Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_04089 and BPUM_2455

See Amino acid alignment / Visit BSNT_04089 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:36
# Commandline: needle
#    -asequence dna-align/BSNT_04089___hemD.1.24716.seq
#    -bsequence dna-align/BPUM_2455___hemD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04089___hemD-BPUM_2455___hemD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04089___hemD-BPUM_2455___hemD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04089___hemD
# 2: BPUM_2455___hemD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 882
# Identity:     517/882 (58.6%)
# Similarity:   517/882 (58.6%)
# Gaps:         183/882 (20.7%)
# Score: 1331.5
# 
#
#=======================================

BSNT_04089___      1 ------AT-GGAAAATGATTTTCCGTTGAAAGGAAAAACAGTACTTGTCA     43
                           || ||..|||       ||.|..|.|||.|.||.||.|||||||
BPUM_2455___h      1 ATGACCATAGGCCAAT-------CGCTTCACGGACAGACGGTGCTTGTCA     43

BSNT_04089___     44 CCCGGAATAAGGCACAGGCAACATCA----------TTTCAGCAAAAAGT     83
                     |.||.|||          .|||.|||          ||||||||.||..|
BPUM_2455___h     44 CTCGAAAT----------GAACGTCAAGCGGGTGTGTTTCAGCAGAAGAT     83

BSNT_04089___     84 GGAGGCGCTTGGCGGTAAAGCGGTTTTAACCTCTTTGATTACGTTT-CGC    132
                     .||.|.|||...|||..|.||..|||||||||||.|.|||..|||| .||
BPUM_2455___h     84 TGAAGAGCTGAACGGCCATGCTATTTTAACCTCTCTTATTCGGTTTGAGC    133

BSNT_04089___    133 C-GCGCTTTGC-CGAATGATGTTGCGGAACAGG------TAAGAGAGGAC    174
                     | .||||   | |.|||||....|||   ||||      |||.|||    
BPUM_2455___h    134 CTACGCT---CACAAATGAAAAAGCG---CAGGCCTTTTTAAAAGA----    173

BSNT_04089___    175 CTTGCCGCGCCAG------GC---TGGCTTGTTTTTACAAGTGTGAACGG    215
                     |||        ||      ||   |||||||||||.||||||||.||.||
BPUM_2455___h    174 CTT--------AGAAAATAGCCAATGGCTTGTTTTCACAAGTGTAAATGG    215

BSNT_04089___    216 GGCAGACTTCTTTTTTTCTTATCTGA-----AGGAAAATCAGCTTA----    256
                     .|    |.|||||||||||.|.|| |     ||||..|||| .|||    
BPUM_2455___h    216 TG----CGTCTTTTTTTCTGAGCT-ACATAGAGGACCATCA-TTTACATA    259

BSNT_04089___    257 -----TTCTCCCTGCGCATAAAAAAATTGCAGCAGTCGGTGAAAAAACC-    300
                          ||.|||     |||...|||.|.||.||.||.|||||.|||||| 
BPUM_2455___h    260 AAAGTTTATCC-----CATTTGAAAGTGGCTGCGGTAGGTGAGAAAACCT    304

BSNT_04089___    301 --GCCCGCCGTTTACAAACGCATAACG---TATCGGTTGATGTGATGCCA    345
                       |||..|| ||.|     |||..|||   |...|||.|||||..|.|  
BPUM_2455___h    305 CTGCCTACC-TTGA-----GCAGCACGGCTTGAAGGTGGATGTCGTAC--    346

BSNT_04089___    346 CAGGAGTAT--ATTGCTGAACAATTGGCTGA--CGCT-CTTAAGCA---G    387
                     |||||..||  ||.||.|||.|..|.|||||  |||| |||.|.||   |
BPUM_2455___h    347 CAGGACGATTCATAGCGGAAGAGCTCGCTGATGCGCTGCTTGACCATGTG    396

BSNT_04089___    388 CATGCTGAACCGGGGGAGCCCATTACCGTAATGAAAGGGAATTTGTCACG    437
                     || |||     .||.||||...|....|||...|||||..|..||||.||
BPUM_2455___h    397 CA-GCT-----AGGAGAGCGTGTGTTTGTAGCAAAAGGACACCTGTCTCG    440

BSNT_04089___    438 TGATGT----GATAAAACAAGAGCTTGTCCCGCTCGGTTTTGAAGTTAAG    483
                     .|||||    .|.|||||    ||||||.||.||.||..|.|||||.|||
BPUM_2455___h    441 AGATGTCGTGAAGAAAAC----GCTTGTTCCACTTGGCATAGAAGTAAAG    486

BSNT_04089___    484 GAATGGGTTCTCTACGAAACGATTCCA--GATGAAGAAGGCATCGAGGCA    531
                     ||||||.||.|.||.||||||.|  ||  |||||.|||||.||.|..||.
BPUM_2455___h    487 GAATGGATTTTATATGAAACGGT--CAAGGATGAGGAAGGGATTGCCGCT    534

BSNT_04089___    532 CTGAAA--------GACGCTGCGGGTCAATATTCCTTTGACTATGTAACA    573
                     ||.|||        ||||..||        |.||.|||||.|.|.|||||
BPUM_2455___h    535 CTTAAAACGGAAATGACGAAGC--------AATCATTTGATTTTATAACA    576

BSNT_04089___    574 TTTACGAGTTCATCAACCGTACATACGTTTATGCATGTCT-TGGGAGAAG    622
                     ||||||||.|||||.||.||.|||.|.|||||||||| || |||..|.||
BPUM_2455___h    577 TTTACGAGCTCATCGACTGTCCATTCATTTATGCATG-CTATGGAGGCAG    625

BSNT_04089___    623 AATTAAAAAAGTGGAAGGCGAATGGGACGGCTTGTATCAGC---------    663
                     |          ||.|  ||||||....|.||||.|..|| |         
BPUM_2455___h    626 A----------TGCA--GCGAATCTAGCTGCTTCTGACA-CTTGTTTTGT    662

BSNT_04089___    664 ----ATTGGGCCTTTAACAAATGATGCCCTTCTGACGTACGGCATCACAT    709
                         ||.||.|||.|||||||.||.||.||.||....|||||.||..|.|
BPUM_2455___h    663 GACGATCGGTCCTCTAACAAAAGAGGCACTGCTTCAATACGGGATTTCTT    712

BSNT_04089___    710 CGCATACGCCTGATACATTTACAATAGATGGCATGCTTGGGTTAATGTGC    759
                     |..|.||.||.|||||.|.|||.|||||.||.|||||||..||.||||||
BPUM_2455___h    713 CTGAAACCCCAGATACTTATACGATAGACGGAATGCTTGAATTGATGTGC    762

BSNT_04089___    760 AGCATGTCAAGAGAGGAAGAGAGAAT--ATGA    789
                     .|..|.|| .||.|||||| ..||||  ||||
BPUM_2455___h    763 CGTTTATC-TGAAAGGAAG-TTGAATAAATGA    792


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04089 and BPUM_2455

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
