Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04148 and BPUM_2501

See Amino acid alignment / Visit BSNT_04148 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:39
# Commandline: needle
#    -asequence dna-align/BSNT_04148___sdhB.1.24716.seq
#    -bsequence dna-align/BPUM_2501___sdhB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04148___sdhB-BPUM_2501___sdhB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04148___sdhB-BPUM_2501___sdhB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04148___sdhB
# 2: BPUM_2501___sdhB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 773
# Identity:     601/773 (77.7%)
# Similarity:   601/773 (77.7%)
# Gaps:          19/773 ( 2.5%)
# Score: 2307.5
# 
#
#=======================================

BSNT_04148___      1 ATGAGTGAACAAAAAACCATACGATTTATTATCACACGTCAAGATACAGC     50
                     |||||||||.||||.||.||.|.|||.||.||||||||||||||||||||
BPUM_2501___s      1 ATGAGTGAAAAAAACACGATTCAATTCATAATCACACGTCAAGATACAGC     50

BSNT_04148___     51 CGACAGCACGCCTTACGATGAAGAATTTGAGATTCCATACCGCCCGAATC    100
                     .||..|.|.||||||.|||||||||||.||.||.||.||||||||.|||.
BPUM_2501___s     51 AGATGGAAAGCCTTATGATGAAGAATTCGAAATCCCTTACCGCCCAAATA    100

BSNT_04148___    101 TGAACGTCATTTCCGCTCTGATGGAAATCCGCCGGAATCCGGTTAATGTC    150
                     ||||||||||||||||.||.||||||||..|.|||||.||.||.|||...
BPUM_2501___s    101 TGAACGTCATTTCCGCACTCATGGAAATTAGACGGAACCCAGTCAATAAA    150

BSNT_04148___    151 AAAGGTGAGAAGACAACCCCTGTCACATGGGATATGAACTGTCTTGAGGA    200
                     .||||.||.||.|||||..|..|||..||||||||||||||||||||.||
BPUM_2501___s    151 CAAGGGGAAAAAACAACGGCGATCAACTGGGATATGAACTGTCTTGAAGA    200

BSNT_04148___    201 AGTATGCGGCGCATGTTCAATGGTCATAAACGGAAAACCCCGCCAATCTT    250
                     .||.|||||.||.|||||.||||||||.||.|||||.||.|||||.||.|
BPUM_2501___s    201 GGTGTGCGGAGCTTGTTCTATGGTCATTAATGGAAAGCCACGCCAGTCAT    250

BSNT_04148___    251 GCACGGCGCTT-ATCGACCAGCTTGAACAGCCGATCCGTTTAAAACCAAT    299
                     |.||.|| ||| ||.|||.||||.||.||.|||||.|||.|..|.||.||
BPUM_2501___s    251 GTACAGC-CTTGATTGACAAGCTAGAGCAACCGATTCGTCTTCAGCCGAT    299

BSNT_04148___    300 GAAAACATTCCCAGTCGTTCGTGATTTGCAGGTTGATCGCAGCAGAATGT    349
                     |||.||||||||.||.||..|.|||||||||||||||.|.|||.|.||||
BPUM_2501___s    300 GAAGACATTCCCGGTTGTGAGAGATTTGCAGGTTGATAGAAGCCGGATGT    349

BSNT_04148___    350 TTGATTCATTGAAAAAAGTAAAAGCATGGATACCGATTGACGGTACGTAC    399
                     |..||||.||||||||.||.|||||||||.|||||||.||.||.|||||.
BPUM_2501___s    350 TCAATTCCTTGAAAAAGGTGAAAGCATGGGTACCGATCGATGGCACGTAT    399

BSNT_04148___    400 GATTTAGGACCGGGGCCGAGAATGCCGGAAAAACGCCGTCAATGGGCATA    449
                     |||.|.||.||.||.||.||||||||.||.|||...||||||||||||||
BPUM_2501___s    400 GATCTTGGTCCAGGACCAAGAATGCCTGAGAAAAAACGTCAATGGGCATA    449

BSNT_04148___    450 TGAATTATCAAAATGCATGACATGCGGCGTCTGCCTCGAAGCTTGCCCGA    499
                     .||..|.||.|||||.||||||||.|||||.|||||.||||||||.||.|
BPUM_2501___s    450 CGAGCTTTCGAAATGTATGACATGTGGCGTTTGCCTTGAAGCTTGTCCAA    499

BSNT_04148___    500 ATGTGAACAGCAAATCGAAGTTC----ATGGGGCCTGCACCGATGTCGCA    545
                     |.|||||....|||||    |||    |||||.|||||||||.|.|||||
BPUM_2501___s    500 ACGTGAATGATAAATC----TTCCTTTATGGGACCTGCACCGCTTTCGCA    545

BSNT_04148___    546 AGTCCGCCTGTTTAACGCGCATCCGACAGGCGCCATGAATAAATCTGAAC    595
                     |||.||.||.||||||||.|||||||||||.||.||||||||.|||||.|
BPUM_2501___s    546 AGTTCGTCTATTTAACGCACATCCGACAGGTGCGATGAATAAGTCTGACC    595

BSNT_04148___    596 GATTAGAAGCATTAATGGATGAAGGCGGCCTTGCAGATTGCGGCAACTCG    645
                     |..||||||.|.|.||||..||.||.||||||||..|.|||||.|||||.
BPUM_2501___s    596 GTCTAGAAGAAATTATGGGGGACGGTGGCCTTGCGAACTGCGGGAACTCC    645

BSNT_04148___    646 CAAAACTGTGTTCAATCCTGTCCGAAGGGGATTCCGCTTACCACTTCGAT    695
                     |||||||||||.||.||.||||||||.||.||.|||||.||.||.||.||
BPUM_2501___s    646 CAAAACTGTGTGCAGTCTTGTCCGAAAGGAATCCCGCTGACAACATCAAT    695

BSNT_04148___    696 TGCAGC-CTTGAATAGAGATACAAACTTACAAGCGTTCCGCAATTTCTTC    744
                     |||.|| ||| |||.|||||||||..||||||||.|||||.|||||||||
BPUM_2501___s    696 TGCTGCACTT-AATCGAGATACAACTTTACAAGCATTCCGTAATTTCTTC    744

BSNT_04148___    745 GGAAGCGA-----CAGAGTATAA    762
                     ||||||||     ||||  ||||
BPUM_2501___s    745 GGAAGCGATCACGCAGA--ATAA    765


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04148 and BPUM_2501

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
