Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04099 and BPUM_2462
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:37
# Commandline: needle
# -asequence dna-align/BSNT_04099___lonB.1.24716.seq
# -bsequence dna-align/BPUM_2462___lonB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04099___lonB-BPUM_2462___lonB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04099___lonB-BPUM_2462___lonB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04099___lonB
# 2: BPUM_2462___lonB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1702
# Identity: 1257/1702 (73.9%)
# Similarity: 1257/1702 (73.9%)
# Gaps: 83/1702 ( 4.9%)
# Score: 4482.0
#
#
#=======================================
BSNT_04099___ 1 ATGAGTTGGACAGGGATCGCGTTATTTATTCAGCTGTTTTTTGGGATCAT 50
.||||.||||||||.||||..|||||.||.||.|||||.|||||.|||.|
BPUM_2462___l 1 TTGAGCTGGACAGGAATCGTATTATTCATACAACTGTTCTTTGGTATCGT 50
BSNT_04099___ 51 CATCGGTTTGTATTTTTGGAATTTGCTTAAAAATCAAAGGACACAAAAGG 100
||||||..||||.||||||||.||.||.|.||||||..|.||||||||||
BPUM_2462___l 51 CATCGGGCTGTACTTTTGGAACTTACTGAGAAATCAGCGCACACAAAAGG 100
BSNT_04099___ 101 TCACGATAGATAAAGAATCAAAGAAGGAAATGGAGCAGC-TTCGGAAA-A 148
|.||||||||.|||||.||||||||.|||||||| ||| .||.|||| |
BPUM_2462___l 101 TGACGATAGACAAAGAGTCAAAGAAAGAAATGGA--AGCACTCAGAAAGA 148
BSNT_04099___ 149 TGCGTGCTATC-AGCT-TGTCCGAGCCATTATCTGAGAAGGTCCGCCCCA 196
||||..|.||| |||| .|| ||.||.||.||.||||..|||||.||.|
BPUM_2462___l 149 TGCGGTCAATCAAGCTGAGT--GAACCCTTGTCAGAGAGAGTCCGGCCAA 196
BSNT_04099___ 197 AAAGCTTTAAAGATATCGTCGGACAGGAAGACGGCATTAAAGCATTAAAG 246
|..|.|||.||||||||||.||.|||||||||||||||...|||.||||.
BPUM_2462___l 197 AGGGGTTTCAAGATATCGTGGGGCAGGAAGACGGCATTCGTGCACTAAAA 246
BSNT_04099___ 247 GCGGCTTTATGCGGGCCAAATCCTCAGCATGTGATTGTCTATGGGCCACC 296
|||||..|||||||.||.||.||.||||||||.||.||.||.||.|||||
BPUM_2462___l 247 GCGGCACTATGCGGACCGAACCCACAGCATGTCATCGTTTACGGACCACC 296
BSNT_04099___ 297 GGGAGTTGGGAAAACGGCTGCTGCGCGGCTTGTGTTGGAAGAAGCAAAAA 346
||||||.||.|||||.||.|||||.||.||||||.||||||||||.||..
BPUM_2462___l 297 GGGAGTCGGTAAAACAGCCGCTGCCCGTCTTGTGATGGAAGAAGCGAAGC 346
BSNT_04099___ 347 AACATAAAC----AATCACCGTTTAAAGAGCAGGCTGTCTTTGTGGAACT 392
..| || |.|||||.||||||.|..|.||.||||||||.||.||
BPUM_2462___l 347 GTC----ACGCTGATTCACCATTTAAAAAAGATGCGGTCTTTGTAGAGCT 392
BSNT_04099___ 393 CGATGCGACAACAGCCCGTTTTGATGAAAGAGGAATTGCCGATCCGCTCA 442
||||||.|||||.||..|.||.||||||.||||.|||||.||.|||||.|
BPUM_2462___l 393 CGATGCCACAACCGCAAGATTCGATGAACGAGGCATTGCAGACCCGCTTA 442
BSNT_04099___ 443 TCGGCTCTGTCCATGACCCGATATATCAAGGGGCCGGAGCGATGGGACAG 492
|.||.||.||.||||||||.||.||.||.|||||.|||||.|||||.|||
BPUM_2462___l 443 TTGGTTCCGTGCATGACCCCATTTACCAGGGGGCTGGAGCAATGGGGCAG 492
BSNT_04099___ 493 GCTGGGATTCCGCAGCCGAAGCAGGGAGCTGTCACCCATGCCCATGGCGG 542
||.||.|||||||||||.||.||.|||||.|||||.|||||.||||||||
BPUM_2462___l 493 GCAGGCATTCCGCAGCCAAAACAAGGAGCCGTCACACATGCTCATGGCGG 542
BSNT_04099___ 543 TGTGCTGTTTATTGATGAAATAGGGGAGCTGCATCCTATTCAAATGAATA 592
|||.||||||||.||||||||.||.|||||||||||.|||||||||||.|
BPUM_2462___l 543 TGTTCTGTTTATCGATGAAATTGGCGAGCTGCATCCGATTCAAATGAACA 592
BSNT_04099___ 593 AAATGCTGAAGGTGCTTGAGGACAGAAAAGTCTTTTTAGACAGTGCGTAT 642
|||||||.||.|||||.||.||..|.||||||||||||||||||||.||.
