Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06021 and BPUM_2488
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:35
# Commandline: needle
# -asequence dna-align/BSNT_06021___gdh.1.24716.seq
# -bsequence dna-align/BPUM_2488.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06021___gdh-BPUM_2488.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06021___gdh-BPUM_2488.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06021___gdh
# 2: BPUM_2488
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1106
# Identity: 482/1106 (43.6%)
# Similarity: 482/1106 (43.6%)
# Gaps: 487/1106 (44.0%)
# Score: 727.0
#
#
#=======================================
BSNT_06021___ 1 ATGATGAAGAAAAAGAATATAATGA---TAACTGGGGCAA-ATAGCGGAA 46
|||| .|.||||||.|.|||| ||| |..|||| | ||
BPUM_2488 1 ---ATGA--CACAAGAATCTGATGAGCGTAA--GTTGCAACA------AA 37
BSNT_06021___ 47 TCGGCTTTGCGGCGGTAAAGCAATTTCTAACAGAAGGCTTTCGAGTCGTT 96
|| ||.|||.|.| ||||||.| |||| |
BPUM_2488 38 TC---------------AAACAAATGC-AACAGATG--TTTC-------T 62
BSNT_06021___ 97 GGAG----TGGATATTCAA----------------------ACGAATAAA 120
.||| ||.|.|.|||| |||.|.|||
BPUM_2488 63 AGAGAAAATGAAAACTCAACCTTATCCCATGTACCCTAATTACGGAAAAA 112
BSNT_06021___ 121 ATGTCAGAATTTAT--AGTAAA---CAGTGAGTTTCACATGGAAAAAG-C 164
|||.|...||| || ||| ||.|.|.||| ||.||.|.||.| |
BPUM_2488 113 ---TCACACGCTATGAAG-AAATTCCAATTAATTT-ACCTGAACAACGTC 157
BSNT_06021___ 165 AGACTT-GT----CTGATGTCCGGCAGGCGGAATCTTTGATGCTAAAAC- 208
| |||| || |||.||| .|||..|||.|||.||..||
BPUM_2488 158 A-ACTTCGTCATCCTGGTGT---------AGAAGGTTTAATGGTACCACT 197
BSNT_06021___ 209 --------TTGAAAA--------------------------AAGCCGG-- 222
||||||| .|||.||
BPUM_2488 198 TCCAATTATTGAAAATACAAATTACAAAGGGAGTGGTAAGTTAGCGGGAA 247
BSNT_06021___ 223 --------CTGATCCC------GGATA----TTTTGATCAATGCAGC--- 251
||.||..| ||||| |.||| .||||||
BPUM_2488 248 AAGTTGCTCTTATTACAGGAGGGGATAGTGGTATTG----GTGCAGCCGT 293
BSNT_06021___ 252 AGGGAT---------AAGGGAAA----TTACCCCTGTT---CTTGAATTA 285
||..|| ||.||||| |.|| ||| .|||.||..
BPUM_2488 294 AGCTATCGCCTTCGCAAAGGAAAGTGCTGAC----GTTGCGATTGCATAC 339
BSNT_06021___ 286 TCAGCAGAATCATTC-AAAAAGGTCATAGA-------CATTAATCTCA-- 325
|.||..||| || | ||.|.|.|.||||| ||..||||..|
BPUM_2488 340 TTAGATGAA-CA--CGAAGATGCTAATAGAACAAAAGCAAGAATCGAAGA 386
BSNT_06021___ 326 ----CGGCAGC---CTTTATTCTTTCC----------CGAGAT--GCGGC 356
.||||.| .||||||..|.|| |||||| ..|||
BPUM_2488 387 ACTTGGGCAACGTTGTTTATTGATGCCAGGAGACTTGCGAGATAAAAGGC 436
BSNT_06021___ 357 AAGG--------CTGTGGTCAAAGCTGGGAAAAC-------------GAG 385
||.| .|||.|..|||.|....||||| ||.
BPUM_2488 437 AATGTATCACCATTGTAGAGAAAACAATAAAAACCTTCGGGCGTCTAGAC 486
BSNT_06021___ 386 GCTGTAT------------------AA--TCAACATC---GCCT------ 406
|.|.||| || ||||||.| ||||
BPUM_2488 487 GTTCTATGTAACCACGTTGGTATCCAATTTCAACAACCAAGCCTTCTTAA 536
BSNT_06021___ 407 CTGTGTC--CG-------GGCTGA-------------------------- 421
|..|.|| || .|.|||
BPUM_2488 537 CATTATCGACGAACAATTCGATGACACCTTTAAAGTCAACATTTACTCAC 586
BSNT_06021___ 422 ----TGGCAGAGCCTGCGC-GGGCTGCCTATGTGT-CTT----CCAAGCA 461
|..||.|.||.|.|| |.|||.||| | ||| |||.|||
BPUM_2488 587 ATTTTTACACAACCAGAGCAGCGCTTCCT-----TACTTAAAACCAGGCA 631
BSNT_06021___ 462 -TGCGATCATCGG-ACT------GACG-AAGCAGCTCGCTATGGAGTTCG 502
|.|.||.||||| ||| |.|| || || ||||.||.|
BPUM_2488 632 GTTCTATTATCGGCACTTCTTCAGTCGTAA------CG-TATGTAGGT-- 672
BSNT_06021___ 503 GATCAA-AGGGGATCAGGGTGAATA----------------GCATTT--- 532
||.||| |...||| |||.|| |||.||
BPUM_2488 673 GAGCAACAAATGAT-----TGATTATACCGCCACAAAAGGTGCAATTGTT 717
BSNT_06021___ 533 -------CACCGGGCGTGAT----CCAAACAGAAT----TAACGGAAGAG 567
|| ||||.| |.||| ||| |||...||| |
BPUM_2488 718 GGTTGGACA-----CGTGCTTTGGCTAAA---AATGTTGTAAAACAAG-G 758
BSNT_06021___ 568 TATTTTCAAGACGATG-AAATG--GTT-CAGCTGATCAAA----GATAAC 609
.||| || || ||||| ||| |..|||.||.|| || .||
BPUM_2488 759 AATT-------CG-TGTAAATGCCGTTGCTCCTGGTCGAATCTGGA-CAC 799
BSNT_06021___ 610 CA-----TGC-----CCTTCATACGTGGGGGCAG-CCGAGTG-----ATA 643
|| ||| .|||| .||| ||| ||.|||| |||
BPUM_2488 800 CACTCATTGCAGCAAGCTTC--TCGT-----CAGACCAAGTGGGTGTATA 842
BSNT_06021___ 644 TCG-----TT--TCC------------TG--------TATGAAGT----- 661
|.| || ||| || |.||||.|
BPUM_2488 843 TGGAGCATTTAATCCAATGGAACGAGTTGCCCATCCATTTGAACTCGCAC 892
BSNT_06021___ 662 ----ATTTG--------GCTTCTGATGAGGCGCACTTTATTACAGGTTCA 699
||||| |||||||||||..|.|..|||.||||||| |||
BPUM_2488 893 CAACATTTGTTTATCTTGCTTCTGATGATTCTCGTTTTGTTACAGG-TCA 941
BSNT_06021___ 700 AACTTTGTCATAGACGGCGGC---TGGACGGCCGGCAAGAAACTA----- 741
| || ||.|| |.||||||.|| |||.|.|
BPUM_2488 942 A-----GT--------GCTGCATGTTGACGGCGGG---GAATCCACACAT 975
BSNT_06021___ 742 ---TAA 744
|||
BPUM_2488 976 TCCTAA 981
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