Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04150 and BPUM_2503
See
Amino acid alignment /
Visit
BSNT_04150 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:40
# Commandline: needle
# -asequence dna-align/BSNT_04150___sdhC.1.24716.seq
# -bsequence dna-align/BPUM_2503___sdhC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04150___sdhC-BPUM_2503___sdhC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04150___sdhC-BPUM_2503___sdhC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04150___sdhC
# 2: BPUM_2503___sdhC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 616
# Identity: 461/616 (74.8%)
# Similarity: 461/616 (74.8%)
# Gaps: 14/616 ( 2.3%)
# Score: 1658.0
#
#
#=======================================
BSNT_04150___ 1 ATGTCTGGGAACAGAGAGTTTTATTTTCGAAGATTGCATTCCTTGCTTGG 50
|||||.|||||||.|||.||||.||.|||.|||||||||||.||||||||
BPUM_2503___s 1 ATGTCGGGGAACAAAGAATTTTTTTATCGGAGATTGCATTCTTTGCTTGG 50
BSNT_04150___ 51 CGTCATACCGGTCGGCATCTTTCTCATTCAGCATTTAGTCGTCAACCAGT 100
||||||.||||||||..|.|||.|.||||||||.|||||.||.|||||.|
BPUM_2503___s 51 CGTCATTCCGGTCGGTCTATTTTTAATTCAGCACTTAGTTGTGAACCATT 100
BSNT_04150___ 101 TTGCCGCAAGGGGCGCTGAAGCATTCAATAGCGCTGCTCATTTTATGG-A 149
||||..|.||.||..|.||.||.||.||.|..|||||.||.||||||| |
BPUM_2503___s 101 TTGCGACGAGTGGACCAGAGGCGTTTAACAAAGCTGCACACTTTATGGAA 150
BSNT_04150___ 150 TAGTCTGCCTTTCAGGTATGC-CTTGGAAATTTTTATTATCTTCTTACCA 198
.|| ||.||.|||||.||||| ||| ||..|.||..|.||.|||||||||
BPUM_2503___s 151 CAG-CTTCCATTCAGATATGCACTT-GAGCTGTTCGTGATTTTCTTACCA 198
BSNT_04150___ 199 TTAATTTATCATGCAGTTTATGGTGTGTACATAGCGTTTACTGCGAAAAA 248
.|.||.||||||||.||||||||.|||||||||||.|||||.||..||||
BPUM_2503___s 199 CTGATCTATCATGCTGTTTATGGGGTGTACATAGCCTTTACGGCACAAAA 248
BSNT_04150___ 249 TAACGCAGGC-CAATACAGCTACATGAGAAACTGGCTATTCGTCCTGCAG 297
.|||.| |.| |..|.|||.||..|.|||||||||.|.|||...|||||.
BPUM_2503___s 249 CAACAC-GTCTCGCTTCAGTTATTTAAGAAACTGGTTGTTCAGACTGCAA 297
BSNT_04150___ 298 CGTGTAACCGGTATCATCACCCTCATTTTCGTCAGCTGGCACGTGTGGGA 347
.|..|..|.|||||||||||..|.|||||.|||||.||||||||.|||||
BPUM_2503___s 298 AGGATTTCAGGTATCATCACATTGATTTTTGTCAGTTGGCACGTATGGGA 347
BSNT_04150___ 348 AACCCGCATTGCTGCACAAATGGGCGCTGAGGTCAATTTCGACATGATGG 397
|||.||.|||...||.||..|.||.|||||.||.||.|..||||||||||
BPUM_2503___s 348 AACACGAATTCAAGCGCAGCTTGGAGCTGAAGTGAACTATGACATGATGG 397
BSNT_04150___ 398 CGAATATTTTGAGCTCTCCGGCTATGCTTGGTTTTTACATTGTCGGTGTT 447
||||||||||.||||||||...||||||.||.||.||.||||||||.|||
BPUM_2503___s 398 CGAATATTTTAAGCTCTCCATTTATGCTAGGCTTCTATATTGTCGGCGTT 447
BSNT_04150___ 448 TTATCAACAATTTTCCACTTCTCGAACGGTTTATGGTCTTTCGCTGTTAC 497
|||||.||.|||||||||||..|.||.||.||.|||||.||.|||||.|.
BPUM_2503___s 448 TTATCTACTATTTTCCACTTTGCTAATGGCTTGTGGTCATTTGCTGTCAG 497
BSNT_04150___ 498 ATGGGGCATCACGGTAACGCCTCGTTCTCAAAGAATTTCGACATACGTTA 547
.|||||.||.||.||..|.||.||.||.||||||||.||.|||||.||.|
BPUM_2503___s 498 CTGGGGAATTACTGTTTCACCACGCTCACAAAGAATCTCCACATATGTGA 547
BSNT_04150___ 548 CGCTGAT----TATTTTTGTTGCACTGTCATACGTAGGCTTAAAAGCGAT 593
| || |||.|||.|.||.||.|||||.|||||..|||.|||.||
BPUM_2503___s 548 C----ATTAGGTATATTTATAGCGCTTTCATATGTAGGGCTAAGAGCAAT 593
BSNT_04150___ 594 TTTCGCATTTGTTTAA 609
||||||.|||||||||
BPUM_2503___s 594 TTTCGCTTTTGTTTAA 609
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.