BPUM_2462___l 593 AAATGCTCAAAGTGCTGGAAGATCGGAAAGTCTTTTTAGACAGTGCTTAC 642
BSNT_04099___ 643 TACAGTGAGGAAAATACACAAATTCCGAATCATATTCATGATATTTTTCA 692
||.|||||.||||||||.||.||.||||||||.||||||||||||||.||
BPUM_2462___l 643 TATAGTGAAGAAAATACCCAGATCCCGAATCACATTCATGATATTTTCCA 692
BSNT_04099___ 693 AAATGGGCTGCCGGCTGATTTTCGCTTGATTGGCGCGACCACGAGAATGC 742
|||||||||.||||||||||||||.||.|||||.|||||.||.||||..|
BPUM_2462___l 693 AAATGGGCTTCCGGCTGATTTTCGATTAATTGGTGCGACGACAAGAACAC 742
BSNT_04099___ 743 CAAACGAAATTCCGCCAGCTATCAGGTCCCGCTGTCTGGAGGTTTTTTTC 792
|..||||||||||.|||||.||..||||..|.||||||||..||||.||.
BPUM_2462___l 743 CTGACGAAATTCCACCAGCGATTCGGTCAAGATGTCTGGAAATTTTCTTT 792
BSNT_04099___ 793 CGCGAGCTTGAAAAGGACGAGCTGAAAACTGT---TGCCAAAACAGCAGC 839
...||.|||||..||.|.||.|||||||..|| |||.|| .||.|.
BPUM_2462___l 793 AAAGACCTTGACCAGCATGAACTGAAAATCGTCGCTGCTAA---GGCTGT 839
BSNT_04099___ 840 GGATAAAATTGAAAA--AAATATCTCCGAAGAAGGCCTAGATCTT-TTGA 886
..|.||||||.|||| ||.||..| ||.|||||.|| ||.||| ||.|
BPUM_2462___l 840 CCAAAAAATTCAAAAGGAATTAAGT--GATGAAGGGCT-GAACTTGTTAA 886
BSNT_04099___ 887 CCAGCTA---CACACGGAACGGGCGGGAAGCCGTCAATATGATTCAAATC 933
||..||| .|.| ||.||.||.|||||.|||||.|||.|.||.||.
BPUM_2462___l 887 CCTCCTATGTGAAA---AATGGACGTGAAGCGGTCAACATGGTGCAGATT 933
BSNT_04099___ 934 GCAGCGGGGATGGCTGTAACGGAGAATCGGAAGGACATTACGATTGAGGA 983
||.||.||.|||||.||.|||||.||.||.||.|||||.||||||||.||
BPUM_2462___l 934 GCCGCTGGTATGGCGGTGACGGAAAACCGAAAAGACATCACGATTGAAGA 983
BSNT_04099___ 984 TATTGAATGGGTCATTCACTCCAGTCAGCTTACTCCAAAGCACGAGCAAA 1033
|.|.||||||||||||||.||.||.|||||.||.||||...|.||.||||
BPUM_2462___l 984 TGTAGAATGGGTCATTCATTCAAGCCAGCTGACACCAAGATATGAACAAA 1033
BSNT_04099___ 1034 AA--ATCGGTGTTGAA---CCACAGGTTGGCATTGTAAATGGGCTTGCAG 1078
|| |.|| ||| |||.|.||.||..|.||.|||||.||.||.|
BPUM_2462___l 1034 AAGTACCG-----GAAAAGCCAAAAGTGGGGGTCGTCAATGGACTGGCTG 1078
BSNT_04099___ 1079 TCTATGGGCCTAACAGCGGATCGCTTCTGGAAATCGAAGTGA----GTGT 1124
|.|||||.||.||||||||..|.||.||.||.||.||||||| .|||
BPUM_2462___l 1079 TTTATGGACCAAACAGCGGTGCCCTGCTTGAGATTGAAGTGAATATCTGT 1128
BSNT_04099___ 1125 AACCGCGGCTCAAGATAAAGGATCA--ATTAACATCACAGGAATAGCTGA 1172
|| |||.|..||.||||| || ||||||||.|||||.||.||.||
BPUM_2462___l 1129 AA----GGCACTTGAGAAAGG--CAGTATTAACATTACAGGCATTGCAGA 1172
BSNT_04099___ 1173 AGAAGAAAGCATCGGCAGCCAATCAAAATCAATCAGACGAAAAAGCATGG 1222
||||||||||||.||||..||.||||||||.||..|.||||||||.||||
BPUM_2462___l 1173 AGAAGAAAGCATTGGCAATCAGTCAAAATCTATTCGGCGAAAAAGTATGG 1222
BSNT_04099___ 1223 CGAAGGGTTCGGTTGAAAATGTATTAACCGTGCTCCGGACAATGGGAATG 1272
||||.||.||.|||||||||||||||||.|||||.||.| |.|.
