Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04103 and BPUM_2465
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:38
# Commandline: needle
# -asequence dna-align/BSNT_04103___ysoA.1.24716.seq
# -bsequence dna-align/BPUM_2465___ysoA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04103___ysoA-BPUM_2465___ysoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04103___ysoA-BPUM_2465___ysoA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04103___ysoA
# 2: BPUM_2465___ysoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1063
# Identity: 719/1063 (67.6%)
# Similarity: 719/1063 (67.6%)
# Gaps: 113/1063 (10.6%)
# Score: 2291.5
#
#
#=======================================
BSNT_04103___ 1 ATGACGCATGACAAGAAGAACGCAAAAATTATTCCTTTTCCTCATCTGAA 50
||||..||||||||||||||.|..||..|.|||...||||||..||||||
BPUM_2465___y 1 ATGAAACATGACAAGAAGAAAGATAATGTCATTTTGTTTCCTGGTCTGAA 50
BSNT_04103___ 51 AGACCGCCTTGTGGAAAAGGGGATGTCATCACTAAAGGAAAAAAAGTATC 100
|||..|.||..|.|||||.||.|||.||.||.||||.||.|||.||||||
BPUM_2465___y 51 AGAAAGACTGATTGAAAAAGGAATGGCAGCATTAAAAGATAAACAGTATC 100
BSNT_04103___ 101 AAGAAGCGCTTGAACTGTTTTCAGAAGCGATGAAA----TATGATGATAC 146
||||.||||||.|..||||||||||||| ||| |||||||||..
BPUM_2465___y 101 AAGAGGCGCTTCACTTGTTTTCAGAAGC----AAAATCTTATGATGATGA 146
BSNT_04103___ 147 T---GAATCCGATCTTCACTTAGGGATGGCCATCTGCTTTTTAGAGCTGG 193
| |||||||||.||||..|.||.|||||.||.||.|||.|||||||||
BPUM_2465___y 147 TGAAGAATCCGATATTCATCTCGGCATGGCGATTTGTTTTCTAGAGCTGG 196
BSNT_04103___ 194 GCGAGCTGGAAGAGGCAAAAAGCGTGTGCGAGAAGATGCTCAAAGAAGGT 243
|||||||..|.||.|||||..|.|||||.||.||||||||..|.|||||.
BPUM_2465___y 197 GCGAGCTACAGGATGCAAAGCGTGTGTGTGAAAAGATGCTGCATGAAGGA 246
BSNT_04103___ 244 TATGGCCATTATTTTACGGTTTTGCAGGTGTACATGACCATCTTAATTCA 293
|||||.|||||.||.||.||..|.||.||.||.|||||.|||||||||||
BPUM_2465___y 247 TATGGTCATTACTTCACCGTGCTTCAAGTATATATGACAATCTTAATTCA 296
BSNT_04103___ 294 GCTCAAAAAATACGAGGAAGTCAAAAGC--ACCATTGAAGCCGTTTTGGA 341
|||.|||.||||.||.||||| .|||| ||.||||||||.||..|.||
BPUM_2465___y 297 GCTGAAAGAATATGAAGAAGT--GAAGCAGACAATTGAAGCAGTACTTGA 344
BSNT_04103___ 342 AGAAAATCAGCTGCCGGCAGAAAGCGCCGAGCAATTTTATAAGCTGCTGG 391
.|||||.||.||.||.|||||||||||.|||||.|||||.||||||||.|
BPUM_2465___y 345 GGAAAACCACCTTCCAGCAGAAAGCGCAGAGCATTTTTACAAGCTGCTCG 394
BSNT_04103___ 392 ATTTCAGCCGGAAAATGACCGATCCGGATCG-----------------TG 424
|.||.||..|.||.||||.||| |||| ||
BPUM_2465___y 395 AATTTAGTAGAAAGATGATCGA-----ATCGCCTGAACAAATTTTAGATG 439
