Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04109 and BPUM_2469
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:38
# Commandline: needle
# -asequence dna-align/BSNT_04109___leuA.1.24716.seq
# -bsequence dna-align/BPUM_2469___leuA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04109___leuA-BPUM_2469___leuA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04109___leuA-BPUM_2469___leuA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04109___leuA
# 2: BPUM_2469___leuA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1578
# Identity: 1141/1578 (72.3%)
# Similarity: 1141/1578 (72.3%)
# Gaps: 108/1578 ( 6.8%)
# Score: 4081.5
#
#
#=======================================
BSNT_04109___ 0 -------------------------------------------------- 0
BPUM_2469___l 1 GTGCGGAAAATTAATTTTTTTGACACAACACTTCGAGATGGAGAGCAATC 50
BSNT_04109___ 1 -------------TTGAATACACAGGAGAAACTTGCCATAGCTAAGCAGC 37
||.|||.||||.||.||.||...|||.||.|||||||
BPUM_2469___l 51 ACCCGGAGTGAACTTAAATGCACAAGAAAAGCTAATCATTGCAAAGCAGC 100
BSNT_04109___ 38 TCGAAAGACTCGGGGCAGATATCATTGAAGCGGGATTTCCCGCTTCGTCC 87
|.||..|.||.||||...||||||||||||||||.|||||||||||.|||
BPUM_2469___l 101 TTGAGCGCCTTGGGGTTAATATCATTGAAGCGGGTTTTCCCGCTTCATCC 150
BSNT_04109___ 88 CGAGGTGACTTTTTAGCTGTTCAGGAAATCGCTAGAACCATTAAAAATTG 137
|||||.||.||.||||..||.||.|||||.||.|||||.|||||.||.||
BPUM_2469___l 151 CGAGGGGATTTCTTAGGCGTACAAGAAATAGCAAGAACGATTAAGAACTG 200
BSNT_04109___ 138 TTCAGTGACTGGTCTGGCCCGTTGTGTAAAAGGTGATATTGATGCTGCTT 187
|||.||..|||||||.||.||.|||||.||||||||.|||||||||||.|
BPUM_2469___l 201 TTCTGTTGCTGGTCTTGCACGATGTGTGAAAGGTGACATTGATGCTGCAT 250
BSNT_04109___ 188 GGGAAGCGTTAAAGGATGGTGCTTACCCGAGAATTCATGTTTTTATCGCC 237
|||||||.|||||.|||||.|...|.||.||..|||||||.|||||.|||
BPUM_2469___l 251 GGGAAGCATTAAAAGATGGAGTGGAGCCAAGGCTTCATGTCTTTATTGCC 300
BSNT_04109___ 238 ACATCGGACATTCATTTGAAACACAAGCTGAAAATGACACGTGAGCAAGT 287
||.||.||||||||..||||.||.||.||.||.|..||||||||..||||
BPUM_2469___l 301 ACTTCTGACATTCACCTGAAGCATAAACTAAAGAAAACACGTGAAGAAGT 350
BSNT_04109___ 288 CATTGAA-AGAGCAGTTGAAATGGTGACATACGCAAAAGAACGTTTTCCG 336
|.|.||| || ||.||.|.||||||||.|||.||.|||||||||||||||
BPUM_2469___l 351 CGTAGAACAG-GCTGTCGCAATGGTGAAATATGCGAAAGAACGTTTTCCG 399
BSNT_04109___ 337 GTTGTGCAATGGTCAGCTGAAGATGCCTGCCGCACTGAGC-TGCCGTTTC 385
|||||.|||||||||||.||||||||.|||||.||.||.| || .||||
BPUM_2469___l 400 GTTGTTCAATGGTCAGCAGAAGATGCGTGCCGTACAGATCTTG--ATTTC 447
BSNT_04109___ 386 -TGGCAGAAATCGTCGAGAAAGTGATTGACGCAGGCGCCAGTGTTATCAA 434
||||||||||.||.||.||.||.||||||||.||.||.|||||.||.||
