Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06029 and BPUM_2484
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:35
# Commandline: needle
# -asequence dna-align/BSNT_06029___yxiD.1.24716.seq
# -bsequence dna-align/BPUM_2484.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06029___yxiD-BPUM_2484.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06029___yxiD-BPUM_2484.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06029___yxiD
# 2: BPUM_2484
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1784
# Identity: 912/1784 (51.1%)
# Similarity: 912/1784 (51.1%)
# Gaps: 616/1784 (34.5%)
# Score: 2479.5
#
#
#=======================================
BSNT_06029___ 0 -------------------------------------------------- 0
BPUM_2484 1 ATGAAAACCATTGACGTCTTTGAGTTGAAGAATGGAATTGACCAAACGCT 50
BSNT_06029___ 0 -------------------------------------------------- 0
BPUM_2484 51 GAACAAGTTGAAGCAGCAATCACAGAATGTGAAATCCCTAGAAAAACAAA 100
BSNT_06029___ 0 -------------------------------------------------- 0
BPUM_2484 101 TCAATCAAATCATCTCCTTAGATAGCGCATTAAAGGGAGAAGCTGGACAA 150
BSNT_06029___ 0 -------------------------------------------------- 0
BPUM_2484 151 GCGATAAAAGATTTTTATATGGAGTGTCATATTCCCTTTTTGCAATTCTT 200
BSNT_06029___ 1 ----ATGTTTATCGACGAATAC-----------AAAAAAGTGCTGAAACA 35
||..|.||.||.|||||| ||||||| |||
BPUM_2484 201 TCAGATCGTCATTGAAGAATACAGCGGTGCGCTAAAAAAG-------ACA 243
BSNT_06029___ 36 AACCCAG------CATGCGATTTCCTCAGTAGAATCTGACTCCCACGGCA 79
|| .||| |||||..|| |||||..|| |.|.|
BPUM_2484 244 AA-ACAGGCACTTCATGCTTTT---------GAATCAAAC-----CCGAA 278
BSNT_06029___ 80 TGATCGCAGAGGCTTT-TCTCTC-------------ACACGATGCGAGA- 114
| ||.||| |||||| |||.|| ||..||
BPUM_2484 279 T---------GGTTTTATCTCTCAATCATTCATTGAACAAGA-GCTTGAC 318
BSNT_06029___ 115 CATGGGGTCAAGCATGCACGAGAAGTGACAGAGCAGCTCACTGA---CGC 161
||.|||.|.||..|.|| ||| ||.||.|| |..|||| ||.
BPUM_2484 319 CAAGGGTTAAAAAAAGC-CGA------ACGGACCA--TTTCTGATATCGT 359
BSNT_06029___ 162 A------GTGAATCGCCAGACATCAGCCATCGG---------CCACATCG 196
| ||||||| .||||||.|| |||.||.|
BPUM_2484 360 ATCAGATGTGAATC---------AAGCCATTGGCAGAGTAAACCATATTG 400
BSNT_06029___ 197 TCAGC--TTGCCGGCAGTCA-----ATGA---TACCTTTTTCC--GAATG 234
| || ||||| ||| |.|| ||| ||||| .||.|
BPUM_2484 401 T--GCATTTGCC-----TCATGTAGACGAATCTAC---TTTCCAACAAAG 440
BSNT_06029___ 235 GAAACAGAA--CA-GGCTGAGCGACTGATTACAGACACCCTGCATAA--- 278
..|.||||| || |||| || ||| |.|.||.||
BPUM_2484 441 CTATCAGAAAGCATGGCT-------TG-----AGA---CGTCCAAAACCA 475
BSNT_06029___ 279 --GCTCT--TTCA---ATTTGACGGCCAGCAAACCCAA--GCACTA---G 316
|.||| |||| |||||||.|..|.|||| ||| |||||| |
BPUM_2484 476 TTGGTCTACTTCATGCATTTGACAGAGAACAAA--CAAGTGCACTAAATG 523
BSNT_06029___ 317 AAGCAAAATCAGATT----TTCAAACGATGAAAAAATACATTGATCAGCT 362
||.||||| |.| ||||.||.|||||..|||||||.||| .||
BPUM_2484 524 AAACAAAA----AGTGCCCTTCACACAATGAAGCAATACATAGAT--ACT 567
BSNT_06029___ 363 CGAA--ACCATGTACACTGGGCCGAAAATTGAAATCACAGGCTA-CAAAA 409
..|| |..||||.||||||.||||||||||||||.||..|.|| |||||
BPUM_2484 568 TTAAGCAAGATGTTCACTGGTCCGAAAATTGAAATTACCAGTTATCAAAA 617
BSNT_06029___ 410 GCGGCTCCATCCTGAA--ATCACAGG--AACAAGAAAACATCAACCAAAC 455
.|||||.|||.|.|| || || ||.|||||||.||||.|...|.