BSNT_04103___ 425 AGGACGA-------GGCTTGGGCCGAA--GAATAT-GAGGATACAATTGA 464
|.||||| ||| |.|||| .||||| ||.||||
BPUM_2465___y 440 AAGACGATGATGACGGC----GGCGAAATCAATATAGATGATA------- 478
BSNT_04103___ 465 CACCGAGAAAGTGCTGGCAAGCCCTGAGGAGCAAATGAATCTCATTCATT 514
||||.|.|.|.||.||.|||||..||.|..||||.||||
BPUM_2465___y 479 -----------TGCTCGAACGGCCAGAAGAGCAGGTGCAGTTCATCCATT 517
BSNT_04103___ 515 CCTTAAAAGACCGTAACGTAGCAAAGTATACAGG---ATTGCTCAAA-AC 560
|..|.|||||.||.|||.|..|...|.|||..|| ||| ||| ||
BPUM_2465___y 518 CGCTGAAAGATCGAAACATCACGCCGCATATGGGTCTATT----AAATAC 563
BSNT_04103___ 561 AATCCTCCAAGACCCCTCA-GCCCACCCGATTATCAAAACGATGAT--TG 607
.|||||.||| |..|||.| |...||||..|..|||||.|..|||| ||
BPUM_2465___y 564 GATCCTACAA-AAGCCTGATGGAAACCCTTTGGTCAAATCATTGATCCTG 612
BSNT_04103___ 608 TCATGCTGTTGACTGAGCATGA-GT-ACAGTAAGCCTGTACACATTAGTA 655
|| |||..||.|.||.||||| || .|| |||||.||.||..|.|..|
BPUM_2465___y 613 -CA-GCTACTGTCAGATCATGATGTGGCA--AAGCCGGTTCATGTGACGA 658
BSNT_04103___ 656 AATTTGGCGAGTCGTTGACAATTGAACCGTCTGAGATTGTTCCGCCTG-- 703
|.||.||.||.|||||.||..|||..||.||||||..||||..|||.|
BPUM_2465___y 659 AGTTCGGTGATTCGTTAACGCTTGTTCCTTCTGAGGCTGTTAAGCCAGAG 708
BSNT_04103___ 704 ---ATGCCGC-GCCGATTCTGCACCGTGTTCTCAGGGTGCTGGATGAGAC 749
|||||.| || |||.||| .|||||..|...|||.|||||.||
BPUM_2465___y 709 CAAATGCCACTGC---TTCAGCA---AGTTCTTCGTAAGCTCGATGACAC 752
BSNT_04103___ 750 ACTTGGAAATGAAAATCCAACCTTATATGCAGCAGTAGAGGAATTGTGGA 799
|||.||.|||||.||.||||||.|.||...||..||.||.||.||.|||.
BPUM_2465___y 753 ACTCGGCAATGAGAACCCAACCCTTTACCAAGGTGTGGAAGAGTTATGGC 802
BSNT_04103___ 800 GAAGAC----ATTTGTACGTTTTATATCCGTTCCAGCCGAAAT-TGCTG- 843
|..|.| ||||||.| |||||||.||.|..||.|||| |.|.|
BPUM_2465___y 803 GCCGGCACTTATTTGTCC----TATATCCATTTCTACCTAAATATACAGA 848
BSNT_04103___ 844 TCGGCTGACCTTTGGGCGGCTGCCCTTCATAAAGTCGGTTACGAGATGCA 893
|| |..|.||||||||.||.||.||||||||||||||.||.||.|||||
BPUM_2465___y 849 TC--CGAATCTTTGGGCAGCAGCACTTCATAAAGTCGGCTATGAAATGCA 896
BSNT_04103___ 894 CGGGATTGAAATTGAAAGCGAAGAACTTCATATGATGTATGAATTTACCG 943
.|||||.||.|||||...|||||||.|.|||.|..|||||||||||...|
BPUM_2465___y 897 TGGGATCGAGATTGACCTCGAAGAATTACATCTATTGTATGAATTTGATG 946
BSNT_04103___ 944 ACAGAGAACTCGA-TGAAGCTTGCACAATGTTAAAAGATATTGAAGAAAT 992
|..||||.|| || .|||||||||||||||.|.|||||||||||||||||
BPUM_2465___y 947 AACGAGAGCT-GAGAGAAGCTTGCACAATGCTGAAAGATATTGAAGAAAT 995
BSNT_04103___ 993 TTCTTATTTGTAA 1005
|||||||||||||
BPUM_2465___y 996 TTCTTATTTGTAA 1008
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