Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05895 and BPUM_2476
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:27
# Commandline: needle
# -asequence dna-align/BSNT_05895___dltD.1.24716.seq
# -bsequence dna-align/BPUM_2476___dltD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05895___dltD-BPUM_2476___dltD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05895___dltD-BPUM_2476___dltD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05895___dltD
# 2: BPUM_2476___dltD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1305
# Identity: 790/1305 (60.5%)
# Similarity: 790/1305 (60.5%)
# Gaps: 264/1305 (20.2%)
# Score: 2306.5
#
#
#=======================================
BSNT_05895___ 1 ATGAAAAAGCGTTTTTTCGGTCCAATTATTTTGGCGTTTATTCTATTCGC 50
|||||||||||||||||.||.||..|||||||.|||..|.||||||||..
BPUM_2476___d 1 ATGAAAAAGCGTTTTTTTGGGCCGCTTATTTTAGCGGCTGTTCTATTCAT 50
BSNT_05895___ 51 AGGCGCCATCGCAATTCCATCTT----------CATGGCTGACAGGCTTC 90
.||.| |.|.|||| |||||||..|| |
BPUM_2476___d 51 TGGTG----------TTCTTCTTGTACCAAATGCATGGCTCTCA-----C 85
BSNT_05895___ 91 ATC---ACCGATAAG-CGTGTGA-AAGAGTCAGCAACAGCCTTGAATCCG 135
||| .||.|.||| |...|.| ||.|||||||.||||..||..|||||
BPUM_2476___d 86 ATCTGATCCCAAAAGACAAATTACAAAAGTCAGCCACAGAATTAGATCCG 135
BSNT_05895___ 136 AGTATGTTTCAAGGGCTATATTTACAAGATCAGATGCTCAAAGATCCGAC 185
.|.|||||.|||||||||||||||||||||.|.|||||.||||||||.||
BPUM_2476___d 136 GGGATGTTCCAAGGGCTATATTTACAAGATGAAATGCTAAAAGATCCAAC 185
BSNT_05895___ 186 ATATCTTCCGATTTACGGGTCTTCTGAGCTTTCTCGGCTGGACGAGTTC- 234
.|||.|.|||||.||.||.||||||||.||.||.||..|.|| ||
BPUM_2476___d 186 TTATTTGCCGATCTATGGATCTTCTGAACTATCACGTTTTGA-----TCC 230
BSNT_05895___ 235 ----CACCCATCTAATTATTTTCAGGTAAA----CAATGAGGGATTCACG 276
|||||.||.||||..|||||.|..|| ||| ||.||.||.
BPUM_2476___d 231 ATATCACCCTTCGAATTTCTTTCATGAGAATCCTCAA----GGGTTTACA 276
BSNT_05895___ 277 CCATACCTTGTCGGCAAAGGCGGATCCCAGTCATTGATTCATTCTTTAAA 326
||.||.|||.|.||.|||||.|||||.||.|||||.||||||.|..|.||
BPUM_2476___d 277 CCTTATCTTATTGGAAAAGGTGGATCTCAATCATTAATTCATGCGATGAA 326
BSNT_05895___ 327 CTTCGCTGCCCACATGGATCAGCTGAAGGGCAAAAAAATCGTATTCATCG 376
|||.|||||.||.||||||.|..|.||.||.||.||..|.|||||.||||
BPUM_2476___d 327 CTTTGCTGCTCATATGGATGAATTAAAAGGGAAGAAGCTTGTATTTATCG 376
BSNT_05895___ 377 TGTCTCCGCAATGGTTTATTAAGCGCGGGTCTGATGAACAGCATTTCGCG 426
||||.|||||.||||||.|.||..|.||.||.||.||..|.||.||.||.
