Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05895 and BPUM_2476

See Amino acid alignment / Visit BSNT_05895 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:27
# Commandline: needle
#    -asequence dna-align/BSNT_05895___dltD.1.24716.seq
#    -bsequence dna-align/BPUM_2476___dltD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05895___dltD-BPUM_2476___dltD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05895___dltD-BPUM_2476___dltD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05895___dltD
# 2: BPUM_2476___dltD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1305
# Identity:     790/1305 (60.5%)
# Similarity:   790/1305 (60.5%)
# Gaps:         264/1305 (20.2%)
# Score: 2306.5
# 
#
#=======================================

BSNT_05895___      1 ATGAAAAAGCGTTTTTTCGGTCCAATTATTTTGGCGTTTATTCTATTCGC     50
                     |||||||||||||||||.||.||..|||||||.|||..|.||||||||..
BPUM_2476___d      1 ATGAAAAAGCGTTTTTTTGGGCCGCTTATTTTAGCGGCTGTTCTATTCAT     50

BSNT_05895___     51 AGGCGCCATCGCAATTCCATCTT----------CATGGCTGACAGGCTTC     90
                     .||.|          |.|.||||          |||||||..||     |
BPUM_2476___d     51 TGGTG----------TTCTTCTTGTACCAAATGCATGGCTCTCA-----C     85

BSNT_05895___     91 ATC---ACCGATAAG-CGTGTGA-AAGAGTCAGCAACAGCCTTGAATCCG    135
                     |||   .||.|.||| |...|.| ||.|||||||.||||..||..|||||
BPUM_2476___d     86 ATCTGATCCCAAAAGACAAATTACAAAAGTCAGCCACAGAATTAGATCCG    135

BSNT_05895___    136 AGTATGTTTCAAGGGCTATATTTACAAGATCAGATGCTCAAAGATCCGAC    185
                     .|.|||||.|||||||||||||||||||||.|.|||||.||||||||.||
BPUM_2476___d    136 GGGATGTTCCAAGGGCTATATTTACAAGATGAAATGCTAAAAGATCCAAC    185

BSNT_05895___    186 ATATCTTCCGATTTACGGGTCTTCTGAGCTTTCTCGGCTGGACGAGTTC-    234
                     .|||.|.|||||.||.||.||||||||.||.||.||..|.||     || 
BPUM_2476___d    186 TTATTTGCCGATCTATGGATCTTCTGAACTATCACGTTTTGA-----TCC    230

BSNT_05895___    235 ----CACCCATCTAATTATTTTCAGGTAAA----CAATGAGGGATTCACG    276
                         |||||.||.||||..|||||.|..||    |||    ||.||.||.
BPUM_2476___d    231 ATATCACCCTTCGAATTTCTTTCATGAGAATCCTCAA----GGGTTTACA    276

BSNT_05895___    277 CCATACCTTGTCGGCAAAGGCGGATCCCAGTCATTGATTCATTCTTTAAA    326
                     ||.||.|||.|.||.|||||.|||||.||.|||||.||||||.|..|.||
BPUM_2476___d    277 CCTTATCTTATTGGAAAAGGTGGATCTCAATCATTAATTCATGCGATGAA    326

BSNT_05895___    327 CTTCGCTGCCCACATGGATCAGCTGAAGGGCAAAAAAATCGTATTCATCG    376
                     |||.|||||.||.||||||.|..|.||.||.||.||..|.|||||.||||
BPUM_2476___d    327 CTTTGCTGCTCATATGGATGAATTAAAAGGGAAGAAGCTTGTATTTATCG    376

BSNT_05895___    377 TGTCTCCGCAATGGTTTATTAAGCGCGGGTCTGATGAACAGCATTTCGCG    426
                     ||||.|||||.||||||.|.||..|.||.||.||.||..|.||.||.||.
BPUM_2476___d    377 TGTCCCCGCAGTGGTTTGTAAAAGGGGGATCAGACGAGAATCACTTTGCA    426

BSNT_05895___    427 CCGAACTATTCTGCGCTGCAAGGGCTTGATTTGGCATTTAACGATCAGAT    476
                     |||||||||||.|||||.||||..||..||.|.||.|.|||..|..|.||
BPUM_2476___d    427 CCGAACTATTCAGCGCTTCAAGCACTGAATCTCGCTTATAATAAAGAAAT    476

BSNT_05895___    477 CGACCC-----TGAAATTAAA---------AAGAAAATGATGAAACGCAT    512
                     .||.||     |||||  |||         ||||.|||.||||       
BPUM_2476___d    477 TGATCCAACTGTGAAA--AAAGAACTGATTAAGAGAATCATGA-------    517

BSNT_05895___    513 GCTTCGCTTTAAGGCTGTGCAAAACGATGCCAT--TC-TTTCTGAGCTGT    559
                         || |||||.||.||..|.|||||   |||  || |..|.|||||.|
BPUM_2476___d    518 ----CG-TTTAAAGCAGTAAAGAACGA---CATGGTCATCACAGAGCTTT    559

