Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_04090 and BPUM_2456

See Amino acid alignment / Visit BSNT_04090 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:36
# Commandline: needle
#    -asequence dna-align/BSNT_04090___hemC.1.24716.seq
#    -bsequence dna-align/BPUM_2456___hemC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04090___hemC-BPUM_2456___hemC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04090___hemC-BPUM_2456___hemC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04090___hemC
# 2: BPUM_2456___hemC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 984
# Identity:     675/984 (68.6%)
# Similarity:   675/984 (68.6%)
# Gaps:          87/984 ( 8.8%)
# Score: 2223.5
# 
#
#=======================================

BSNT_04090___      1 ATGATGAGAACGATTAAAGTAGGTTCCAGACGGAGCAAACTCGCTATGAC     50
                        .||.|.||.||||||||||||||.|||.|.||.||.||.||.||.||
BPUM_2456___h      1 ---TTGCGTACAATTAAAGTAGGTTCTAGAAGAAGTAAGCTTGCAATTAC     47

BSNT_04090___     51 TCAAACAAAATGGGTTATTCAAAAACTGAAGGAAATCAATCCTTCGTTTG    100
                     .||||||||||||||.||||||||.|||...|||.|.||.|||||.|.|.
BPUM_2456___h     48 ACAAACAAAATGGGTCATTCAAAAGCTGTCTGAACTAAACCCTTCTTATT     97

BSNT_04090___    101 TTTTTGAAATTAAAGAGATCGTGACAAAGGGCGACCGGATTGTCGATGTT    150
                     .|||||||||.||||||||.|||||||||||.||.|..|||.|.|||||.
BPUM_2456___h     98 CTTTTGAAATAAAAGAGATTGTGACAAAGGGTGATCAAATTTTAGATGTA    147

BSNT_04090___    151 ACACTCTCAAAAGTGGGTGGAAAAGGGCTGTTTGTCAAAGAAATTGAACA    200
                     ||..|.|||||.||.||.||||||||.|||||||||||||||||||||||
BPUM_2456___h    148 ACCTTATCAAAGGTTGGCGGAAAAGGACTGTTTGTCAAAGAAATTGAACA    197

BSNT_04090___    201 GGCGCTTTTAAACGAAGAGATTGATATGGCGGTGCACAGCATGAAGGACA    250
                     ||||.|..|.||..|.||.||.||||||||.||.|||||.||||||||.|
BPUM_2456___h    198 GGCGATGCTGAATCACGACATCGATATGGCAGTTCACAGTATGAAGGATA    247

BSNT_04090___    251 TGCCTGCTGTTTTGCCTGAAGGGCTTGTGATCGGCTGTATTCCTGAACGG    300
                     ||||.||||.|.|.||||||||..|.||.||.||||||||||||||.||.
BPUM_2456___h    248 TGCCGGCTGCTCTTCCTGAAGGATTAGTCATTGGCTGTATTCCTGAGCGT    297

BSNT_04090___    301 GAAGACCCGCGT----GATGCCCTTATTTCAAAGAATCGCGTAAAGCTTT    346
                     |||||    .||    ||.||.||||||||.|||.|||      |.| ||
BPUM_2456___h    298 GAAGA----TGTAAGGGACGCTCTTATTTCGAAGGATC------ATC-TT    336

BSNT_04090___    347 CA-------GAAATG---AAGGAAGGTGCTGTCATTGGCACAAGCAGTTT    386
                     ||       ||..||   |||   |||||..|..|.||.||||||||.||
BPUM_2456___h    337 CATCTACATGAGCTGCCAAAG---GGTGCGATTGTGGGAACAAGCAGCTT    383

BSNT_04090___    387 AAGAAGAAGCGCGCAGCTT-TTGATTGAGCGCCCTGACCTTACAATTAAA    435
                     |.|..|.||.||.|||||| ||.| .||..|.||.||.||.|..||.|||
BPUM_2456___h    384 ACGGCGTAGTGCCCAGCTTCTTCA-GGAAAGACCAGATCTGAACATCAAA    432