BPUM_2484 618 -AGGCTCTATCTTCAAAGAT----GGAAAAGAAGAAAAAATCAGCAGTAA 662
BSNT_06029___ 456 CTTCGGCGCGATT------AACCCGCAAATGAAGCAGCCG--------GA 491
|.||.||| |||| || |||| ||.|| ||
BPUM_2484 663 CATCAGCG-GATTGAATAAAA-----AAAT-----AGACGACCCTAAAGA 701
BSNT_06029___ 492 TGATTCACCGATGGAGATGATGCTGAAGAAACTAGCCGAGAATGA-AAAG 540
..|| ||.|||..|||.||||||||.||.|| |||||| ||||
BPUM_2484 702 AAAT---CCAATGACGATCATGCTGAACAAGCT------GAATGATAAAG 742
BSNT_06029___ 541 -----TCTAAAGTGGATTCAGTTGTCAAAACGGGTCATTCTAAAAAGGTA 585
||.||.||||||.|..||||.||.|.|...|..|||||.||..|.
BPUM_2484 743 AGCAATCGAATGTGGATACTCTTGTGAAGAAGAAACCCTCTAATAAAATC 792
BSNT_06029___ 586 AGTAAAAATATCATCGTTATC---AATGGAAAAGTGTATAATACGAGTGA 632
|.|.|||| |..|||..|| |||||||||||.||||||||.|.|||
BPUM_2484 793 AATCAAAA---CGCCGTGTTCGTAAATGGAAAAGTATATAATACAAATGA 839
BSNT_06029___ 633 ACATAGAGAACATATAAAAACTGATTTCTCAAATGC----AGAGGTTAAG 678
|||.|.|||.|||.||||||| |.||.|.|||
BPUM_2484 840 ---------------AAAGATTGACTTCGCAAATGCCAAAACAGTTGAAG 874
BSNT_06029___ 679 CAAGTTGTTTAT----AATG--ATACACT-----TTACAATGTATACATA 717
|||| .||| ||.|.|| ||||.| |||
BPUM_2484 875 --------TTATTCGAGATGGAATGCTCTATCGGTTACGA-------ATA 909
BSNT_06029___ 718 TCTGGTAATGACA---TGAAGCTTGAACCTGTCGTCTC---GCTTTCGGA 761
.|.|.|.|..||| ||||..||||| ..|.||.| |.||||.||
BPUM_2484 910 ACGGATCAAAACAAAGTGAATATTGAA---AGCATCACAAAGATTTCCGA 956
BSNT_06029___ 762 CATTAAAGTGGATGAGAATGGATATGTGAAA-ATTTTAGAGGCAGCTGTA 810
|.|.||| .|.|..|.||| ||.|||.|..||||.||.
