Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04141 and BPUM_2492
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:39
# Commandline: needle
# -asequence dna-align/BSNT_04141___gerM.1.24716.seq
# -bsequence dna-align/BPUM_2492___gerM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04141___gerM-BPUM_2492___gerM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04141___gerM-BPUM_2492___gerM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04141___gerM
# 2: BPUM_2492___gerM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1151
# Identity: 771/1151 (67.0%)
# Similarity: 771/1151 (67.0%)
# Gaps: 139/1151 (12.1%)
# Score: 2470.0
#
#
#=======================================
BSNT_04141___ 1 ATGCTGAAAAAAGGACCTGCAGTCATTGGTGCCACTTGTCTCACCTCTGC 50
|||||||||||||||.||.||| || |.||..||.|||.||.|.||.||
BPUM_2492___g 1 ATGCTGAAAAAAGGATCTACAG-CA--GCTGTGACGTGTATCGCGTCAGC 47
BSNT_04141___ 51 CTTGCTTTTATCCGGATGCGGTTTGTTTCAATCTGATAAGGC---AGCCG 97
|.|||||||.||.||||||||.|||||||||.|.||..|.|| |.|.|
BPUM_2492___g 48 CATGCTTTTGTCAGGATGCGGATTGTTTCAAACAGACCAAGCGAAAACAG 97
BSNT_04141___ 98 AGGAAATTGATCCGCCTCAAGACGTTACATTCGTGAACGATGAAGCGGGT 147
|| |||||.|||||.|||.||||.||||..|||||.|||
BPUM_2492___g 98 AG---ATTGACCCGCCACAAAACGTCACATATGTGAAAGAT--------- 135
BSNT_04141___ 148 GCCAATTCAAATACAACAGCAGCCAAAAAAACAG--AAAG--TGAAAA-A 192
||| |.||.||..|||.|||||| |||| .||||| |
BPUM_2492___g 136 ---------AAT---AAAGAAGATAAACAAACAGCCAAAGAAGGAAAAGA 173
BSNT_04141___ 193 AGCGATACCGCA-AAAGCGGATCAAGCCTCATCTACTGTTATGAGGGAGC 241
||.|| | ||.||.|| |||.||.|||||.||..
BPUM_2492___g 174 AGAGA------AGAAGGCAGA------------TACAGTCATGAGAGAAT 205
BSNT_04141___ 242 TTTATCTCATTGATAAAAACGGATATGTTGTTGCGCAAACGCTGCCTCTC 291
|.|||.|.||||||||||||||.|||||.||..|.|||.|..|.||.||.
BPUM_2492___g 206 TATATTTAATTGATAAAAACGGGTATGTCGTCTCTCAATCCATTCCACTA 255
BSNT_04141___ 292 CCTAAAAGTGAGAGCACG-GCTAAGCAGGCGCTTGAATACCTCGTACAGG 340
||.||||.||| ||.|.| ||.||.||..|.||||||||.||||||.|.|
BPUM_2492___g 256 CCGAAAAATGA-AGGAAGTGCCAAACAAACCCTTGAATATCTCGTAGACG 304
BSNT_04141___ 341 GCGGGCCTGTGTCTGAAATTC-TTCCGAATGGCTTCAGAGCTGTATTGCC 389
|.||.||..|.|| |||..|| |.||.|||||.|||.|.|||||.|||||
BPUM_2492___g 305 GAGGACCGATTTC-GAATCTCATGCCAAATGGATTCCGGGCTGTTTTGCC 353
BSNT_04141___ 390 GGCTGACACCACCGTTAAC-GTTGACATCAAAAAAGATGGAACCGCGATA 438
|||.|||||.|.|| ||.| ||.||||| .|||||.|||||.||..||
BPUM_2492___g 354 GGCCGACACGAACG-TATCTGTCGACAT---TAAAGACGGAACAGCCGTA 399
BSNT_04141___ 439 GCTGATTTCTCTAATGAGTTCAAAAATTATAAGAAAGAGGACGAACAGAA 488
|..|||||.||.|||||.||||||||.|||||.|||||.||.||||||..