BPUM_2462___l 1223 CGAAAGGGTCAGTTGAAAATGTATTAACGGTGCTTCGAA-------ATTT 1265
BSNT_04099___ 1273 AAGCCTTC-------TGATTATGATATTCACATCAATTTCCCAGGAGGGA 1315
|.||.||| |||.|||||.||.||.||.|||||.|||||.||..
BPUM_2462___l 1266 AGGCATTCGGACAAATGAATATGACATCCATATTAATTTTCCAGGCGGTG 1315
BSNT_04099___ 1316 TTCCGATTGATGGGCCGTCAGCAGGCATTGCGATGGCGGCGGGGATTTTC 1365
..||.||||||||.|||||.||.||.|||||.||||||.|.|..||.|||
BPUM_2462___l 1316 CCCCAATTGATGGACCGTCTGCTGGGATTGCCATGGCGACCGCAATCTTC 1365
BSNT_04099___ 1366 TCGGCGATACACAAAATTCCTATTGACAAT---ACCGTTGCGATGACGGG 1412
||.||.|||||..|||||||.|||||..|| || .||.||||||||
BPUM_2462___l 1366 TCAGCCATACATCAAATTCCGATTGATCATCTGAC---AGCCATGACGGG 1412
BSNT_04099___ 1413 CGAAATCAGCCTGAATGGTCTTGTGAAACCCATTGGAGGCGTCATTCCGA 1462
.||||||.|..||.|.||||..|||||.||.||.||.||.||.||.||.|
BPUM_2462___l 1413 TGAAATCGGATTGCAGGGTCAGGTGAAGCCAATCGGTGGTGTGATACCAA 1462
BSNT_04099___ 1463 AAATAAAAGCGGCCAAGCAGTCCGGGGCGAAAAAGGTGATTATCCCATAT 1512
|.||.||.||.||.||||||.|.||.||.|.||..||.|||||.||.|||
BPUM_2462___l 1463 AGATTAAGGCAGCGAAGCAGGCTGGTGCCACAACCGTCATTATTCCTTAT 1512
BSNT_04099___ 1513 GAAAATCAGCAGGCCATCTTAAAGCAGATTGACGGGATCGAGATTATTGC 1562
||.|||||||||.|.|||||||||.|||||||.|||.||...|||.|..|
BPUM_2462___l 1513 GACAATCAGCAGTCGATCTTAAAGGAGATTGAAGGGGTCACCATTGTGCC 1562
BSNT_04099___ 1563 AGTGAAG-ACGTTCCAAGAAGTGCTTGATGAAATTTTGGTGAATCCGCCA 1611
.|||||| || ||||||||.|||||.|||.|...|.||||.||.||||||
BPUM_2462___l 1563 TGTGAAGCAC-TTCCAAGAGGTGCTGGATCAGTGTCTGGTCAACCCGCCA 1611
BSNT_04099___ 1612 -ACG-GAACAAAAACCGTTTCATA--TCGAAATCAATAAAGAATCTGTTT 1657
||| |||.|||.|..|..| |.| .||||||.||.|.|.|||||||||
BPUM_2462___l 1612 GACGAGAAGAAAGATGGACT-AGAAGACGAAATGAAAAGAAAATCTGTTT 1660
BSNT_04099___ 1658 AA 1659
||
BPUM_2462___l 1661 AA 1662
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