Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04149 and BPUM_2502

See Amino acid alignment / Visit BSNT_04149 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:40
# Commandline: needle
#    -asequence dna-align/BSNT_04149___sdhA.1.24716.seq
#    -bsequence dna-align/BPUM_2502___sdhA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04149___sdhA-BPUM_2502___sdhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04149___sdhA-BPUM_2502___sdhA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04149___sdhA
# 2: BPUM_2502___sdhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1785
# Identity:    1402/1785 (78.5%)
# Similarity:  1402/1785 (78.5%)
# Gaps:          48/1785 ( 2.7%)
# Score: 5475.0
# 
#
#=======================================

BSNT_04149___      1 ATGAGTCAATCAAGCATTATCGTAGTCGGCGGGGGTCTT-GCCGGCCTCA     49
                     ||||||.|.||.|||||.|||||.|||||.||.|| ||| ||.||.||||
BPUM_2502___s      1 ATGAGTAATTCTAGCATCATCGTTGTCGGAGGCGG-CTTAGCTGGTCTCA     49

BSNT_04149___     50 TGGCGACAATTAAAGCAGCGGAATCAGGAATGGCGGTTAAGCTGTTTTCC     99
                     ||||.||.|||||||||||.|||.|.||||..||.|||||.||.|||||.
BPUM_2502___s     50 TGGCAACTATTAAAGCAGCAGAAGCGGGAACAGCTGTTAAACTATTTTCA     99

BSNT_04149___    100 ATCGTTCCTGTCAAACGTTCTCATTCGGTTTGTGCGCAAGGCGGCATAAA    149
                     |||||.|||||.||||||||.|||||.||.|||||.||.|||||.||.||
BPUM_2502___s    100 ATCGTACCTGTAAAACGTTCGCATTCCGTATGTGCACAGGGCGGAATCAA    149

BSNT_04149___    150 CGGAGCGGTCAATACAAAAGGGGAAGGTGACTCTCCGTGGGAACATTTTG    199
                     |||||||||.|||||||||||.|||||.||.||.||.|..||.|||||||
BPUM_2502___s    150 CGGAGCGGTAAATACAAAAGGTGAAGGGGATTCACCTTATGAGCATTTTG    199

BSNT_04149___    200 ATGACACGGTATACGGGGGAGACTTTCTT-GCCAACCAGCCGCCGGTCAA    248
                     |||||||||||||.||.|||||| ||||| ||||||||||||||.||.||
BPUM_2502___s    200 ATGACACGGTATATGGTGGAGAC-TTCTTAGCCAACCAGCCGCCAGTAAA    248

BSNT_04149___    249 GGCGATGTGTGAAGCGGCGCCTTCGATCATCCACTTATTAGACCGGATGG    298
                     |||.|||||||||||.|||||.||.||.|||||||||.|.||.|||||||
BPUM_2502___s    249 GGCAATGTGTGAAGCAGCGCCGTCCATTATCCACTTACTTGATCGGATGG    298

BSNT_04149___    299 GCGTCATGTTTAACCGGACGCCTGAAGGCCTGCTTGATTTCCGCCGATTC    348
                     |.||.|||||||||.|.||.||.||.||..|..|.||.||||||||.|||
BPUM_2502___s    299 GTGTGATGTTTAACAGAACACCAGAGGGATTATTGGACTTCCGCCGCTTC    348

BSNT_04149___    349 GGGGGTACACAGCACCACAGAACTGCTTATGCTGGTGCGACGACGGGACA    398
                     |||||.||||||||||||.|.||.||.|.||||||.||.||.||.||.||
BPUM_2502___s    349 GGGGGAACACAGCACCACCGTACAGCATTTGCTGGAGCTACAACAGGTCA    398

BSNT_04149___    399 GCAGCTGCTTTACGCACTGGACGAGCAAGTGCGCAGATACGAAGTTGCGG    448
                     ||||.|..|.||.|||||.||.|||||.||.|||.|.||.|||||.||.|
BPUM_2502___s    399 GCAGTTATTATATGCACTTGATGAGCAGGTTCGCCGCTATGAAGTAGCAG    448

BSNT_04149___    449 GTCTGGTCACAAAATACGAAGGTTGGGAATTCCTTGGCGCTGTTTTAGAT    498
                     |.||.|||||.|||||.|||||.||||||||||||||||||||.||||||
BPUM_2502___s    449 GGCTTGTCACGAAATATGAAGGCTGGGAATTCCTTGGCGCTGTGTTAGAT    498

BSNT_04149___    499 GATGA--CAGAACCTGCCGCGGAATTGTTGCACAAAACCTGACAAACATG    546
                     ||.||  .||.|  |||||.||.|||||.||.||.|||.||||.|..|||
BPUM_2502___s    499 GACGAGGAAGTA--TGCCGAGGCATTGTCGCTCAGAACTTGACGACAATG    546

