Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04156 and BPUM_2506
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:40
# Commandline: needle
# -asequence dna-align/BSNT_04156___uvrC.1.24716.seq
# -bsequence dna-align/BPUM_2506___uvrC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04156___uvrC-BPUM_2506___uvrC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04156___uvrC-BPUM_2506___uvrC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04156___uvrC
# 2: BPUM_2506___uvrC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1814
# Identity: 1325/1814 (73.0%)
# Similarity: 1325/1814 (73.0%)
# Gaps: 82/1814 ( 4.5%)
# Score: 4690.0
#
#
#=======================================
BSNT_04156___ 1 ATGAACAAACAACTGAAAGAAAAACTCGCCCTCCTTCCTGATCAACCGGG 50
||||||||||...|.||||||||.||..|..||.|.||.||||||||.||
BPUM_2506___u 1 ATGAACAAACTGATCAAAGAAAAGCTATCGGTCTTGCCAGATCAACCTGG 50
BSNT_04156___ 51 TTGTTATCTTATGAAGGACCGGCAGCAGACTGTGATCTACGTAGGGAAA- 99
.||.|||.|.|||||.||.||.||..|.||.||.||.||.|| ||||||
BPUM_2506___u 51 CTGCTATTTAATGAAAGATCGACAAAATACAGTCATTTATGT-GGGAAAG 99
BSNT_04156___ 100 GCAAAAGTGCTGAAAAACAGAGTGCGCTCCTACTTCACCGGTTCTCACGA 149
|||||..|..|.|||||.|||||.|||||.||.|||||.||.|||||.||
BPUM_2506___u 100 GCAAAGATCTTAAAAAATAGAGTACGCTCTTATTTCACTGGATCTCATGA 149
BSNT_04156___ 150 CGCGAAAACCCAAAGGCTTGTGACGGAAATCGAGGATTTTGAATATATCG 199
|||.|||||.||..|.|||||.|..|||||.||.||.||||||||.||.|
BPUM_2506___u 150 CGCCAAAACGCAGCGACTTGTCAGTGAAATTGAAGACTTTGAATACATTG 199
BSNT_04156___ 200 TGACGTCCTCCAATCTTGAAGCGCTTATTTTAGAAATGAATCTGATCAAA 249
|.||.||.||.|||.|.||.||.||.||||||||..|||||.|.||||||
BPUM_2506___u 200 TCACCTCTTCTAATATCGAGGCACTCATTTTAGAGCTGAATTTAATCAAA 249
BSNT_04156___ 250 AAGCATGATCCGAAATACAACGTCATGCTCAAAGACGACAAAACCTATCC 299
||..|.||.||.||||||||.|||||||||||.||.||||||||.|||||
BPUM_2506___u 250 AAATACGACCCAAAATACAATGTCATGCTCAAGGATGACAAAACGTATCC 299
BSNT_04156___ 300 TTTCATAAAACTCACCCATGAACGCCACCCAAGGCTAATT----GTCACC 345
|||.||.|||.|.||..|||||||.||.||.| |||| ||||||
BPUM_2506___u 300 TTTTATTAAAATTACGAATGAACGGCATCCTA----AATTGATCGTCACC 345
BSNT_04156___ 346 CGCAATGTCAAAAAAGACAAAGGGCGCTATTTCGGGCCGTATCCGAATGT 395
||..||||.|||||.|||||||||...||||||||.||.||.|||||.||
BPUM_2506___u 346 CGTCATGTAAAAAAGGACAAAGGGAAATATTTCGGACCATACCCGAACGT 395
BSNT_04156___ 396 ACAGGCAGCAAGGGAAACAAAAAAACTGCTCGACCGTCTGTATCCTCTCA 445
||||||||||.|.||||||||||||||||||||||||.|.||||||||||
BPUM_2506___u 396 ACAGGCAGCACGTGAAACAAAAAAACTGCTCGACCGTTTATATCCTCTCA 445
BSNT_04156___ 446 GAAAATGCTCCAAGCTCCCGGACAGAGTGTGCCTTTACTATCATCTGGGC 495
|||||||..|||..|||||.|||.|.||.||.||.||.||||||||.||.
BPUM_2506___u 446 GAAAATGTGCCACCCTCCCTGACCGCGTCTGTCTCTATTATCATCTTGGA 495
BSNT_04156___ 496 CAATGCCTCGCTCCGTGTGTAAAGGATATTTCCGAAGAGACGAACAGAG- 544
|||||.||.||.||.|||||..|.||.|||||.|||||.|||||.| ||
BPUM_2506___u 496 CAATGTCTTGCGCCATGTGTGTATGACATTTCTGAAGAAACGAATA-AGC 544
BSNT_04156___ 545 AGC---TGGTTGAAAGCATTACACGTTTCTTAAGGGGCGGCTATAATGAG 591
||| |||.|||||.||| .|.||||||.||.| |||
BPUM_2506___u 545 AGCTCGTGGATGAAATCAT--AAGGTTTCTAAACG------------GAG 580
BSNT_04156___ 592 G-----------TCAAAAAAGAGCTTGAAGAGAAAATGCATGAAGCTGCT 630
| |.||||||||.||....||.||||||||.||||||||.
