Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04149 and BPUM_2502
See
Amino acid alignment /
Visit
BSNT_04149 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:40
# Commandline: needle
# -asequence dna-align/BSNT_04149___sdhA.1.24716.seq
# -bsequence dna-align/BPUM_2502___sdhA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04149___sdhA-BPUM_2502___sdhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04149___sdhA-BPUM_2502___sdhA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04149___sdhA
# 2: BPUM_2502___sdhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1785
# Identity: 1402/1785 (78.5%)
# Similarity: 1402/1785 (78.5%)
# Gaps: 48/1785 ( 2.7%)
# Score: 5475.0
#
#
#=======================================
BSNT_04149___ 1 ATGAGTCAATCAAGCATTATCGTAGTCGGCGGGGGTCTT-GCCGGCCTCA 49
||||||.|.||.|||||.|||||.|||||.||.|| ||| ||.||.||||
BPUM_2502___s 1 ATGAGTAATTCTAGCATCATCGTTGTCGGAGGCGG-CTTAGCTGGTCTCA 49
BSNT_04149___ 50 TGGCGACAATTAAAGCAGCGGAATCAGGAATGGCGGTTAAGCTGTTTTCC 99
||||.||.|||||||||||.|||.|.||||..||.|||||.||.|||||.
BPUM_2502___s 50 TGGCAACTATTAAAGCAGCAGAAGCGGGAACAGCTGTTAAACTATTTTCA 99
BSNT_04149___ 100 ATCGTTCCTGTCAAACGTTCTCATTCGGTTTGTGCGCAAGGCGGCATAAA 149
|||||.|||||.||||||||.|||||.||.|||||.||.|||||.||.||
BPUM_2502___s 100 ATCGTACCTGTAAAACGTTCGCATTCCGTATGTGCACAGGGCGGAATCAA 149
BSNT_04149___ 150 CGGAGCGGTCAATACAAAAGGGGAAGGTGACTCTCCGTGGGAACATTTTG 199
|||||||||.|||||||||||.|||||.||.||.||.|..||.|||||||
BPUM_2502___s 150 CGGAGCGGTAAATACAAAAGGTGAAGGGGATTCACCTTATGAGCATTTTG 199
BSNT_04149___ 200 ATGACACGGTATACGGGGGAGACTTTCTT-GCCAACCAGCCGCCGGTCAA 248
|||||||||||||.||.|||||| ||||| ||||||||||||||.||.||
BPUM_2502___s 200 ATGACACGGTATATGGTGGAGAC-TTCTTAGCCAACCAGCCGCCAGTAAA 248
BSNT_04149___ 249 GGCGATGTGTGAAGCGGCGCCTTCGATCATCCACTTATTAGACCGGATGG 298
|||.|||||||||||.|||||.||.||.|||||||||.|.||.|||||||
BPUM_2502___s 249 GGCAATGTGTGAAGCAGCGCCGTCCATTATCCACTTACTTGATCGGATGG 298
BSNT_04149___ 299 GCGTCATGTTTAACCGGACGCCTGAAGGCCTGCTTGATTTCCGCCGATTC 348
|.||.|||||||||.|.||.||.||.||..|..|.||.||||||||.|||
BPUM_2502___s 299 GTGTGATGTTTAACAGAACACCAGAGGGATTATTGGACTTCCGCCGCTTC 348
BSNT_04149___ 349 GGGGGTACACAGCACCACAGAACTGCTTATGCTGGTGCGACGACGGGACA 398
|||||.||||||||||||.|.||.||.|.||||||.||.||.||.||.||
BPUM_2502___s 349 GGGGGAACACAGCACCACCGTACAGCATTTGCTGGAGCTACAACAGGTCA 398
BSNT_04149___ 399 GCAGCTGCTTTACGCACTGGACGAGCAAGTGCGCAGATACGAAGTTGCGG 448
||||.|..|.||.|||||.||.|||||.||.|||.|.||.|||||.||.|
BPUM_2502___s 399 GCAGTTATTATATGCACTTGATGAGCAGGTTCGCCGCTATGAAGTAGCAG 448
BSNT_04149___ 449 GTCTGGTCACAAAATACGAAGGTTGGGAATTCCTTGGCGCTGTTTTAGAT 498
|.||.|||||.|||||.|||||.||||||||||||||||||||.||||||
BPUM_2502___s 449 GGCTTGTCACGAAATATGAAGGCTGGGAATTCCTTGGCGCTGTGTTAGAT 498
BSNT_04149___ 499 GATGA--CAGAACCTGCCGCGGAATTGTTGCACAAAACCTGACAAACATG 546