BSNT_04149___    547 CAAATTGAATCTTTCCGTTCAGACGCTGTCATTATGGCGACGGGCGGACC    596
                     .||||||||||.|||||||||||.||.||.||.|||||.||.|||||.||
BPUM_2502___s    547 GAAATTGAATCCTTCCGTTCAGATGCAGTGATCATGGCAACAGGCGGTCC    596

BSNT_04149___    597 GGGAATCATCTTTGGAAAATCAACGAACTCCATGATTAATACAGGATCTG    646
                     .||||||.|.||.|||||||||||||||||||||||.|||||.|||||||
BPUM_2502___s    597 TGGAATCGTGTTCGGAAAATCAACGAACTCCATGATCAATACTGGATCTG    646

BSNT_04149___    647 CTGCATCAATCGTTTATCAGCAGGGAGCGTATTATGCAAACGGAGAATTC    696
                     |||||||.|||||.||||||||.||.||..||||.|||||.|||||||||
BPUM_2502___s    647 CTGCATCCATCGTCTATCAGCAAGGGGCTCATTACGCAAATGGAGAATTC    696

BSNT_04149___    697 ATTCAAATCCACCCGACAGCCATACCGGGCGATGACAAATTAAGACTGAT    746
                     ||||||||.|||||.|||||.||.||.||.||||||||..|..|.||.||
BPUM_2502___s    697 ATTCAAATTCACCCAACAGCGATCCCTGGAGATGACAAGCTTCGTCTCAT    746

BSNT_04149___    747 GAGTGAATCAGCGCGTGGTGAAGGCGGTCGCGTGTGGACATATAAAGACG    796
                     |||||||||.||.||||||||||||||.||.||.||||||||||||||||
BPUM_2502___s    747 GAGTGAATCGGCTCGTGGTGAAGGCGGACGTGTTTGGACATATAAAGACG    796

BSNT_04149___    797 GCAAACCTTGGTATTTCCTGGAGGAAAAATATCCGGCATACGGAAACCTG    846
                     |.||.||||||||.|||||.||||||||||||||.||||||||||||||.
BPUM_2502___s    797 GGAAGCCTTGGTACTTCCTAGAGGAAAAATATCCAGCATACGGAAACCTT    846

BSNT_04149___    847 GTGCCGCGTGATATTGCGACACGCGAAATATTTGATGTGTGTGTGAACCA    896
                     ||.||.||||||||.||.||.||.|||||.||.||.||.|||||..|.||
BPUM_2502___s    847 GTACCACGTGATATCGCAACGCGTGAAATTTTCGACGTATGTGTCGAGCA    896

BSNT_04149___    897 GAAGCTCGGCATTAACGGTGAAAACATGGTATATCTCGATCTGTCTCATA    946
                     .|||||.|||||.|||||.||.||||||||||||||||||||.|||||||
BPUM_2502___s    897 AAAGCTTGGCATCAACGGAGAGAACATGGTATATCTCGATCTTTCTCATA    946

BSNT_04149___    947 AAGATCCGAAAGAGCTTGATATTAAGCTTGGCGGCATCATTGAGATTTAC    996
                     |||||||||||||.|||||||||||.|||||||||||||||||.||.||.
BPUM_2502___s    947 AAGATCCGAAAGAACTTGATATTAAACTTGGCGGCATCATTGAAATCTAT    996

BSNT_04149___    997 GAGAAATTCATGGGAGACGACCCGCGTAAGCTTCCAATGAAAATCTTCCC   1046
                     ||.|||||||||||.||.|||||.||||||||||||||||||||.|||||
BPUM_2502___s    997 GAAAAATTCATGGGTGATGACCCACGTAAGCTTCCAATGAAAATTTTCCC   1046

BSNT_04149___   1047 GGCGGTCCATTATTCTATGGGCGGTTTATGGGTGGATTACGATCAAATGA   1096
                     .||.||.|||||.||.||||||||.||||||||.|||||.||||||||||
BPUM_2502___s   1047 TGCTGTTCATTACTCAATGGGCGGATTATGGGTTGATTATGATCAAATGA   1096

BSNT_04149___   1097 CAAACATCCCTGGACTGTTTGCGGCTGGGGAATGTGATTATTCTATGCAC   1146
                     ||||.|||...||.||.||.||.||.||.|||||||||||.|||||||||
BPUM_2502___s   1097 CAAATATCAAAGGTCTATTCGCTGCCGGAGAATGTGATTACTCTATGCAC   1146

