Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04106 and BPUM_2466

See Amino acid alignment / Visit BSNT_04106 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:38
# Commandline: needle
#    -asequence dna-align/BSNT_04106___leuD.1.24716.seq
#    -bsequence dna-align/BPUM_2466___leuD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04106___leuD-BPUM_2466___leuD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04106___leuD-BPUM_2466___leuD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04106___leuD
# 2: BPUM_2466___leuD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 615
# Identity:     454/615 (73.8%)
# Similarity:   454/615 (73.8%)
# Gaps:          30/615 ( 4.9%)
# Score: 1569.5
# 
#
#=======================================

BSNT_04106___      1 ATGGAACCTTTGAAAT--CACATACGGGGAAAGCAGCCGTATTAAATCGG     48
                     |||||.|||||  |.|  ||||.|..||.|||||.||.||..|.||.||.
BPUM_2466___l      1 ATGGAGCCTTT--AGTTACACACAAAGGAAAAGCCGCTGTGCTTAACCGT     48

BSNT_04106___     49 ATCAATGTGGATACAGACCAGATTATTCCTAAGCAATTTTTGAAGAGGAT     98
                     |||||.||.||||||||.||.||||||||.||||||||||||||.||.||
BPUM_2466___l     49 ATCAACGTAGATACAGATCAAATTATTCCGAAGCAATTTTTGAAAAGAAT     98

BSNT_04106___     99 TGAAAGAACAGGCTACGGGCGTTTTGCATTCTTTGACTGGAGATATGATG    148
                     ||||.||||||||||.||.||.|||||.||.|||||||||.|.|||...|
BPUM_2466___l     99 TGAACGAACAGGCTATGGTCGGTTTGCCTTTTTTGACTGGCGGTATTTAG    148

BSNT_04106___    149 CGAATGGTGAACCGAACCCTGAATTTGAATTAAACCAGCCTGTTTATCAA    198
                     |..||||....||.||.|||||.||.|||.|.||.|||||..|||||.||
BPUM_2466___l    149 CCGATGGCAGCCCAAATCCTGATTTCGAACTGAATCAGCCGATTTATGAA    198

BSNT_04106___    199 GGAGCTTCCATTTTAATAGCAGGAGAAAACTTCGGCTGCGGGTCATCGCG    248
                     ||..|.||||||||.||.||||||||||||||.||||||||.|||||..|
BPUM_2466___l    199 GGTTCATCCATTTTGATCGCAGGAGAAAACTTTGGCTGCGGATCATCAAG    248

BSNT_04106___    249 TGAACACGCTCCGTGGGCACTTGATGATTATGGGTTTAAAATTATTATTG    298
                     .|||||.||.||.||||||||||||||||||||.||.||||||.|.||.|
BPUM_2466___l    249 GGAACATGCCCCTTGGGCACTTGATGATTATGGATTCAAAATTGTCATCG    298

BSNT_04106___    299 CACCGTCATTTGCTGATATTTTCCATCAGAACTGCTTTAAAAACGGTATG    348
                     ||||.|||||.||.||||||||.||.||.||||||||||||||.||.|||
BPUM_2466___l    299 CACCATCATTCGCAGATATTTTTCACCAAAACTGCTTTAAAAATGGGATG    348

BSNT_04106___    349 CTTCCGATCCG-CATGCCA-TATGACAATTGG-AAACAGCTTGTCGGC--    393
                     |||||.||.|| |.||  | |||||....||| |||||  ||..|.||  
BPUM_2466___l    349 CTTCCAATTCGTCTTG--ATTATGATGTGTGGAAAACA--TTCGCTGCGT    394

BSNT_04106___    394 CAGTATGAAAACCA---GTCATTGCAAATGACAGTTGACCTTGAAAAGCA    440
                     || |||||.|||.|   || ||  .|.|||||||||||.||||||||.||
BPUM_2466___l    395 CA-TATGAGAACAAAGGGT-AT--GAGATGACAGTTGATCTTGAAAAACA    440

BSNT_04106___    441 GCTGATTCATGATAGTGAAGGCAATCAAATTTCATTTGAAGTTGATCCGC    490
                     ||..||..|.|||...|||||.|||...|.|.|.|||||.||.|||||.|
BPUM_2466___l    441 GCAAATAGAAGATCACGAAGGGAATATCACTCCTTTTGATGTGGATCCTC    490

BSNT_04106___    491 ATTGGAAAGAGATGCTGATCAACGGATATGATGAAATTTCATTAACGCTG    540
                     |.||||.|||.|||||..|.||.||.||||||||.||.||||||||..|.
BPUM_2466___l    491 ACTGGAGAGAAATGCTCCTGAATGGCTATGATGAGATCTCATTAACTTTA    540

BSNT_04106___    541 CTGCTGGAAGATGA-AATCAAGCAATTTGAATCACAA----AGAAGCTCT    585
                     ||.||.|||||||| |.|||||| ||||||| .|.||    ||.|||   
BPUM_2466___l    541 CTACTAGAAGATGACATTCAAGC-ATTTGAA-GATAAGCGCAGCAGC---    585

BSNT_04106___    586 TGGCTTCAAGCCTGA    600
                     |||||.|..||.|.|
BPUM_2466___l    586 TGGCTGCGTGCGTAA    600


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