BPUM_2492___g 400 GTGGATTTTTCAAATGAATTCAAAAACTATAAAAAAGAAGATGAACAGCG 449
BSNT_04141___ 489 AATCGTTCAATCTGTGACGTGGACGCTGACGCAATTTAGTTCGATAGATA 538
.|||.|||||||.||.||.||||||.|.||.||.|||..|||..|.|..|
BPUM_2492___g 450 TATCCTTCAATCGGTCACTTGGACGTTAACACAGTTTGATTCTGTCGCCA 499
BSNT_04141___ 539 AAGTGAAGCTGAGAATAAACGGGCATGAACTGAAGGAGATGCCTGTAGGA 588
||||.||..|||.|||.||.||.||||||.|.||.||.|||||||| ||
BPUM_2492___g 500 AAGTCAAATTGAAAATGAATGGTCATGAATTAAAAGAAATGCCTGT--GA 547
BSNT_04141___ 589 --GGGACGCCGATCTCAGATGATTTAAGCCGCAAAGACGGCATTAAT-TT 635
||.||.|||||.|||||||||||||||.|..|||||||.|||||| ||
BPUM_2492___g 548 ATGGTACACCGATTTCAGATGATTTAAGCAGAGAAGACGGTATTAATATT 597
BSNT_04141___ 636 GGAAACA-------GCCGGTGTAAATGATCTCACTGCTACCCATCCGCTG 678
.|.|| ||||.|| |.||||..||| ||..|.||..||
BPUM_2492___g 598 --CAGCACGAGGTTGCCGCTG-ATATGACATCA-----ACAAAGCCTGTG 639
BSNT_04141___ 679 ACAGTCTACTACTTGGCGGAA-------AACGAAGACAGTGAATACTACG 721
||.||.||.|||||.||.||| ||| |||| .||.||.|
BPUM_2492___g 640 ACGGTTTATTACTTAGCTGAATCTGATGAAC--AGAC-----GTATTATG 682
BSNT_04141___ 722 TGCCGGTGACGAAACGAATCGACAATTCGGAAAAAGACG---------AC 762
|.||.|||||.||| |...||..|||||||| |.
BPUM_2492___g 683 TTCCTGTGACCAAA---------AGGGCGCCAAAAGACGAGGATGATCAA 723
BSNT_04141___ 763 ATCACAGCAGCCATTAATGAATTGG---CTAAAGGCCCAAGCAAGGTGAG 809
||.||||||||||||.||||..|.| || ||.||||||||....||
BPUM_2492___g 724 ATTACAGCAGCCATTGATGAGCTCGTCTCT---GGACCAAGCAAAAAAAG 770
BSNT_04141___ 810 CGGGCTGTTAACAGACTTCAGTGAAGATGTAAAGCTGGTCAGCAAA---- 855
|....||.|.||||||||...|.|||||||.|||||| ||
BPUM_2492___g 771 CCATTTGCTCACAGACTTTGATCAAGATGTTAAGCTG-------AATGAT 813
BSNT_04141___ 856 ---CCGAAAATCAAAGACGGGCGCGTGACGTTGGATTTCAATCAATCTAT 902
||||||.|.||||||||.|..|||||..|.||||||||..||||.||
BPUM_2492___g 814 ATCCCGAAAGTAAAAGACGGACATGTGACACTTGATTTCAACGAATCCAT 863
BSNT_04141___ 903 ATTCGGCAGCGCCGATGAGAAGACGAAAA--TGATTTCTTCAGAAGTGCT 950
.||.||||||||.|||||.|||| |||| |||||||...|.||||.||
BPUM_2492___g 864 TTTTGGCAGCGCGGATGAAAAGA--AAAAGGTGATTTCACAAAAAGTTCT 911
BSNT_04141___ 951 GAACAGCATTGTGCTGACGTTAACGGAGCAGCCGGATGTAAAAAGCGTCT 1000
..|.|||||||||||.||.|||||.||||..|||||.||.||||||||.|
BPUM_2492___g 912 TGATAGCATTGTGCTCACATTAACAGAGCTACCGGACGTCAAAAGCGTAT 961
BSNT_04141___ 1001 CTGTTAAAGTGAACGGAAAATCAGAGCTTGTAAATGAAAAAGGCGAAAAG 1050
|.|||||.||.|||||.||..|.||.|||||.||.||||||||...|.||
BPUM_2492___g 962 CCGTTAAGGTAAACGGCAAGGCTGAACTTGTGAACGAAAAAGGAACAGAG 1011
BSNT_04141___ 1051 CTCACAGAACCGGTCTCCAGACCTTCTCAAGTGAATACGGGTAGTTTTTA 1100
||.|||.|.||.||.||.|||||....|||||||||||.|||||||||||
BPUM_2492___g 1012 CTGACAAAGCCAGTTTCAAGACCAGAACAAGTGAATACAGGTAGTTTTTA 1061
BSNT_04141___ 1101 A 1101
|
BPUM_2492___g 1062 A 1062
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