Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04106 and BPUM_2466
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:38
# Commandline: needle
# -asequence dna-align/BSNT_04106___leuD.1.24716.seq
# -bsequence dna-align/BPUM_2466___leuD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04106___leuD-BPUM_2466___leuD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04106___leuD-BPUM_2466___leuD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04106___leuD
# 2: BPUM_2466___leuD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 615
# Identity: 454/615 (73.8%)
# Similarity: 454/615 (73.8%)
# Gaps: 30/615 ( 4.9%)
# Score: 1569.5
#
#
#=======================================
BSNT_04106___ 1 ATGGAACCTTTGAAAT--CACATACGGGGAAAGCAGCCGTATTAAATCGG 48
|||||.||||| |.| ||||.|..||.|||||.||.||..|.||.||.
BPUM_2466___l 1 ATGGAGCCTTT--AGTTACACACAAAGGAAAAGCCGCTGTGCTTAACCGT 48
BSNT_04106___ 49 ATCAATGTGGATACAGACCAGATTATTCCTAAGCAATTTTTGAAGAGGAT 98
|||||.||.||||||||.||.||||||||.||||||||||||||.||.||
BPUM_2466___l 49 ATCAACGTAGATACAGATCAAATTATTCCGAAGCAATTTTTGAAAAGAAT 98
BSNT_04106___ 99 TGAAAGAACAGGCTACGGGCGTTTTGCATTCTTTGACTGGAGATATGATG 148
||||.||||||||||.||.||.|||||.||.|||||||||.|.|||...|
BPUM_2466___l 99 TGAACGAACAGGCTATGGTCGGTTTGCCTTTTTTGACTGGCGGTATTTAG 148
BSNT_04106___ 149 CGAATGGTGAACCGAACCCTGAATTTGAATTAAACCAGCCTGTTTATCAA 198
|..||||....||.||.|||||.||.|||.|.||.|||||..|||||.||
BPUM_2466___l 149 CCGATGGCAGCCCAAATCCTGATTTCGAACTGAATCAGCCGATTTATGAA 198
BSNT_04106___ 199 GGAGCTTCCATTTTAATAGCAGGAGAAAACTTCGGCTGCGGGTCATCGCG 248
||..|.||||||||.||.||||||||||||||.||||||||.|||||..|
BPUM_2466___l 199 GGTTCATCCATTTTGATCGCAGGAGAAAACTTTGGCTGCGGATCATCAAG 248
BSNT_04106___ 249 TGAACACGCTCCGTGGGCACTTGATGATTATGGGTTTAAAATTATTATTG 298
.|||||.||.||.||||||||||||||||||||.||.||||||.|.||.|
BPUM_2466___l 249 GGAACATGCCCCTTGGGCACTTGATGATTATGGATTCAAAATTGTCATCG 298
BSNT_04106___ 299 CACCGTCATTTGCTGATATTTTCCATCAGAACTGCTTTAAAAACGGTATG 348
||||.|||||.||.||||||||.||.||.||||||||||||||.||.|||
BPUM_2466___l 299 CACCATCATTCGCAGATATTTTTCACCAAAACTGCTTTAAAAATGGGATG 348
BSNT_04106___ 349 CTTCCGATCCG-CATGCCA-TATGACAATTGG-AAACAGCTTGTCGGC-- 393
|||||.||.|| |.|| | |||||....||| ||||| ||..|.||
BPUM_2466___l 349 CTTCCAATTCGTCTTG--ATTATGATGTGTGGAAAACA--TTCGCTGCGT 394
BSNT_04106___ 394 CAGTATGAAAACCA---GTCATTGCAAATGACAGTTGACCTTGAAAAGCA 440
|| |||||.|||.| || || .|.|||||||||||.||||||||.||
BPUM_2466___l 395 CA-TATGAGAACAAAGGGT-AT--GAGATGACAGTTGATCTTGAAAAACA 440
BSNT_04106___ 441 GCTGATTCATGATAGTGAAGGCAATCAAATTTCATTTGAAGTTGATCCGC 490
||..||..|.|||...|||||.|||...|.|.|.|||||.||.|||||.|
BPUM_2466___l 441 GCAAATAGAAGATCACGAAGGGAATATCACTCCTTTTGATGTGGATCCTC 490
BSNT_04106___ 491 ATTGGAAAGAGATGCTGATCAACGGATATGATGAAATTTCATTAACGCTG 540
|.||||.|||.|||||..|.||.||.||||||||.||.||||||||..|.
BPUM_2466___l 491 ACTGGAGAGAAATGCTCCTGAATGGCTATGATGAGATCTCATTAACTTTA 540
BSNT_04106___ 541 CTGCTGGAAGATGA-AATCAAGCAATTTGAATCACAA----AGAAGCTCT 585
||.||.|||||||| |.|||||| ||||||| .|.|| ||.|||
BPUM_2466___l 541 CTACTAGAAGATGACATTCAAGC-ATTTGAA-GATAAGCGCAGCAGC--- 585
BSNT_04106___ 586 TGGCTTCAAGCCTGA 600
|||||.|..||.|.|
BPUM_2466___l 586 TGGCTGCGTGCGTAA 600
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