACCCAAAGGCTTGTGACGGAAATCGAGGATTTTGAATATATCG    199
                     |||.|||||.||..|.|||||.|..|||||.||.||.||||||||.||.|
BPUM_2506___u    150 CGCCAAAACGCAGCGACTTGTCAGTGAAATTGAAGACTTTGAATACATTG    199

BSNT_04156___    200 TGACGTCCTCCAATCTTGAAGCGCTTATTTTAGAAATGAATCTGATCAAA    249
                     |.||.||.||.|||.|.||.||.||.||||||||..|||||.|.||||||
BPUM_2506___u    200 TCACCTCTTCTAATATCGAGGCACTCATTTTAGAGCTGAATTTAATCAAA    249

BSNT_04156___    250 AAGCATGATCCGAAATACAACGTCATGCTCAAAGACGACAAAACCTATCC    299
                     ||..|.||.||.||||||||.|||||||||||.||.||||||||.|||||
BPUM_2506___u    250 AAATACGACCCAAAATACAATGTCATGCTCAAGGATGACAAAACGTATCC    299

BSNT_04156___    300 TTTCATAAAACTCACCCATGAACGCCACCCAAGGCTAATT----GTCACC    345
                     |||.||.|||.|.||..|||||||.||.||.|    ||||    ||||||
BPUM_2506___u    300 TTTTATTAAAATTACGAATGAACGGCATCCTA----AATTGATCGTCACC    345

BSNT_04156___    346 CGCAATGTCAAAAAAGACAAAGGGCGCTATTTCGGGCCGTATCCGAATGT    395
                     ||..||||.|||||.|||||||||...||||||||.||.||.|||||.||
BPUM_2506___u    346 CGTCATGTAAAAAAGGACAAAGGGAAATATTTCGGACCATACCCGAACGT    395

BSNT_04156___    396 ACAGGCAGCAAGGGAAACAAAAAAACTGCTCGACCGTCTGTATCCTCTCA    445
                     ||||||||||.|.||||||||||||||||||||||||.|.||||||||||
BPUM_2506___u    396 ACAGGCAGCACGTGAAACAAAAAAACTGCTCGACCGTTTATATCCTCTCA    445

BSNT_04156___    446 GAAAATGCTCCAAGCTCCCGGACAGAGTGTGCCTTTACTATCATCTGGGC    495
                     |||||||..|||..|||||.|||.|.||.||.||.||.||||||||.||.
BPUM_2506___u    446 GAAAATGTGCCACCCTCCCTGACCGCGTCTGTCTCTATTATCATCTTGGA    495

BSNT_04156___    496 CAATGCCTCGCTCCGTGTGTAAAGGATATTTCCGAAGAGACGAACAGAG-    544
                     |||||.||.||.||.|||||..|.||.|||||.|||||.|||||.| || 
BPUM_2506___u    496 CAATGTCTTGCGCCATGTGTGTATGACATTTCTGAAGAAACGAATA-AGC    544

BSNT_04156___    545 AGC---TGGTTGAAAGCATTACACGTTTCTTAAGGGGCGGCTATAATGAG    591
                     |||   |||.|||||.|||  .|.||||||.||.|            |||
BPUM_2506___u    545 AGCTCGTGGATGAAATCAT--AAGGTTTCTAAACG------------GAG    580

BSNT_04156___    592 G-----------TCAAAAAAGAGCTTGAAGAGAAAATGCATGAAGCTGCT    630
                     |           |.||||||||.||....||.||||||||.||||||||.
BPUM_2506___u    581 GACACCAGCAAATAAAAAAAGAACTCACCGAAAAAATGCAGGAAGCTGCC    630

BSNT_04156___    631 GAGAATCTTGAGTTTGAACGAGCAAAAGAGCTTCGTGACCAAATTGCCCA    680
                     ||..|.||.|||||||||||.||||||||.||..|.||.|||||.||..|
BPUM_2506___u    631 GAACAACTAGAGTTTGAACGGGCAAAAGAACTGAGAGATCAAATCGCTTA    680

BSNT_04156___    681 TATTGAATCAACGATGGAAAAACAAAAAATGACGATGAACGATCTAGTC-    729
                     .|||||.||.||||||||||||||.|||||||||||||.||||.|| || 
BPUM_2506___u    681 CATTGACTCTACGATGGAAAAACAGAAAATGACGATGAGCGATTTA-TCA    729