BPUM_2506___u 581 GACACCAGCAAATAAAAAAAGAACTCACCGAAAAAATGCAGGAAGCTGCC 630
BSNT_04156___ 631 GAGAATCTTGAGTTTGAACGAGCAAAAGAGCTTCGTGACCAAATTGCCCA 680
||..|.||.|||||||||||.||||||||.||..|.||.|||||.||..|
BPUM_2506___u 631 GAACAACTAGAGTTTGAACGGGCAAAAGAACTGAGAGATCAAATCGCTTA 680
BSNT_04156___ 681 TATTGAATCAACGATGGAAAAACAAAAAATGACGATGAACGATCTAGTC- 729
.|||||.||.||||||||||||||.|||||||||||||.||||.|| ||
BPUM_2506___u 681 CATTGACTCTACGATGGAAAAACAGAAAATGACGATGAGCGATTTA-TCA 729
BSNT_04156___ 730 GACCGTGATGTATTCGCGTACGCGTACGATAAGGGCTGGATGTGCGTGCA 779
||.||.|||||.||.||.||.||.||.||.||||||||||||||.||.||
BPUM_2506___u 730 GATCGAGATGTTTTTGCATATGCCTATGACAAGGGCTGGATGTGTGTCCA 779
BSNT_04156___ 780 GGTCTTTTTCATCCGCCAAGGAAAGCTCATTGAACGCGATGTCAGCATGT 829
.|||||.||||||.|.||.|||||..|.|||||||||||.||.|||.|||
BPUM_2506___u 780 AGTCTTCTTCATCAGGCAGGGAAAATTGATTGAACGCGACGTTAGCCTGT 829
BSNT_04156___ 830 TCCCGCTTTATCAGGAAGCAGATGAAGAGTTCCTCACGTTCATCGGGCAG 879
|.||..|.|||||.||..|.||.||||||||.||||||||.||.|||||.
BPUM_2506___u 830 TTCCTATGTATCAAGATCCTGAGGAAGAGTTTCTCACGTTTATGGGGCAA 879
BSNT_04156___ 880 TTCTATTCAAAAAACAACCACTTCCTTCCGAAGGAGATTTTAGTTCCGGA 929
||.||||||||.|||||||||||.||.||||||||.|||||.||.||.||
BPUM_2506___u 880 TTTTATTCAAAGAACAACCACTTTCTACCGAAGGAAATTTTGGTGCCAGA 929
BSNT_04156___ 930 CAGCGTAGATCAATCCATGATCGAGCAGCTGCTGGAAACAAACGTTCACC 979
.||||||||||||...|||||.||.||..||||.||.||.||||||||.|
BPUM_2506___u 930 TAGCGTAGATCAAGAGATGATTGAACAATTGCTTGAGACGAACGTTCATC 979
BSNT_04156___ 980 AGCCGAAGAAAGGCCCGAAAAAAGAACTGCTCATGCTTGCCCATAAAAAT 1029
|||||||.|||||...||||||.||..||||..|.||.||||||.|||||
BPUM_2506___u 980 AGCCGAAAAAAGGAAAGAAAAAGGACTTGCTTTTACTAGCCCATCAAAAT 1029
BSNT_04156___ 1030 GCGAAAATCGCATTGAAAGAAAAATTCTCTTTAATCGAACGGGACGAGGA 1079
||.||||||||.||.|||||||||||.||..|.||.||.||.||.||.||
BPUM_2506___u 1030 GCCAAAATCGCTTTAAAAGAAAAATTTTCGCTCATTGAGCGTGATGAAGA 1079
BSNT_04156___ 1080 GCGTTCAATCGGGGCAGTGCAGAAACTAGGTGAGGCATTAAATATTTATA 1129
|||.|||||.||.||.|||.||.|.||.||.||.|||.||||||||||||
BPUM_2506___u 1080 GCGCTCAATTGGTGCGGTGAAGCAGCTTGGAGATGCACTAAATATTTATA 1129
BSNT_04156___ 1130 CGCCGCACAGAATTGAAGCGTTTGATAACTCAAACATACAGGGGACAAAC 1179
.|||..|..|.|||||.||.|||||||||||.||.||.||.||..|..||
BPUM_2506___u 1130 TGCCTTATCGGATTGAGGCTTTTGATAACTCGAATATTCAAGGTGCTGAC 1179
BSNT_04156___ 1180 CCGGTTTCTGCGATGATTGTGTTTATCGATGGCAAACCATACAAAAAGGA 1229
||.||||||||.|||.|.||.|||...||.||.||.||.||.||||||||
