Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04103 and BPUM_2465

See Amino acid alignment / Visit BSNT_04103 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:38
# Commandline: needle
#    -asequence dna-align/BSNT_04103___ysoA.1.24716.seq
#    -bsequence dna-align/BPUM_2465___ysoA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04103___ysoA-BPUM_2465___ysoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04103___ysoA-BPUM_2465___ysoA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04103___ysoA
# 2: BPUM_2465___ysoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1063
# Identity:     719/1063 (67.6%)
# Similarity:   719/1063 (67.6%)
# Gaps:         113/1063 (10.6%)
# Score: 2291.5
# 
#
#=======================================

BSNT_04103___      1 ATGACGCATGACAAGAAGAACGCAAAAATTATTCCTTTTCCTCATCTGAA     50
                     ||||..||||||||||||||.|..||..|.|||...||||||..||||||
BPUM_2465___y      1 ATGAAACATGACAAGAAGAAAGATAATGTCATTTTGTTTCCTGGTCTGAA     50

BSNT_04103___     51 AGACCGCCTTGTGGAAAAGGGGATGTCATCACTAAAGGAAAAAAAGTATC    100
                     |||..|.||..|.|||||.||.|||.||.||.||||.||.|||.||||||
BPUM_2465___y     51 AGAAAGACTGATTGAAAAAGGAATGGCAGCATTAAAAGATAAACAGTATC    100

BSNT_04103___    101 AAGAAGCGCTTGAACTGTTTTCAGAAGCGATGAAA----TATGATGATAC    146
                     ||||.||||||.|..|||||||||||||    |||    |||||||||..
BPUM_2465___y    101 AAGAGGCGCTTCACTTGTTTTCAGAAGC----AAAATCTTATGATGATGA    146

BSNT_04103___    147 T---GAATCCGATCTTCACTTAGGGATGGCCATCTGCTTTTTAGAGCTGG    193
                     |   |||||||||.||||..|.||.|||||.||.||.|||.|||||||||
BPUM_2465___y    147 TGAAGAATCCGATATTCATCTCGGCATGGCGATTTGTTTTCTAGAGCTGG    196

BSNT_04103___    194 GCGAGCTGGAAGAGGCAAAAAGCGTGTGCGAGAAGATGCTCAAAGAAGGT    243
                     |||||||..|.||.|||||..|.|||||.||.||||||||..|.|||||.
BPUM_2465___y    197 GCGAGCTACAGGATGCAAAGCGTGTGTGTGAAAAGATGCTGCATGAAGGA    246

BSNT_04103___    244 TATGGCCATTATTTTACGGTTTTGCAGGTGTACATGACCATCTTAATTCA    293
                     |||||.|||||.||.||.||..|.||.||.||.|||||.|||||||||||
BPUM_2465___y    247 TATGGTCATTACTTCACCGTGCTTCAAGTATATATGACAATCTTAATTCA    296

BSNT_04103___    294 GCTCAAAAAATACGAGGAAGTCAAAAGC--ACCATTGAAGCCGTTTTGGA    341
                     |||.|||.||||.||.|||||  .||||  ||.||||||||.||..|.||
BPUM_2465___y    297 GCTGAAAGAATATGAAGAAGT--GAAGCAGACAATTGAAGCAGTACTTGA    344

BSNT_04103___    342 AGAAAATCAGCTGCCGGCAGAAAGCGCCGAGCAATTTTATAAGCTGCTGG    391
                     .|||||.||.||.||.|||||||||||.|||||.|||||.||||||||.|
BPUM_2465___y    345 GGAAAACCACCTTCCAGCAGAAAGCGCAGAGCATTTTTACAAGCTGCTCG    394

BSNT_04103___    392 ATTTCAGCCGGAAAATGACCGATCCGGATCG-----------------TG    424
                     |.||.||..|.||.||||.|||     ||||                 ||
BPUM_2465___y    395 AATTTAGTAGAAAGATGATCGA-----ATCGCCTGAACAAATTTTAGATG    439

BSNT_04103___    425 AGGACGA-------GGCTTGGGCCGAA--GAATAT-GAGGATACAATTGA    464
                     |.|||||       |||    |.||||  .||||| ||.||||       
BPUM_2465___y    440 AAGACGATGATGACGGC----GGCGAAATCAATATAGATGATA-------    478