BSNT_05895___    560 ACAAAGCA-------ATGGTAAACGGCCAGACGTGGAAAGTGAACGCGCT    602
                     ..||||||       .|||.||     ||             ||..||||
BPUM_2476___d    560 TTAAAGCAGAGCTTTCTGGGAA-----CA-------------AATTCGCT    591

BSNT_05895___    603 GAAGCCGGCG------------GCGAAAGTGTATTACAGCATGCTGGAAA    640
                     .|.|.| |||            ||.|||.|||||||..|||||||..|||
BPUM_2476___d    592 TATGGC-GCGATTTCTCCTATTGCCAAAATGTATTATGGCATGCTTCAAA    640

BSNT_05895___    641 AGAAAGATCTGTATTATTCAACGACAGAAT--CATCCGGGC---------    679
                     |||||||..||||.|||        |.|||  .|||.||||         
BPUM_2476___d    641 AGAAAGACATGTACTAT--------ACAATTGGATCGGGGCATGAACGTA    682

BSNT_05895___    680 ----CAAAGCGCTATATCTC--GCAGTCAGTAAAGGATAAGTCATGGTCT    723
                         .|||.||     ||||  .|||||   |||||| ||..||||||||
BPUM_2476___d    683 ACCTTAAACCG-----TCTCCTTCAGTC---AAAGGA-AAAACATGGTCT    723

BSNT_05895___    724 GA-ATTGAATAAACTAGCGGATCAA---TC----GGGC---AAACGCCAC    762
                     || .|||||.||      |.|.|||   ||    |.||   |||.||   
BPUM_2476___d    724 GAGCTTGAAAAA------GAAGCAAGTGTCTTAGGTGCGAAAAAAGC---    764

BSNT_05895___    763 TCCGGTTCTAACGATTTTCACATCGACAACCCTGTCTATA------AAAA    806
                              |..||           |.|||||..|.||||      ||||
BPUM_2476___d    765 ---------AGGGA-----------ATAACCCATTTTATATTAATCAAAA    794

BSNT_05895___    807 GCTG---AAGCCGAAAGTGCCTAAGCTGAAA------GGGAAAAACA--A    845
                     .|||   .|||       ||  |||||||||      ..||||||.|  |
BPUM_2476___d    795 ACTGTTTGAGC-------GC--AAGCTGAAACCGATTATGAAAAAGATGA    835

BSNT_05895___    846 AG---------GAAGA----TCGTATGCGGTGTCACCGGAATATGGCGAC    882
                     ||         |||||    ||.|||||||..|||||.|||||....||.
BPUM_2476___d    836 AGGATTCTCGTGAAGACCACTCTTATGCGGAATCACCAGAATACAAAGAT    885

BSNT_05895___    883 TTTGAAATGATGCTCGATATCCTGAAGGATGCGGGCGCAGAGCCTATGTT    932
                     |||.||||.|||||.|||||..|.||..|.||.||.|||.|||||.||||
BPUM_2476___d    886 TTTCAAATCATGCTGGATATTTTAAAACAGGCAGGGGCAAAGCCTTTGTT    935

BSNT_05895___    933 TGTCACCATTCCTGTTAACGGGAAATGGTACGATTACACGGGCTTCCCGA    982
                     |||.||.||||||||.|||||.||||||||.|||||.||.||.||.||.|
BPUM_2476___d    936 TGTGACGATTCCTGTCAACGGAAAATGGTATGATTATACCGGTTTTCCAA    985

BSNT_05895___    983 AAAAAGGACGCACTGACTATTACAAAAAGGTAAATAAA----CAAATCAG   1028
                     ||.|.|||||.||.||.|||||..|    |.||||.||    |||||..|
BPUM_2476___d    986 AAGAGGGACGTACAGAGTATTATGA----GAAAATCAATCGTCAAATACG   1031

BSNT_05895___   1029 AGCGAA-GGGTTTCCAGGTTGCTGATTT--CTCAGGGCATGAATATGACC   1075
                     .|..|| ||||.| .|.||.||.|||||  ||.|  ||||||.||.||.|
BPUM_2476___d   1032 CGATAACGGGTAT-GAAGTCGCAGATTTGACTAA--GCATGAGTACGATC   1078

BSNT_05895___   1076 CGTATTTCATGAAAGACACCATTCACATCGGC-TGGAAAGGCTGGGTGTA   1124
                     |.||.|||.|.|||||.||.||||||.| |.| |..|||||.||||||||
BPUM_2476___d   1079 CTTACTTCTTTAAAGATACGATTCACGT-GTCTTATAAAGGATGGGTGTA   1127

BSNT_05895___   1125 TGTCGATAAAGCAATTGACGAATTTTATAAAACCGGAAAAGTCACTTCAT   1174
                     ..|||||||.|||||.||..|.|||||.|    |.||..|||..      
BPUM_2476___d   1128 CATCGATAAGGCAATCGAAAAGTTTTACA----CAGAGCAGTAG------   1167

BSNT_05895___   1175 CCTGA   1179
                          
BPUM_2476___d   1167 -----   1167


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