BPUM_2506___u 1180 CCAGTTTCTGCCATGGTCGTTTTTCAGGACGGGAAGCCGTATAAAAAGGA 1229
BSNT_04156___ 1230 ATACCGCAAATATAAAATCAAAACCGTTACAGGGCCGGATGATTATGGTT 1279
||||||.|||||.|||||.||||||||.|||||.||.||||||||||..|
BPUM_2506___u 1230 ATACCGAAAATACAAAATTAAAACCGTCACAGGTCCAGATGATTATGCAT 1279
BSNT_04156___ 1280 CTATGAGAGAGGTTGTCAGAAGACGCTATACGAGAGTGCTTCGTG----A 1325
|.|||.|.||.||..|.|||||.||.|||||..| |||| |
BPUM_2506___u 1280 CGATGCGTGAAGTCATTAGAAGGCGATATACTCG-------CGTGTTAAA 1322
BSNT_04156___ 1326 GAAT---CTGCCGCTGCCCGATCTGATCATCATTGACGGAGGAAAAGGGC 1372
|.|| ||.|||||.||.|||.||||..|.||||||||.|||||.||.|
BPUM_2506___u 1323 GGATGAGCTTCCGCTACCAGATTTGATTTTAATTGACGGTGGAAAGGGAC 1372
BSNT_04156___ 1373 AGATCAACGCAGCAAGGGATGTCATTGAAAATGA----ACTCGGCTTGGA 1418
|||||||.|||||.|..||||||.|||||||||| |.|| ||..
BPUM_2506___u 1373 AGATCAATGCAGCGATAGATGTCCTTGAAAATGAGTTGAATC----TGTC 1418
BSNT_04156___ 1419 TATCCCGATCGCCGGTTTAGCGAAAGATGAAAAACACAGAACCTCAAATT 1468
|.|.||..|.||.|||.|||..|||||||||||.|||.|.||.||.|||.
BPUM_2506___u 1419 TGTTCCAGTAGCAGGTCTAGTCAAAGATGAAAAGCACCGGACTTCCAATC 1468
BSNT_04156___ 1469 TACTGATCGGTGATCCGC-TGGAGGTGGTGTATCTGGAACGAAACAGCCA 1517
|..||||.||.|||.|.| ||.|..||.||.| ||.||.||.||.|||||
BPUM_2506___u 1469 TGATGATGGGCGATACACTTGAAATTGTTGCA-CTTGAGCGGAATAGCCA 1517
BSNT_04156___ 1518 GGAATTTTACCTCCTGCAGCGCATTCAGGACGAGGTGCACCGTTTTGCAA 1567
.|..||.||..|..|||||||||||||.||.||.||||||||.||.||||
BPUM_2506___u 1518 AGCCTTCTATTTATTGCAGCGCATTCAAGATGAAGTGCACCGGTTCGCAA 1567
BSNT_04156___ 1568 TCAGTTTTCACAGGCAAATCCGCGGAAAAAGCGCGTTTCAATCCGTTTTG 1617
|.||.|||||||||||..|.||||||||||..||.||||||||..||.|.
BPUM_2506___u 1568 TTAGCTTTCACAGGCAGCTACGCGGAAAAAATGCATTTCAATCTATTCTA 1617
BSNT_04156___ 1618 GACGACATCCCGGGTATCGGAGAGAAAAG---AAAGAAAA--TGCTGTTA 1662
|||||..|.||.||||||| |||||||| |||.||.| ||| |||
BPUM_2506___u 1618 GACGATGTGCCAGGTATCG--GAGAAAAGCGTAAAAAACAGTTGC--TTA 1663
BSNT_04156___ 1663 AAGCATTTCGGTTCCGTTAAAAAAATGAAGGAAGCAAGCCTTGAGGACAT 1712
|| |||||.||.||.||.|||||.|||||.|||||.|...|.||.|||.|
BPUM_2506___u 1664 AA-CATTTTGGCTCTGTGAAAAAGATGAAAGAAGCCACGATCGAAGACTT 1712
BSNT_04156___ 1713 CAAAAAAGCCGGTGTTCCCGCAGC-GGCGGCTCAGCTCCTTTACGACAA- 1760
..||.|.||.|| ..|||||.|.| ..||||..|||| ||||..|.||
BPUM_2506___u 1713 TCAAGAGGCTGG-CATCCCGAAACAAACGGCCGAGCT--TTTAATAGAAG 1759
BSNT_04156___ 1761 -ATTGCAAAAATAA 1773
.||..|||||||.
BPUM_2506___u 1760 CTTTAAAAAAATAG 1773
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