||.|| .||.| |||||.||.|||||.||.||.|||.||||.|..|||
BPUM_2502___s 499 GACGAGGAAGTA--TGCCGAGGCATTGTCGCTCAGAACTTGACGACAATG 546
BSNT_04149___ 547 CAAATTGAATCTTTCCGTTCAGACGCTGTCATTATGGCGACGGGCGGACC 596
.||||||||||.|||||||||||.||.||.||.|||||.||.|||||.||
BPUM_2502___s 547 GAAATTGAATCCTTCCGTTCAGATGCAGTGATCATGGCAACAGGCGGTCC 596
BSNT_04149___ 597 GGGAATCATCTTTGGAAAATCAACGAACTCCATGATTAATACAGGATCTG 646
.||||||.|.||.|||||||||||||||||||||||.|||||.|||||||
BPUM_2502___s 597 TGGAATCGTGTTCGGAAAATCAACGAACTCCATGATCAATACTGGATCTG 646
BSNT_04149___ 647 CTGCATCAATCGTTTATCAGCAGGGAGCGTATTATGCAAACGGAGAATTC 696
|||||||.|||||.||||||||.||.||..||||.|||||.|||||||||
BPUM_2502___s 647 CTGCATCCATCGTCTATCAGCAAGGGGCTCATTACGCAAATGGAGAATTC 696
BSNT_04149___ 697 ATTCAAATCCACCCGACAGCCATACCGGGCGATGACAAATTAAGACTGAT 746
||||||||.|||||.|||||.||.||.||.||||||||..|..|.||.||
BPUM_2502___s 697 ATTCAAATTCACCCAACAGCGATCCCTGGAGATGACAAGCTTCGTCTCAT 746
BSNT_04149___ 747 GAGTGAATCAGCGCGTGGTGAAGGCGGTCGCGTGTGGACATATAAAGACG 796
|||||||||.||.||||||||||||||.||.||.||||||||||||||||
BPUM_2502___s 747 GAGTGAATCGGCTCGTGGTGAAGGCGGACGTGTTTGGACATATAAAGACG 796
BSNT_04149___ 797 GCAAACCTTGGTATTTCCTGGAGGAAAAATATCCGGCATACGGAAACCTG 846
|.||.||||||||.|||||.||||||||||||||.||||||||||||||.
BPUM_2502___s 797 GGAAGCCTTGGTACTTCCTAGAGGAAAAATATCCAGCATACGGAAACCTT 846
BSNT_04149___ 847 GTGCCGCGTGATATTGCGACACGCGAAATATTTGATGTGTGTGTGAACCA 896
||.||.||||||||.||.||.||.|||||.||.||.||.|||||..|.||
BPUM_2502___s 847 GTACCACGTGATATCGCAACGCGTGAAATTTTCGACGTATGTGTCGAGCA 896
BSNT_04149___ 897 GAAGCTCGGCATTAACGGTGAAAACATGGTATATCTCGATCTGTCTCATA 946
.|||||.|||||.|||||.||.||||||||||||||||||||.|||||||
BPUM_2502___s 897 AAAGCTTGGCATCAACGGAGAGAACATGGTATATCTCGATCTTTCTCATA 946
BSNT_04149___ 947 AAGATCCGAAAGAGCTTGATATTAAGCTTGGCGGCATCATTGAGATTTAC 996
|||||||||||||.|||||||||||.|||||||||||||||||.||.||.
BPUM_2502___s 947 AAGATCCGAAAGAACTTGATATTAAACTTGGCGGCATCATTGAAATCTAT 996
BSNT_04149___ 997 GAGAAATTCATGGGAGACGACCCGCGTAAGCTTCCAATGAAAATCTTCCC 1046
||.|||||||||||.||.|||||.||||||||||||||||||||.|||||
BPUM_2502___s 997 GAAAAATTCATGGGTGATGACCCACGTAAGCTTCCAATGAAAATTTTCCC 1046
BSNT_04149___ 1047 GGCGGTCCATTATTCTATGGGCGGTTTATGGGTGGATTACGATCAAATGA 1096
.||.||.|||||.||.||||||||.||||||||.|||||.||||||||||
BPUM_2502___s 1047 TGCTGTTCATTACTCAATGGGCGGATTATGGGTTGATTATGATCAAATGA 1096
BSNT_04149___ 1097 CAAACATCCCTGGACTGTTTGCGGCTGGGGAATGTGATTATTCTATGCAC 1146
||||.|||...||.||.||.||.||.||.|||||||||||.|||||||||
BPUM_2502___s 1097 CAAATATCAAAGGTCTATTCGCTGCCGGAGAATGTGATTACTCTATGCAC 1146
BSNT_04149___ 1147 GGCGGCAACCG-CTTGGGAGCGAACTCCTTGCTGTCTGCGATTTACGGAG 1195
|||||.|||.| ||| ||.||.|||||..||||.||.||.||||||||.|
BPUM_2502___s 1147 GGCGGAAACAGACTT-GGTGCAAACTCACTGCTTTCAGCCATTTACGGCG 1195
BSNT_04149___ 1196 GCATGGTGGCCGGACCGAATGCGGTGAAATATGTAAACGG-CTTAGAATC 1244
|.|||||.||.|||||.|||||.|||||.||..|.|.||| ||| |||..