BPUM_2476___d 377 TGTCCCCGCAGTGGTTTGTAAAAGGGGGATCAGACGAGAATCACTTTGCA 426
BSNT_05895___ 427 CCGAACTATTCTGCGCTGCAAGGGCTTGATTTGGCATTTAACGATCAGAT 476
|||||||||||.|||||.||||..||..||.|.||.|.|||..|..|.||
BPUM_2476___d 427 CCGAACTATTCAGCGCTTCAAGCACTGAATCTCGCTTATAATAAAGAAAT 476
BSNT_05895___ 477 CGACCC-----TGAAATTAAA---------AAGAAAATGATGAAACGCAT 512
.||.|| ||||| ||| ||||.|||.||||
BPUM_2476___d 477 TGATCCAACTGTGAAA--AAAGAACTGATTAAGAGAATCATGA------- 517
BSNT_05895___ 513 GCTTCGCTTTAAGGCTGTGCAAAACGATGCCAT--TC-TTTCTGAGCTGT 559
|| |||||.||.||..|.||||| ||| || |..|.|||||.|
BPUM_2476___d 518 ----CG-TTTAAAGCAGTAAAGAACGA---CATGGTCATCACAGAGCTTT 559
BSNT_05895___ 560 ACAAAGCA-------ATGGTAAACGGCCAGACGTGGAAAGTGAACGCGCT 602
..|||||| .|||.|| || ||..||||
BPUM_2476___d 560 TTAAAGCAGAGCTTTCTGGGAA-----CA-------------AATTCGCT 591
BSNT_05895___ 603 GAAGCCGGCG------------GCGAAAGTGTATTACAGCATGCTGGAAA 640
.|.|.| ||| ||.|||.|||||||..|||||||..|||
BPUM_2476___d 592 TATGGC-GCGATTTCTCCTATTGCCAAAATGTATTATGGCATGCTTCAAA 640
BSNT_05895___ 641 AGAAAGATCTGTATTATTCAACGACAGAAT--CATCCGGGC--------- 679
|||||||..||||.||| |.||| .|||.||||
BPUM_2476___d 641 AGAAAGACATGTACTAT--------ACAATTGGATCGGGGCATGAACGTA 682
BSNT_05895___ 680 ----CAAAGCGCTATATCTC--GCAGTCAGTAAAGGATAAGTCATGGTCT 723
.|||.|| |||| .||||| |||||| ||..||||||||
BPUM_2476___d 683 ACCTTAAACCG-----TCTCCTTCAGTC---AAAGGA-AAAACATGGTCT 723
BSNT_05895___ 724 GA-ATTGAATAAACTAGCGGATCAA---TC----GGGC---AAACGCCAC 762
|| .|||||.|| |.|.||| || |.|| |||.||
BPUM_2476___d 724 GAGCTTGAAAAA------GAAGCAAGTGTCTTAGGTGCGAAAAAAGC--- 764
BSNT_05895___ 763 TCCGGTTCTAACGATTTTCACATCGACAACCCTGTCTATA------AAAA 806
|..|| |.|||||..|.|||| ||||
BPUM_2476___d 765 ---------AGGGA-----------ATAACCCATTTTATATTAATCAAAA 794
BSNT_05895___ 807 GCTG---AAGCCGAAAGTGCCTAAGCTGAAA------GGGAAAAACA--A 845
.||| .||| || ||||||||| ..||||||.| |
BPUM_2476___d 795 ACTGTTTGAGC-------GC--AAGCTGAAACCGATTATGAAAAAGATGA 835
BSNT_05895___ 846 AG---------GAAGA----TCGTATGCGGTGTCACCGGAATATGGCGAC 882
|| ||||| ||.|||||||..|||||.|||||....||.
BPUM_2476___d 836 AGGATTCTCGTGAAGACCACTCTTATGCGGAATCACCAGAATACAAAGAT 885
BSNT_05895___ 883 TTTGAAATGATGCTCGATATCCTGAAGGATGCGGGCGCAGAGCCTATGTT 932
|||.||||.|||||.|||||..|.||..|.||.||.|||.|||||.||||
BPUM_2476___d 886 TTTCAAATCATGCTGGATATTTTAAAACAGGCAGGGGCAAAGCCTTTGTT 935
BSNT_05895___ 933 TGTCACCATTCCTGTTAACGGGAAATGGTACGATTACACGGGCTTCCCGA 982
|||.||.||||||||.|||||.||||||||.|||||.||.||.||.||.|
BPUM_2476___d 936 TGTGACGATTCCTGTCAACGGAAAATGGTATGATTATACCGGTTTTCCAA 985
BSNT_05895___ 983 AAAAAGGACGCACTGACTATTACAAAAAGGTAAATAAA----CAAATCAG 1028
||.|.|||||.||.||.|||||..| |.||||.|| |||||..|
BPUM_2476___d 986 AAGAGGGACGTACAGAGTATTATGA----GAAAATCAATCGTCAAATACG 1031
BSNT_05895___ 1029 AGCGAA-GGGTTTCCAGGTTGCTGATTT--CTCAGGGCATGAATATGACC 1075
.|..|| ||||.| .|.||.||.||||| ||.| ||||||.||.||.|
BPUM_2476___d 1032 CGATAACGGGTAT-GAAGTCGCAGATTTGACTAA--GCATGAGTACGATC 1078
BSNT_05895___ 1076 CGTATTTCATGAAAGACACCATTCACATCGGC-TGGAAAGGCTGGGTGTA 1124
|.||.|||.|.|||||.||.||||||.| |.| |..|||||.||||||||
BPUM_2476___d 1079 CTTACTTCTTTAAAGATACGATTCACGT-GTCTTATAAAGGATGGGTGTA 1127
BSNT_05895___ 1125 TGTCGATAAAGCAATTGACGAATTTTATAAAACCGGAAAAGTCACTTCAT 1174
..|||||||.|||||.||..|.|||||.| |.||..|||..
BPUM_2476___d 1128 CATCGATAAGGCAATCGAAAAGTTTTACA----CAGAGCAGTAG------ 1167
BSNT_05895___ 1175 CCTGA 1179
BPUM_2476___d 1167 ----- 1167
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