Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04138 and BPUM_2490

See Amino acid alignment / Visit BSNT_04138 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:39
# Commandline: needle
#    -asequence dna-align/BSNT_04138___ysnA.1.24716.seq
#    -bsequence dna-align/BPUM_2490___ysnA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04138___ysnA-BPUM_2490___ysnA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04138___ysnA-BPUM_2490___ysnA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04138___ysnA
# 2: BPUM_2490___ysnA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 606
# Identity:     441/606 (72.8%)
# Similarity:   441/606 (72.8%)
# Gaps:          30/606 ( 5.0%)
# Score: 1555.0
# 
#
#=======================================

BSNT_04138___      1 ATGAAAGAAGCAATTATTGCGACACATAATCCGGGAAAAGTGAAGGAATT     50
                     ||||||..|||.||.|||||.||.||.|||.||||.||||.|||.|||||
BPUM_2490___y      1 ATGAAAACAGCCATCATTGCAACGCACAATGCGGGCAAAGCGAAAGAATT     50

BSNT_04138___     51 CAAAGAAATTCTTGAGCCAAGAGGCTATGAT-----GTCAAATCTTTAGC     95
                     |||||..|||||||||||||.||     |||     ||||||.|..||||
BPUM_2490___y     51 CAAAGCCATTCTTGAGCCAAAAG-----GATTCACGGTCAAAACACTAGC     95

BSNT_04138___     96 TGAAATTGGATTTACAGAAGAAATTGAAGAAACAGGCCATACATTTGAAG    145
                     .||.||.||.||||..||||||||||||||||||||.|||||.||.||||
BPUM_2490___y     96 AGACATCGGCTTTATTGAAGAAATTGAAGAAACAGGACATACCTTCGAAG    145

BSNT_04138___    146 AAAATGCCATTCTGAAAGCGGAAGCTGTT---GCCAAAGC-AGTAAACAA    191
                     ||||||||.|..|.|||||.||.||..||   |||||||| .||    .|
BPUM_2490___y    146 AAAATGCCGTCATCAAAGCCGAGGCGATTCAAGCCAAAGCGGGT----GA    191

BSNT_04138___    192 AATGGTGATTGCGGACGACTCCGGTCTATCCATCGATAATCTTGGCGGCA    241
                     ||||||.|||||.|||||.||||||.|.||.||.|||.||||||||||.|
BPUM_2490___y    192 AATGGTCATTGCAGACGATTCCGGTTTGTCGATTGATTATCTTGGCGGAA    241

BSNT_04138___    242 GACCCGGGGTTTATTCAGCCCGCTATGCAGGGGAACAGAAAGACGACCAG    291
                     .|||.||.||.||||||||..|.||.||.||.||.||.|||.|.||....
BPUM_2490___y    242 AACCTGGCGTCTATTCAGCGAGATACGCTGGTGAGCATAAAAATGATGCT    291

BSNT_04138___    292 GCAAATATCGAAAAAGTGCTCAGCGAGCTGAAAGGTATCGAAAAAGAACA    341
                     |..|||.|.|||||||||||.|||||.||..||||.||.|||||||||.|
BPUM_2490___y    292 GAGAATGTAGAAAAAGTGCTGAGCGAACTTCAAGGCATTGAAAAAGAAGA    341

BSNT_04138___    342 GCGCACCGCCCGTTTCCGCTGCGCACTGGCCGTGAGTATTCCCGGTGAGG    391
                     .|||||.||..|.|||.|.||.||.||.||.||.||.||.||.||..|.|
BPUM_2490___y    342 CCGCACAGCTAGATTCAGATGTGCCCTAGCTGTCAGCATACCAGGCAAAG    391

BSNT_04138___    392 AAACAAAAACAGTCGAAGGCCAT--GTTGAAGGGTATATTGCCGAAGAAC    439
                     ||||||||||.||.|||||  ||  ||.|||||.|.|||.||.||.||||
BPUM_2490___y    392 AAACAAAAACGGTAGAAGG--ATCAGTAGAAGGCTTTATCGCAGAGGAAC    439

BSNT_04138___    440 CGAGAGGAGAATATGGCTTTGGCTATGACCCAATCTTTATCGTGAAAGAT    489
                     |.|..||.|||.|||||||.||.||||||||.||.||.|||||.|||||.
BPUM_2490___y    440 CAATCGGCGAAAATGGCTTCGGATATGACCCGATTTTCATCGTCAAAGAC    489

BSNT_04138___    490 AAAGATAAGACAATGGCTGAACTGACAAGTGATGAAAAAAATAAAATCAG    539
                     |||||..||||||||||.|||.|..||...||.||.||||||||.|||||
BPUM_2490___y    490 AAAGACCAGACAATGGCCGAATTATCACCAGAGGAGAAAAATAAGATCAG    539

BSNT_04138___    540 CCATAGGGCTGACGCGCTTAAAAAGCTGTC-TAAGCTTTTGGAGGC----    584
                     ||||.|.||.|.|||||||.|||||||.|| |.| ||..|.||.||    
BPUM_2490___y    540 CCATCGAGCGGTCGCGCTTCAAAAGCTTTCATCA-CTGCTAGACGCAAAT    588

BSNT_04138___    585 --ATAA    588
                       ||||
BPUM_2490___y    589 GAATAA    594


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