BSNT_04156___    730 GACCGTGATGTATTCGCGTACGCGTACGATAAGGGCTGGATGTGCGTGCA    779
                     ||.||.|||||.||.||.||.||.||.||.||||||||||||||.||.||
BPUM_2506___u    730 GATCGAGATGTTTTTGCATATGCCTATGACAAGGGCTGGATGTGTGTCCA    779

BSNT_04156___    780 GGTCTTTTTCATCCGCCAAGGAAAGCTCATTGAACGCGATGTCAGCATGT    829
                     .|||||.||||||.|.||.|||||..|.|||||||||||.||.|||.|||
BPUM_2506___u    780 AGTCTTCTTCATCAGGCAGGGAAAATTGATTGAACGCGACGTTAGCCTGT    829

BSNT_04156___    830 TCCCGCTTTATCAGGAAGCAGATGAAGAGTTCCTCACGTTCATCGGGCAG    879
                     |.||..|.|||||.||..|.||.||||||||.||||||||.||.|||||.
BPUM_2506___u    830 TTCCTATGTATCAAGATCCTGAGGAAGAGTTTCTCACGTTTATGGGGCAA    879

BSNT_04156___    880 TTCTATTCAAAAAACAACCACTTCCTTCCGAAGGAGATTTTAGTTCCGGA    929
                     ||.||||||||.|||||||||||.||.||||||||.|||||.||.||.||
BPUM_2506___u    880 TTTTATTCAAAGAACAACCACTTTCTACCGAAGGAAATTTTGGTGCCAGA    929

BSNT_04156___    930 CAGCGTAGATCAATCCATGATCGAGCAGCTGCTGGAAACAAACGTTCACC    979
                     .||||||||||||...|||||.||.||..||||.||.||.||||||||.|
BPUM_2506___u    930 TAGCGTAGATCAAGAGATGATTGAACAATTGCTTGAGACGAACGTTCATC    979

BSNT_04156___    980 AGCCGAAGAAAGGCCCGAAAAAAGAACTGCTCATGCTTGCCCATAAAAAT   1029
                     |||||||.|||||...||||||.||..||||..|.||.||||||.|||||
BPUM_2506___u    980 AGCCGAAAAAAGGAAAGAAAAAGGACTTGCTTTTACTAGCCCATCAAAAT   1029

BSNT_04156___   1030 GCGAAAATCGCATTGAAAGAAAAATTCTCTTTAATCGAACGGGACGAGGA   1079
                     ||.||||||||.||.|||||||||||.||..|.||.||.||.||.||.||
BPUM_2506___u   1030 GCCAAAATCGCTTTAAAAGAAAAATTTTCGCTCATTGAGCGTGATGAAGA   1079

BSNT_04156___   1080 GCGTTCAATCGGGGCAGTGCAGAAACTAGGTGAGGCATTAAATATTTATA   1129
                     |||.|||||.||.||.|||.||.|.||.||.||.|||.||||||||||||
BPUM_2506___u   1080 GCGCTCAATTGGTGCGGTGAAGCAGCTTGGAGATGCACTAAATATTTATA   1129

BSNT_04156___   1130 CGCCGCACAGAATTGAAGCGTTTGATAACTCAAACATACAGGGGACAAAC   1179
                     .|||..|..|.|||||.||.|||||||||||.||.||.||.||..|..||
BPUM_2506___u   1130 TGCCTTATCGGATTGAGGCTTTTGATAACTCGAATATTCAAGGTGCTGAC   1179

BSNT_04156___   1180 CCGGTTTCTGCGATGATTGTGTTTATCGATGGCAAACCATACAAAAAGGA   1229
                     ||.||||||||.|||.|.||.|||...||.||.||.||.||.||||||||
BPUM_2506___u   1180 CCAGTTTCTGCCATGGTCGTTTTTCAGGACGGGAAGCCGTATAAAAAGGA   1229

BSNT_04156___   1230 ATACCGCAAATATAAAATCAAAACCGTTACAGGGCCGGATGATTATGGTT   1279
                     ||||||.|||||.|||||.||||||||.|||||.||.||||||||||..|
BPUM_2506___u   1230 ATACCGAAAATACAAAATTAAAACCGTCACAGGTCCAGATGATTATGCAT   1279