BSNT_04149___   1147 GGCGGCAACCG-CTTGGGAGCGAACTCCTTGCTGTCTGCGATTTACGGAG   1195
                     |||||.|||.| ||| ||.||.|||||..||||.||.||.||||||||.|
BPUM_2502___s   1147 GGCGGAAACAGACTT-GGTGCAAACTCACTGCTTTCAGCCATTTACGGCG   1195

BSNT_04149___   1196 GCATGGTGGCCGGACCGAATGCGGTGAAATATGTAAACGG-CTTAGAATC   1244
                     |.|||||.||.|||||.|||||.|||||.||..|.|.||| ||| |||..
BPUM_2502___s   1196 GAATGGTCGCTGGACCAAATGCTGTGAAGTACATTAGCGGTCTT-GAAAA   1244

BSNT_04149___   1245 TTCAGCGGAAGACATGTCTTCATCTTTATTCGAC---GCTCACGTTAAGA   1291
                     .||.|||||||||.|.|||||..|...|||||||   |||   ||.||||
BPUM_2502___s   1245 GTCTGCGGAAGACCTATCTTCTGCAACATTCGACAGTGCT---GTGAAGA   1291

BSNT_04149___   1292 AAGAAGAAGAAAAATGGGCTGACATTATGAGTATGGACGGAACCGAAAAT   1341
                     ||||..|.||.|||||||...|||||.||||.|||||||||||.||||||
BPUM_2502___s   1292 AAGAGCAGGAGAAATGGGACAACATTCTGAGCATGGACGGAACAGAAAAT   1341

BSNT_04149___   1342 GCCTATGTTCTTCACAAAGAGCTCGGTGAGTGGATGACGGCGAACGTAAC   1391
                     ||.||.||.|||||.||||||||.||.||.||||||||||..|||||.||
BPUM_2502___s   1342 GCGTACGTGCTTCATAAAGAGCTTGGAGAATGGATGACGGATAACGTCAC   1391

BSNT_04149___   1392 GGTTGTCCGCCATAATGACAAGCTTTTGAAAACGGATGACAAAATTCAGG   1441
                     .||.||.||..|.||||||||.||.||.|||||.|||.|.||.||..|.|
BPUM_2502___s   1392 AGTCGTTCGTTACAATGACAAACTCTTAAAAACAGATCAGAAGATCGAAG   1441

BSNT_04149___   1442 AGTTAATGGAGCGCTTCAAAAAGATCAACATCAATGACACGACAAAATGG   1491
                     |..||||||||||||.||||.||||||||||||||||.||..|...||||
BPUM_2502___s   1442 AACTAATGGAGCGCTACAAACAGATCAACATCAATGATACAGCTTCATGG   1491

BSNT_04149___   1492 AGCAACCAGGGAGCGATG--TTCACACGCCAGTTCTCA-AACATGCTTCA   1538
                     ||||||||.|  |||.||  ||||||||.||..| |.| ||.||||||||
BPUM_2502___s   1492 AGCAACCAAG--GCGCTGCCTTCACACGTCAACT-TGACAATATGCTTCA   1538

BSNT_04149___   1539 GCTTGCTAGGGTGATTACCCTTGGCGCATACAACCGTAATGAAAGCCGGG   1588
                     .||.||.||.||.|||||..|.||.||.||||||.|.|||||||||||.|
BPUM_2502___s   1539 ACTGGCAAGAGTCATTACGATCGGGGCTTACAACAGGAATGAAAGCCGAG   1588

BSNT_04149___   1589 GCGCCCATTATAAACCGGATTATCCTGAACGTAATGATGATGAATGGCTC   1638
                     ||||.||.||.||||||||.|..||.||..|.||.|||||.||||..||.
BPUM_2502___s   1589 GCGCACACTACAAACCGGACTTCCCAGAGAGAAACGATGAAGAATTCCTA   1638

BSNT_04149___   1639 AAAACAACAATGGCTAAACATGTAAGCCCGT------------ATGAAGC   1676
                     ||||||||.|||||||            |||            ||.||..
BPUM_2502___s   1639 AAAACAACGATGGCTA------------CGTTCAAAGGAAAAAATCAAAA   1676

BSNT_04149___   1677 GCCGGAATTTGAGTATCAGGATGTCGATGTATCACTGATAACGCCTCGGA   1726
                     |||.|.|||..|.|||.||||.|||||||||||..|.||..|.|||||.|
BPUM_2502___s   1677 GCCTGCATTCCACTATGAGGACGTCGATGTATCGTTAATTGCACCTCGTA   1726

BSNT_04149___   1727 AACGGGATTACTCGAAGAAGAAGGTGGCGAAATAA   1761
                     ||||.||||||||||||||.|||||||.|||||||
BPUM_2502___s   1727 AACGAGATTACTCGAAGAAAAAGGTGGAGAAATAA   1761


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