BPUM_2469___l 448 TTGGCAGAAATTGTAGAAAAGGTCATTGACGCTGGGGCGAGTGTCATTAA 497
BSNT_04109___ 435 TCTT-CCAGACACTGTCGGCTACCTGGCTCCAGCGGAATACGGAAATATC 483
||| |||||.||.||.||.|||||.||.|||...||.|||||.||||||
BPUM_2469___l 498 -CTTGCCAGATACAGTTGGATACCTTGCGCCAAAAGAGTACGGTAATATC 546
BSNT_04109___ 484 TTTAAATATATGAAGGAAAACGTTCCGAACATTCACAAAG-CAAAGCTT- 531
||||||||||||||||||.|||||||.||.||..||...| ||| |||
BPUM_2469___l 547 TTTAAATATATGAAGGAACACGTTCCAAATATCGACCGTGTCAA--CTTG 594
BSNT_04109___ 532 TCAGCCCACTGTCATGATGATTTAGGAATGGCAGTTGCAAACTCTCTTGC 581
||.||.||||||||.||||||.||||||||||.||.||||||||.|||||
BPUM_2469___l 595 TCCGCTCACTGTCACGATGATCTAGGAATGGCCGTGGCAAACTCACTTGC 644
BSNT_04109___ 582 TGCGATTGAAAATGGCGCTGATCAAATCGAATGCGCTGTGAACGGGATCG 631
|||.|||||||||||.||.||||||||.|||...|||||.|||||.||.|
BPUM_2469___l 645 TGCTATTGAAAATGGAGCAGATCAAATTGAAACGGCTGTCAACGGAATTG 694
BSNT_04109___ 632 GTGAAAGAGCCGGAAACGCGGCATTAGAGGAAATTGCCGTAGCCCTCCAT 681
|.|||.|.||.|||||.||.||.|||||.||||||||.||.||.||.||.
BPUM_2469___l 695 GCGAACGCGCTGGAAATGCCGCGTTAGAAGAAATTGCAGTCGCTCTTCAC 744
BSNT_04109___ 682 ACCAGAAAAGATTTCTACCAAGTCGAAACAGGCATTAC-ACTGAACGAGA 730
|...|||||||.||.|||||.||||||.|| .|..||| |.||||.||.|
BPUM_2469___l 745 ATTCGAAAAGACTTTTACCAGGTCGAATCA-ACGATACAATTGAATGAAA 793
BSNT_04109___ 731 TTAAGAGAACAAGTGATTTAGTAAGCAA--ACTGACAGGCATGGCTGTCC 778
|||||.|.|||||||||.||||.||||| ||| ||||||||..|||.|
BPUM_2469___l 794 TTAAGCGTACAAGTGATGTAGTGAGCAAATACT--CAGGCATGATTGTAC 841
BSNT_04109___ 779 CACGCAACAAAGCGGTTGTTGGAGATAATGCATTTGCTCATGAATCAGGC 828
|.|||||.|||||.||||||||..|.|||||.|||||.|||||||||||.
BPUM_2469___l 842 CGCGCAATAAAGCTGTTGTTGGTAACAATGCTTTTGCACATGAATCAGGT 891
BSNT_04109___ 829 ATCCATCAGGACGGCTTTTTAAAGGAAAAATCGACTTATGAAATTATTTC 878
||.||.||.||.||.||..|.||.||||||.|.||.||||||||.|||||
BPUM_2469___l 892 ATTCACCAAGATGGTTTCCTCAAAGAAAAAACAACCTATGAAATCATTTC 941
BSNT_04109___ 879 ACCGGAGCTTGTCGGCGTAACCGCAGATGCGCTTGTCCTAGGTAAACATT 928
.||.|||||.|||||.||.||..||||||.|||||||||.||.|||||.|
BPUM_2469___l 942 TCCAGAGCTCGTCGGTGTGACAACAGATGTGCTTGTCCTCGGGAAACACT 991
BSNT_04109___ 929 CCGGACGCCACGCATTTAAAGACCGGCTGACTGCTTTAGGATTCCAATTT 978
|||||.|.|||||.|||||||||||..|||...|..|||| ||..||..|
BPUM_2469___l 992 CCGGAAGACACGCGTTTAAAGACCGCATGAAAACGCTAGG-TTTTAAACT 1040
BSNT_04109___ 979 GACAG-TGAAGAGATTAATAAATTCTTTACG--ATGTTCAAAGAGTTGAC 1025
.||.| .|||||.||.|||||.| |||.|| |..|||||..|.|||||
BPUM_2469___l 1041 AACGGAAGAAGAAATCAATAAGT--TTTTCGAAACCTTCAAGAACTTGAC 1088
BSNT_04109___ 1026 TGAGAAGAAAAAAGAAATCACTGATGAGGATCTTG-TTTCTCTTATTTTA 1074
.||||||||||||||||||||.|||||.||| ||| |||||.||||.||.