BSNT_04090___    436 TGGATTAGAGGTAATATAGATACAAGACTTCAAAAGCTGGAAACAGAGGA    485
                     ||||||.||||.||.||.||||||.||.|..||||||||.|||..||.||
BPUM_2456___h    433 TGGATTCGAGGAAACATTGATACACGATTGGAAAAGCTGAAAAATGAAGA    482

BSNT_04090___    486 TTATGACGCGATTATTTTAGCGGCTGCCGGCCTTTCTAGAATGGGGTGGA    535
                     .|||||.||.|||||||||||||||||.||.||.||.||||||||.||||
BPUM_2456___h    483 ATATGATGCCATTATTTTAGCGGCTGCTGGTCTGTCCAGAATGGGCTGGA    532

BSNT_04090___    536 AGCAAGATGTCGTAACCGAATTCCTTGA--GCCTGAGCGCTGTTTGCCTG    583
                     ...||||.||.||..|.|||||  ||.|  .||||||...|||.||||.|
BPUM_2456___h    533 GTAAAGAGGTTGTGTCTGAATT--TTTATCTCCTGAGACTTGTCTGCCCG    580

BSNT_04090___    584 CTGTGGGGCAGGGAGCCCTGGCGATTGAGTGCCGAGAATCGGATGAAGAG    633
                     |.||.||.||.||.||..||.|.|||||||||||.|.|...|||||||||
BPUM_2456___h    581 CAGTTGGCCAAGGCGCTTTGTCAATTGAGTGCCGCGGAGATGATGAAGAG    630

BSNT_04090___    634 CTGTTGGCGTTGTTTTCTCAGTTTACAGATGAATATAC----AAAACGGA    679
                     ||||||..|.|..|..||||.|||||..|||||||.||    ||||||  
BPUM_2456___h    631 CTGTTGCAGCTCCTCGCTCAATTTACGAATGAATACACAAAGAAAACG--    678

BSNT_04090___    680 CTGTCTTAGCGGAACGTG-CTTTTTTAAACGCGATGGAGGGCGGCTGCCA    728
                       ||..|.||.|||||.| |||..|.|||| ..|||||.|||.||||.||
BPUM_2456___h    679 --GTTCTCGCTGAACGAGCCTTCCTCAAAC-AAATGGATGGCAGCTGTCA    725

BSNT_04090___    729 GGTTCCGATCGCAGGCTACTCCGTG-----TTAAATGGACAGGATGAAAT    773
                     |||.|||||.||.||.||     ||     .|.||||..|..||||||||
BPUM_2456___h    726 GGTGCCGATTGCTGGATA-----TGCAACAATGAATGAGCGCGATGAAAT    770

BSNT_04090___    774 TGAAATGACAGGGCTTGTCGCTTCACCTGACGGCAAAATCATTTTTAAAG    823
                     ||||.||||.||.|||||.||.||..||||.||..|.|..|||.||..||
BPUM_2456___h    771 TGAACTGACGGGTCTTGTGGCATCTGCTGATGGACATACGATTATTCGAG    820

BSNT_04090___    824 AAACCGTCACCGGAAACGATCCGGAGGAAGTAGGAA-AGCGCTGTGCCGC    872
                     ||||.||..|.||.|..||.||.||||.|.|.|||| ||| .|||||...
BPUM_2456___h    821 AAACTGTATCAGGCACTGACCCTGAGGCAATTGGAACAGC-ATGTGCGAA    869

BSNT_04090___    873 TCTTATGGCTGACAGAGGAGCAAAAGATTTAATTGATC---GTGTAAAAC    919
                     .|..||||||||.|..||||||||.||||||||.|| |   |||.|||| 
BPUM_2456___h    870 GCAGATGGCTGATAAGGGAGCAAAGGATTTAATCGA-CAAGGTGAAAAA-    917

BSNT_04090___    920 GGGAGCTTG--------ATGAGGATGGAAAATGA    945
                      |||.| ||        ||||             
BPUM_2456___h    918 -GGATC-TGTCCTCCCAATGA-------------    936


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04090 and BPUM_2456

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