BSNT_04156___   1280 CTATGAGAGAGGTTGTCAGAAGACGCTATACGAGAGTGCTTCGTG----A   1325
                     |.|||.|.||.||..|.|||||.||.|||||..|       ||||    |
BPUM_2506___u   1280 CGATGCGTGAAGTCATTAGAAGGCGATATACTCG-------CGTGTTAAA   1322

BSNT_04156___   1326 GAAT---CTGCCGCTGCCCGATCTGATCATCATTGACGGAGGAAAAGGGC   1372
                     |.||   ||.|||||.||.|||.||||..|.||||||||.|||||.||.|
BPUM_2506___u   1323 GGATGAGCTTCCGCTACCAGATTTGATTTTAATTGACGGTGGAAAGGGAC   1372

BSNT_04156___   1373 AGATCAACGCAGCAAGGGATGTCATTGAAAATGA----ACTCGGCTTGGA   1418
                     |||||||.|||||.|..||||||.||||||||||    |.||    ||..
BPUM_2506___u   1373 AGATCAATGCAGCGATAGATGTCCTTGAAAATGAGTTGAATC----TGTC   1418

BSNT_04156___   1419 TATCCCGATCGCCGGTTTAGCGAAAGATGAAAAACACAGAACCTCAAATT   1468
                     |.|.||..|.||.|||.|||..|||||||||||.|||.|.||.||.|||.
BPUM_2506___u   1419 TGTTCCAGTAGCAGGTCTAGTCAAAGATGAAAAGCACCGGACTTCCAATC   1468

BSNT_04156___   1469 TACTGATCGGTGATCCGC-TGGAGGTGGTGTATCTGGAACGAAACAGCCA   1517
                     |..||||.||.|||.|.| ||.|..||.||.| ||.||.||.||.|||||
BPUM_2506___u   1469 TGATGATGGGCGATACACTTGAAATTGTTGCA-CTTGAGCGGAATAGCCA   1517

BSNT_04156___   1518 GGAATTTTACCTCCTGCAGCGCATTCAGGACGAGGTGCACCGTTTTGCAA   1567
                     .|..||.||..|..|||||||||||||.||.||.||||||||.||.||||
BPUM_2506___u   1518 AGCCTTCTATTTATTGCAGCGCATTCAAGATGAAGTGCACCGGTTCGCAA   1567

BSNT_04156___   1568 TCAGTTTTCACAGGCAAATCCGCGGAAAAAGCGCGTTTCAATCCGTTTTG   1617
                     |.||.|||||||||||..|.||||||||||..||.||||||||..||.|.
BPUM_2506___u   1568 TTAGCTTTCACAGGCAGCTACGCGGAAAAAATGCATTTCAATCTATTCTA   1617

BSNT_04156___   1618 GACGACATCCCGGGTATCGGAGAGAAAAG---AAAGAAAA--TGCTGTTA   1662
                     |||||..|.||.|||||||  ||||||||   |||.||.|  |||  |||
BPUM_2506___u   1618 GACGATGTGCCAGGTATCG--GAGAAAAGCGTAAAAAACAGTTGC--TTA   1663

BSNT_04156___   1663 AAGCATTTCGGTTCCGTTAAAAAAATGAAGGAAGCAAGCCTTGAGGACAT   1712
                     || |||||.||.||.||.|||||.|||||.|||||.|...|.||.|||.|
BPUM_2506___u   1664 AA-CATTTTGGCTCTGTGAAAAAGATGAAAGAAGCCACGATCGAAGACTT   1712

BSNT_04156___   1713 CAAAAAAGCCGGTGTTCCCGCAGC-GGCGGCTCAGCTCCTTTACGACAA-   1760
                     ..||.|.||.|| ..|||||.|.| ..||||..||||  ||||..|.|| 
BPUM_2506___u   1713 TCAAGAGGCTGG-CATCCCGAAACAAACGGCCGAGCT--TTTAATAGAAG   1759

BSNT_04156___   1761 -ATTGCAAAAATAA   1773
                      .||..|||||||.
BPUM_2506___u   1760 CTTTAAAAAAATAG   1773


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