BPUM_2469___l 1089 GGAGAAGAAAAAAGAAATCACAGATGATGAT-TTGATTTCTATTATATTG 1137
BSNT_04109___ 1075 GAAGAAAAAGTAACAGATCGCAAGATTGGGTATGAATTTCTTTCTCTGCA 1124
|||||.||||||.||||.||.||.|||||.||.||||||.....|||.||
BPUM_2469___l 1138 GAAGAGAAAGTAGCAGACCGAAAAATTGGCTACGAATTTGAAAGTCTTCA 1187
BSNT_04109___ 1125 AGTACATTACGGAACAAGTCAGGTCCCTACGGCTAC--TCTTTCGTTGAA 1172
|||||||||.||||||...||..|.||.||.||||| |||.|| ||||
BPUM_2469___l 1188 AGTACATTATGGAACAGAACAAATGCCGACAGCTACGGTCTCTC--TGAA 1235
BSNT_04109___ 1173 AAATCAAGAAAATGCAGAGCTTATTCAGGAAGCTGCAACTGGAGCTGGAA 1222
|||||||||||....|||..|.|||||.|||||.||.||.||.||.||.|
BPUM_2469___l 1236 AAATCAAGAAACACAAGAAGTCATTCAAGAAGCAGCCACAGGTGCAGGCA 1285
BSNT_04109___ 1223 GTGTGGAAGCAATCTACAATACGCTTGAGCGCTGCATCGA-TAAGGACGT 1271
||||.|||||..|.|||||.|||||.||||||||.||.|| .||.||..|
BPUM_2469___l 1286 GTGTAGAAGCTGTGTACAACACGCTGGAGCGCTGTATGGAGGAAAGAATT 1335
BSNT_04109___ 1272 GGAGCTTT---TAGACTACCGCATTCAGTCTAACAGAAAAGGCGAAGATG 1318
|.|| ||||||||||.|||||.||.||..||||||||..|||||
BPUM_2469___l 1336 ----CATTTGCTAGACTACCGTATTCAATCAAATGGAAAAGGCAGAGATG 1381
BSNT_04109___ 1319 CATTTGCCCAGGTGTATGTAAGAGTTTTGGT-GAACGGAAAAGAATCAGC 1367
||.|.|||.|.||.|||||.|..||||...| ||| |||||||||.||||
BPUM_2469___l 1382 CACTAGCCGAAGTATATGTCACTGTTTCAATAGAA-GGAAAAGAAACAGC 1430
BSNT_04109___ 1368 AGGTCGGGGCATAGCGCAAGACGTATTAGAAGCATCAGCGAAAGCCTATT 1417
|||.||.||..||||||||||.||..|.||||||||.|||||||||||..
BPUM_2469___l 1431 AGGACGCGGTGTAGCGCAAGATGTGCTGGAAGCATCGGCGAAAGCCTACG 1480
BSNT_04109___ 1418 TGAACGCAGTCAACCGTCAATTGGTTTTCCAGTCGAATATGAGCG-GATT 1466
|.||.|||||.|||.|.||.||..|.||..|.||.|||.|.|..| .|||
BPUM_2469___l 1481 TCAATGCAGTAAACAGGCATTTAATCTTTAAATCAAATCTCATTGAAATT 1530
BSNT_04109___ 1467 GAAAAACCACACAGCTGTCGGATCATAA 1494
||.||||..||| ||..|| |||||.
BPUM_2469___l 1531 GAGAAACATCAC-GCGATC---TCATAG 1554
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