BPUM_2502___s 1196 GAATGGTCGCTGGACCAAATGCTGTGAAGTACATTAGCGGTCTT-GAAAA 1244
BSNT_04149___ 1245 TTCAGCGGAAGACATGTCTTCATCTTTATTCGAC---GCTCACGTTAAGA 1291
.||.|||||||||.|.|||||..|...||||||| ||| ||.||||
BPUM_2502___s 1245 GTCTGCGGAAGACCTATCTTCTGCAACATTCGACAGTGCT---GTGAAGA 1291
BSNT_04149___ 1292 AAGAAGAAGAAAAATGGGCTGACATTATGAGTATGGACGGAACCGAAAAT 1341
||||..|.||.|||||||...|||||.||||.|||||||||||.||||||
BPUM_2502___s 1292 AAGAGCAGGAGAAATGGGACAACATTCTGAGCATGGACGGAACAGAAAAT 1341
BSNT_04149___ 1342 GCCTATGTTCTTCACAAAGAGCTCGGTGAGTGGATGACGGCGAACGTAAC 1391
||.||.||.|||||.||||||||.||.||.||||||||||..|||||.||
BPUM_2502___s 1342 GCGTACGTGCTTCATAAAGAGCTTGGAGAATGGATGACGGATAACGTCAC 1391
BSNT_04149___ 1392 GGTTGTCCGCCATAATGACAAGCTTTTGAAAACGGATGACAAAATTCAGG 1441
.||.||.||..|.||||||||.||.||.|||||.|||.|.||.||..|.|
BPUM_2502___s 1392 AGTCGTTCGTTACAATGACAAACTCTTAAAAACAGATCAGAAGATCGAAG 1441
BSNT_04149___ 1442 AGTTAATGGAGCGCTTCAAAAAGATCAACATCAATGACACGACAAAATGG 1491
|..||||||||||||.||||.||||||||||||||||.||..|...||||
BPUM_2502___s 1442 AACTAATGGAGCGCTACAAACAGATCAACATCAATGATACAGCTTCATGG 1491
BSNT_04149___ 1492 AGCAACCAGGGAGCGATG--TTCACACGCCAGTTCTCA-AACATGCTTCA 1538
||||||||.| |||.|| ||||||||.||..| |.| ||.||||||||
BPUM_2502___s 1492 AGCAACCAAG--GCGCTGCCTTCACACGTCAACT-TGACAATATGCTTCA 1538
BSNT_04149___ 1539 GCTTGCTAGGGTGATTACCCTTGGCGCATACAACCGTAATGAAAGCCGGG 1588
.||.||.||.||.|||||..|.||.||.||||||.|.|||||||||||.|
BPUM_2502___s 1539 ACTGGCAAGAGTCATTACGATCGGGGCTTACAACAGGAATGAAAGCCGAG 1588
BSNT_04149___ 1589 GCGCCCATTATAAACCGGATTATCCTGAACGTAATGATGATGAATGGCTC 1638
||||.||.||.||||||||.|..||.||..|.||.|||||.||||..||.
BPUM_2502___s 1589 GCGCACACTACAAACCGGACTTCCCAGAGAGAAACGATGAAGAATTCCTA 1638
BSNT_04149___ 1639 AAAACAACAATGGCTAAACATGTAAGCCCGT------------ATGAAGC 1676
||||||||.||||||| ||| ||.||..
BPUM_2502___s 1639 AAAACAACGATGGCTA------------CGTTCAAAGGAAAAAATCAAAA 1676
BSNT_04149___ 1677 GCCGGAATTTGAGTATCAGGATGTCGATGTATCACTGATAACGCCTCGGA 1726
|||.|.|||..|.|||.||||.|||||||||||..|.||..|.|||||.|
BPUM_2502___s 1677 GCCTGCATTCCACTATGAGGACGTCGATGTATCGTTAATTGCACCTCGTA 1726
BSNT_04149___ 1727 AACGGGATTACTCGAAGAAGAAGGTGGCGAAATAA 1761
||||.||||||||||||||.|||||||.|||||||
BPUM_2502___s 1727 AACGAGATTACTCGAAGAAAAAGGTGGAGAAATAA 1761
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.