BPUM_2484 957 CTTGAAA-------------CAAACCTCAAACATCTTATATACAGCAGTT 993
BSNT_06029___ 811 GAACTTACCGGCGTGTATGAT-CTATTTAAAGCAGCCACGGGCAGAGATC 859
|||.||||.||..|..||||| |.|||..|..|| .|||.||.|||||.|
BPUM_2484 994 GAATTTACAGGAATAAATGATGCCATTCGAGTCA-TCACAGGAAGAGACC 1042
BSNT_06029___ 860 CGGTATCAGGAGAAAAAGTC----ACAGGGAAAGACCGTGTTG------- 898
|.|||.||||.||.|||||| |||.| ||||||.|.|
BPUM_2484 1043 CTGTAACAGGTGACAAAGTCGCTGACATG----GACCGTCTAGTATCAAG 1088
BSNT_06029___ 899 -TTGCCTCCATAAACTCAGTACCATTTGCCAAAATAGCTAAGTTAGAAAA 947
||| |.|||.| ||||....||.|||||.|||||..|||.||
BPUM_2484 1089 CTTG--TACATGA------TACCCGGAGCTAAAATCGCTAAAGTAGGAA- 1129
BSNT_06029___ 948 GTTAATAGATATTAATAAACTTATTAATGATGGGAAAAAGG--CTAAGAA 995
||||..|||| ||||.|.||.|| |.|.||.||||| |||||||
BPUM_2484 1130 ---AATACGTATT--TAAAATAATGAA--AGGAGAGAAAGGATCTAAGAA 1172
BSNT_06029___ 996 GGCTTCGGAAGT-TAAAAACGTTGCTAAGGATACGGGTAATGGTGTACCT 1044
| |.| |.||||| ||||
BPUM_2484 1173 G--------ATTGTCAAAAC--------------------------ACCT 1188
BSNT_06029___ 1045 TCTTATGGAAAGAAGTCAGTACCTAAAGGACCTTACAGAGAAGTACATGG 1094
||.|..||.||..|.||.|||||.|||||.||.||..|.||||||.||||
BPUM_2484 1189 TCCTTCGGCAAACACTCCGTACCAAAAGGTCCGTATCGTGAAGTAAATGG 1238
BSNT_06029___ 1095 ATTCCCAGTTAAAGTAAAGCCAGGTGCTCAAGAGAAACATATTCCTAATA 1144
.|||||.||.||||||||.|||||.||||||||.|||||||||.||.||.
BPUM_2484 1239 TTTCCCTGTAAAAGTAAAACCAGGCGCTCAAGAAAAACATATTTCTGATG 1288
BSNT_06029___ 1145 CGCCAAATTACAAACAAGAAATAGCAAATGGTAAAAACAAGAGTATTTTC 1194
|.||.||.||.||.||||||.|.||.||||||||||.|||||||||.||.
BPUM_2484 1289 CACCTAACTATAAGCAAGAAGTTGCGAATGGTAAAACCAAGAGTATCTTT 1338
BSNT_06029___ 1195 TATGGTGATAATAAAACAGCACAGGAATTGCTTGATAAGTTTGCAGGAAA 1244
|||||.||.|||||||..|||||.|||||.||.|||||||||||||||||
BPUM_2484 1339 TATGGAGACAATAAAAAGGCACAAGAATTACTAGATAAGTTTGCAGGAAA 1388
BSNT_06029___ 1245 AGG--------TCAACTACTACCAAACGGTAAAAAAGAAAGAGTAGACTT 1286
||| || ||.||| ||.|.|||||||.||.|.||
BPUM_2484 1389 AGGGGATATGTTC-------ACTAAA----AATAGAGAAAGAATAAATTT 1427
BSNT_06029___ 1287 TGGTAAACCAATTGGAAAATACTATGATCGTGATACTGGTGAATACA--- 1333
||||.||..|||.|||||||||||||||| || .|||.||
BPUM_2484 1428 TGGTCAAGTAATAGGAAAATACTATGATC-----AC----AAATCCAAAA 1468
BSNT_06029___ 1334 ------TTGAAACTACTAGAGGAATGATTCATTACGGAAAAGACGGAGCG 1377
||||||||||||..|||.||||.||||||||||||||||||||.
BPUM_2484 1469 CGTATGTTGAAACTACTAACGGATTGATACATTACGGAAAAGACGGAGCT 1518
BSNT_06029___ 1378 CATATAGTGCCTTCAGA-ACCATTAAAGAAGTAA 1410
||.|||||.||..| || |||||.|
BPUM_2484 1519 CACATAGTACCAGC-GAGACCATAA--------- 1542
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Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.