Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04146 and BPUM_2500
See
Amino acid alignment /
Visit
BSNT_04146 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:39
# Commandline: needle
# -asequence dna-align/BSNT_04146___ysmA.1.24716.seq
# -bsequence dna-align/BPUM_2500___ysmA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04146___ysmA-BPUM_2500___ysmA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04146___ysmA-BPUM_2500___ysmA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04146___ysmA
# 2: BPUM_2500___ysmA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 509
# Identity: 313/509 (61.5%)
# Similarity: 313/509 (61.5%)
# Gaps: 112/509 (22.0%)
# Score: 882.0
#
#
#=======================================
BSNT_04146___ 1 ATGAAGCTTCCCG-CTTATATTGATATGCCGTTTCAAGAATGGAAAACAT 49
.|| ||.||.||| |.||||||||....||||||.||||.||||...|.|
BPUM_2500___y 1 GTG-AGATTGCCGTCATATATTGAAGAACCGTTTGAAGAGTGGAGGGCGT 49
BSNT_04146___ 50 CCTTT---TCTTTTTTC--AATGAGGTATCCGTAAGATTTTCCGAGACAG 94
||||| |.||.|.|| ||.|| |.||..|.|||||.||.||.|
BPUM_2500___y 50 CCTTTCGATTTTATGTCGAAACGA-----CTGTTCGTTTTTCAGAAACGG 94
BSNT_04146___ 95 ACATGTTTGGGCATATGAATAATGTAACCCCTTTTATATATTTTGAGGAG 144
|.||||||||.||||||||.|||||.|||||||||.|.||||||||.|||
BPUM_2500___y 95 ATATGTTTGGCCATATGAACAATGTTACCCCTTTTGTGTATTTTGAAGAG 144
BSNT_04146___ 145 GCGCGGATTTCTTATTTTAAAAAGCTGAATA-----TGATGAGTGAAAAC 189
|||||.|||.|.|.||||.|||| ||.| ||.||| .||||
BPUM_2500___y 145 GCGCGCATTGCCTTTTTTCAAAA----AACAGGCATTGTTGA---TAAAC 187
BSNT_04146___ 190 -----AAAC---------AGACCATGACAGTCGTGGCAAGCCAGCAATGC 225
|||| |.||||||||||||||.||.|.||.||||||.
BPUM_2500___y 188 GGATGAAACGTGTGAGAGAAACCATGACAGTCGTCGCTAACCTGCAATGT 237
BSNT_04146___ 226 GATTATTTGCGCCAAGTCATGCCTTATGAAGAG-TTG-----------CG 263
||||| || |||.|| |.|.|||| ||| ||
BPUM_2500___y 238 GATTA-------CA--TCAAGC---AGGTAGAGATTGGAGAGAGGCTTCG 275
BSNT_04146___ 264 CATCTATGTGAAA----ACAAGCACAGTCGGC---AGTTCATCTC-TTAC 305
..|.|||||.||| |.||| |||||| ||.||| ||| ||
BPUM_2500___y 276 TGTGTATGTCAAACCTGAGAAG----GTCGGCTCAAGCTCA-CTCATT-- 318
BSNT_04146___ 306 CTTGCACTATCTCGGAGA----GAACCGCGAAGGCGAGCCCTGCTTCACC 351
||| ||.|||.|.||||| ||||.|| || |||||.|||||.||.
BPUM_2500___y 319 CTT-CATTATTTAGGAGAAAATGAACAGC--AG--GAGCCATGCTTTACA 363
BSNT_04146___ 352 GGGGCAGTCGTGATGGTTCA----AGTCTCAAAGGAAAGCGGCAAAGCTG 397
||..|||||...|||||.|| ||| ||.||.|..||||.|.|||
BPUM_2500___y 364 GGCTCAGTCACCATGGTGCAAATTAGT----AAAGACACAGGCACATCTG 409
BSNT_04146___ 398 TCAGCTGGACGGATGAGGAGAAAGAAACGCTTCTTCATA----CA-CGAT 442
||...|..|||||.||.||||||||.||..||| | || |||
BPUM_2500___y 410 TCCCATTTACGGAAGACGAGAAAGAGACATTTC-----AGGCGCAGCGA- 453
BSNT_04146___ 443 AA------- 444
||
BPUM_2500___y 454 AATGAGTAG 462
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.