Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04136 and BPUM_2489
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:39
# Commandline: needle
# -asequence dna-align/BSNT_04136___ysnB.1.24716.seq
# -bsequence dna-align/BPUM_2489___ysnB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04136___ysnB-BPUM_2489___ysnB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04136___ysnB-BPUM_2489___ysnB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04136___ysnB
# 2: BPUM_2489___ysnB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 547
# Identity: 371/547 (67.8%)
# Similarity: 371/547 (67.8%)
# Gaps: 59/547 (10.8%)
# Score: 1193.0
#
#
#=======================================
BSNT_04136___ 1 ATGAACGTGCTGATTATCAGTGACAGCCATGGGCTTGAAGAAGAACTCCA 50
|||||..|.||.||.||.||||||||.|||||.||...|||.|||||.||
BPUM_2489___y 1 ATGAAGATACTCATCATTAGTGACAGTCATGGACTCACAGACGAACTTCA 50
BSNT_04136___ 51 AACCATTGCGAAACGGCATGAGGCAGAAGTTGATCTCATGATTCATTGCG 100
||..||.||.|||.||||.|.|||.|||||.||..|.||||||||.||||
BPUM_2489___y 51 AATGATCGCCAAAAGGCACGCGGCTGAAGTCGACATGATGATTCACTGCG 100
BSNT_04136___ 101 GGGACTCTGAGCTTGAAACGAGGCATCCTGCATT----GGAGCCTTATGC 146
|.||.||.||.||.|||||||..||.||.|||.| ||| ||...
BPUM_2489___y 101 GAGATTCAGAACTCGAAACGAACCACCCAGCACTCGAAGGA----TACAA 146
BSNT_04136___ 147 GGTTGTAAAAGGCAATTGCGATTTTGCCGGCGATTTTAAGGACGAGCTTC 196
|||.||.|||||.|||||.||.|||...|||||||||.|.||.|||||.|
BPUM_2489___y 147 GGTCGTCAAAGGAAATTGTGACTTTATGGGCGATTTTGAAGAAGAGCTCC 196
BSNT_04136___ 197 TTCT-------GACTGCCGGCTCAAGAAAAATACTGGTCACACACGGCCA 239
|.|| || ||..||| .|||||.||.|..||||.|||||.||
BPUM_2489___y 197 TGCTCCCACTGGA-TGGAGGC---GGAAAACTATTTCTCACTCACGGACA 242
BSNT_04136___ 240 CCTTCACGGTATAAAACAGACCTTG-TTAAACGTATACTATCGTGCAGAG 288
.||.||.||.||.|||||..||||| ||.|| ||.|||||.||||||||.
BPUM_2489___y 243 TCTGCATGGCATCAAACAATCCTTGCTTCAA-GTCTACTACCGTGCAGAA 291
BSNT_04136___ 289 GAGCTCGGAGCGGATGTTATCTGCTTCGGGCATTCGCACATCGCGGGCAG 338
|||||.||.||.||..|.||||||||.||.||.|||||.|||.|.|||||
BPUM_2489___y 292 GAGCTAGGCGCAGACATCATCTGCTTTGGTCACTCGCATATCCCAGGCAG 341
BSNT_04136___ 339 CGAAGTGCTGCGCGGAAAACTGATGATTAACCCAGGCAGCATCCGGCTTC 388
.|||.|||||.|.|||||||||.|.|||||||||||||||.|.|..||.|
BPUM_2489___y 342 TGAACTGCTGAGAGGAAAACTGCTTATTAACCCAGGCAGCGTGCACCTGC 391
BSNT_04136___ 389 CGAGGGTGCGCAGGACAGA---AAGCTATGCTATACTGACATTAGA---A 432
|.||.|||||| |.||| .||||||||||||||||||.|||| |
BPUM_2489___y 392 CAAGAGTGCGC---AAAGAGCGCAGCTATGCTATACTGACACTAGATGGA 438
BSNT_04136___ 433 AATGATGCTG--CG-ACAGTCCGTTTTTAC-GACCAAG--CAGGCAATGA 476
|.|||.|| | || |||.| ||||.|| |||.||| ||.||.||..
BPUM_2489___y 439 AGTGAAGC-GAACGTACAAT---TTTTCACAGACGAAGGTCAAGCCATAC 484
BSNT_04136___ 477 AATTGAGGATCTGCAAAACCGAGTCACACTATGA------------- 510
|| ||.||..|||||...|||||| |..||
BPUM_2489___y 485 AA-----GACCTCGAAAACACTGTCACA-TTGGAAGGTATTTCATAA 525
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