BSNT_04103___    465 CACCGAGAAAGTGCTGGCAAGCCCTGAGGAGCAAATGAATCTCATTCATT    514
                                ||||.|.|.|.||.||.|||||..||.|..||||.||||
BPUM_2465___y    479 -----------TGCTCGAACGGCCAGAAGAGCAGGTGCAGTTCATCCATT    517

BSNT_04103___    515 CCTTAAAAGACCGTAACGTAGCAAAGTATACAGG---ATTGCTCAAA-AC    560
                     |..|.|||||.||.|||.|..|...|.|||..||   |||    ||| ||
BPUM_2465___y    518 CGCTGAAAGATCGAAACATCACGCCGCATATGGGTCTATT----AAATAC    563

BSNT_04103___    561 AATCCTCCAAGACCCCTCA-GCCCACCCGATTATCAAAACGATGAT--TG    607
                     .|||||.||| |..|||.| |...||||..|..|||||.|..||||  ||
BPUM_2465___y    564 GATCCTACAA-AAGCCTGATGGAAACCCTTTGGTCAAATCATTGATCCTG    612

BSNT_04103___    608 TCATGCTGTTGACTGAGCATGA-GT-ACAGTAAGCCTGTACACATTAGTA    655
                      || |||..||.|.||.||||| || .||  |||||.||.||..|.|..|
BPUM_2465___y    613 -CA-GCTACTGTCAGATCATGATGTGGCA--AAGCCGGTTCATGTGACGA    658

BSNT_04103___    656 AATTTGGCGAGTCGTTGACAATTGAACCGTCTGAGATTGTTCCGCCTG--    703
                     |.||.||.||.|||||.||..|||..||.||||||..||||..|||.|  
BPUM_2465___y    659 AGTTCGGTGATTCGTTAACGCTTGTTCCTTCTGAGGCTGTTAAGCCAGAG    708

BSNT_04103___    704 ---ATGCCGC-GCCGATTCTGCACCGTGTTCTCAGGGTGCTGGATGAGAC    749
                        |||||.| ||   |||.|||   .|||||..|...|||.|||||.||
BPUM_2465___y    709 CAAATGCCACTGC---TTCAGCA---AGTTCTTCGTAAGCTCGATGACAC    752

BSNT_04103___    750 ACTTGGAAATGAAAATCCAACCTTATATGCAGCAGTAGAGGAATTGTGGA    799
                     |||.||.|||||.||.||||||.|.||...||..||.||.||.||.|||.
BPUM_2465___y    753 ACTCGGCAATGAGAACCCAACCCTTTACCAAGGTGTGGAAGAGTTATGGC    802

BSNT_04103___    800 GAAGAC----ATTTGTACGTTTTATATCCGTTCCAGCCGAAAT-TGCTG-    843
                     |..|.|    ||||||.|    |||||||.||.|..||.|||| |.|.| 
BPUM_2465___y    803 GCCGGCACTTATTTGTCC----TATATCCATTTCTACCTAAATATACAGA    848

BSNT_04103___    844 TCGGCTGACCTTTGGGCGGCTGCCCTTCATAAAGTCGGTTACGAGATGCA    893
                     ||  |..|.||||||||.||.||.||||||||||||||.||.||.|||||
BPUM_2465___y    849 TC--CGAATCTTTGGGCAGCAGCACTTCATAAAGTCGGCTATGAAATGCA    896

BSNT_04103___    894 CGGGATTGAAATTGAAAGCGAAGAACTTCATATGATGTATGAATTTACCG    943
                     .|||||.||.|||||...|||||||.|.|||.|..|||||||||||...|
BPUM_2465___y    897 TGGGATCGAGATTGACCTCGAAGAATTACATCTATTGTATGAATTTGATG    946

BSNT_04103___    944 ACAGAGAACTCGA-TGAAGCTTGCACAATGTTAAAAGATATTGAAGAAAT    992
                     |..||||.|| || .|||||||||||||||.|.|||||||||||||||||
BPUM_2465___y    947 AACGAGAGCT-GAGAGAAGCTTGCACAATGCTGAAAGATATTGAAGAAAT    995

BSNT_04103___    993 TTCTTATTTGTAA   1005
                     |||||||||||||
BPUM_2465___y    996 TTCTTATTTGTAA   1008


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